Wall clock time and date at job start Tue Mar 31 2020 22:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47266 * 2 1 4 4 H 1.08998 * 109.48154 * 55.02451 * 3 2 1 5 5 C 1.53105 * 109.40668 * 175.01860 * 3 2 1 6 6 C 1.53176 * 109.15891 * 62.50798 * 5 3 2 7 7 H 1.09000 * 109.54186 * 296.93676 * 6 5 3 8 8 C 1.53004 * 109.54187 * 176.76162 * 6 5 3 9 9 C 1.50701 * 109.46902 * 175.17520 * 8 6 5 10 10 O 1.21287 * 119.99933 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99877 * 179.97438 * 9 8 6 12 12 C 1.46929 * 120.62981 * 180.02562 * 11 9 8 13 13 C 1.53189 * 108.89349 * 126.46616 * 12 11 9 14 14 C 1.53036 * 109.31329 * 54.56300 * 13 12 11 15 15 N 1.46500 * 109.46250 * 178.62511 * 14 13 12 16 16 C 1.46498 * 119.99711 * 60.00280 * 15 14 13 17 17 C 1.36932 * 120.00586 * 240.00134 * 15 14 13 18 18 H 1.08010 * 119.99877 * 22.99351 * 17 15 14 19 19 C 1.38810 * 120.00630 * 202.99549 * 17 15 14 20 20 N 1.31627 * 119.99479 * 11.63500 * 19 17 15 21 21 Si 1.86797 * 120.00384 * 191.63869 * 19 17 15 22 22 H 1.48500 * 109.47195 * 59.99657 * 21 19 17 23 23 H 1.48493 * 109.47070 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47094 * 299.99843 * 21 19 17 25 25 C 1.53038 * 109.53827 * 298.63703 * 14 13 12 26 26 C 1.46958 * 120.65468 * 359.82166 * 11 9 8 27 27 C 1.53174 * 109.10862 * 56.84553 * 6 5 3 28 28 C 1.53085 * 109.16712 * 303.06439 * 27 6 5 29 29 O 1.42908 * 109.41248 * 57.61191 * 28 27 6 30 30 H 1.08999 * 109.47341 * 59.99556 * 1 2 3 31 31 H 1.09003 * 109.47485 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47129 * 300.00190 * 1 2 3 33 33 H 1.09005 * 109.46652 * 239.99939 * 2 1 3 34 34 H 1.08999 * 109.47341 * 120.00444 * 2 1 3 35 35 H 1.09004 * 109.59737 * 302.55360 * 5 3 2 36 36 H 1.09005 * 109.45326 * 182.36878 * 5 3 2 37 37 H 1.08997 * 109.47217 * 55.17520 * 8 6 5 38 38 H 1.08996 * 109.46956 * 295.17462 * 8 6 5 39 39 H 1.09004 * 109.58589 * 6.60714 * 12 11 9 40 40 H 1.08997 * 109.58512 * 246.32468 * 12 11 9 41 41 H 1.08997 * 109.49878 * 174.51722 * 13 12 11 42 42 H 1.09001 * 109.49858 * 294.60761 * 13 12 11 43 43 H 1.09004 * 109.46172 * 58.65367 * 14 13 12 44 44 H 1.09000 * 109.47769 * 93.84607 * 16 15 14 45 45 H 1.09002 * 109.47127 * 213.84671 * 16 15 14 46 46 H 1.09006 * 109.47548 * 333.84790 * 16 15 14 47 47 H 0.96997 * 119.99526 * 180.02562 * 20 19 17 48 48 H 1.09007 * 109.49596 * 181.31430 * 25 14 13 49 49 H 1.09000 * 109.49867 * 301.41200 * 25 14 13 50 50 H 1.09000 * 109.46203 * 113.74916 * 26 11 9 51 51 H 1.09003 * 109.71289 * 353.46142 * 26 11 9 52 52 H 1.09007 * 109.51874 * 62.97469 * 27 6 5 53 53 H 1.08995 * 109.52017 * 183.09163 * 27 6 5 54 54 H 1.08997 * 109.48360 * 177.58681 * 28 27 6 55 55 H 1.08997 * 109.48261 * 297.63126 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6058 1.9815 0.8420 5 6 3.5659 1.4425 0.1254 6 6 4.1704 0.7377 -1.0928 7 1 3.8507 -0.3043 -1.1072 8 6 5.6972 0.8035 -1.0168 9 6 6.2913 0.0091 -2.1513 10 8 5.5651 -0.5546 -2.9424 11 7 7.6296 -0.0749 -2.2867 12 6 8.2237 -0.8451 -3.3879 13 6 9.2040 0.0529 -4.1490 14 6 10.2238 0.6349 -3.1675 15 7 11.1828 1.4682 -3.8970 16 6 10.7148 2.6324 -4.6532 17 6 12.5165 1.1590 -3.8720 18 1 12.8328 0.1495 -3.6542 19 6 13.4621 2.1428 -4.1267 20 7 13.1012 3.4081 -4.1651 21 14 15.2464 1.6712 -4.4150 22 1 15.3367 0.7730 -5.5941 23 1 16.0481 2.8961 -4.6638 24 1 15.7727 0.9695 -3.2168 25 6 9.4998 1.4869 -2.1225 26 6 8.5228 0.6056 -1.3387 27 6 3.6900 1.4386 -2.3672 28 6 2.1594 1.4368 -2.3953 29 8 1.6621 2.0816 -1.2210 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8581 0.9152 1.0336 36 1 3.9266 2.4702 0.1678 37 1 6.0320 0.3867 -0.0670 38 1 6.0202 1.8418 -1.0920 39 1 7.4376 -1.1828 -4.0634 40 1 8.7551 -1.7075 -2.9855 41 1 9.7225 -0.5346 -4.9066 42 1 8.6567 0.8643 -4.6289 43 1 10.7535 -0.1775 -2.6699 44 1 10.7844 3.5232 -4.0289 45 1 11.3338 2.7617 -5.5410 46 1 9.6780 2.4786 -4.9524 47 1 13.7619 4.0955 -4.3434 48 1 10.2290 1.9200 -1.4377 49 1 8.9497 2.2848 -2.6213 50 1 9.0791 -0.1370 -0.7668 51 1 7.9359 1.2249 -0.6603 52 1 4.0534 2.4663 -2.3767 53 1 4.0720 0.9093 -3.2401 54 1 1.8114 1.9721 -3.2788 55 1 1.7976 0.4092 -2.4266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985740736.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:22 Heat of formation + Delta-G solvation = -94.267740 kcal Electronic energy + Delta-G solvation = -31026.203295 eV Core-core repulsion = 27062.297854 eV Total energy + Delta-G solvation = -3963.905442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.53176 -40.56473 -38.95192 -36.70759 -35.57915 -34.31080 -33.94924 -32.25496 -31.52535 -31.07904 -29.63178 -28.03934 -26.42780 -25.13000 -24.43664 -24.04204 -23.71561 -22.76510 -21.08329 -20.02752 -19.66758 -18.75762 -18.17154 -17.35394 -16.97477 -16.92241 -16.83100 -16.46728 -15.78400 -15.74608 -15.48918 -15.22882 -14.99990 -14.90716 -14.50248 -14.44064 -14.25455 -13.87723 -13.85475 -13.59314 -13.53949 -13.14365 -13.09789 -12.91053 -12.79971 -12.68489 -12.62298 -12.47391 -12.35863 -12.22048 -12.12669 -12.05939 -11.86723 -11.82486 -11.67757 -11.58857 -11.48637 -11.23665 -10.95881 -10.63070 -10.57238 -10.24253 -9.60485 -8.75666 -7.80956 -5.29023 1.46786 1.49278 1.55349 1.67688 2.07140 2.51381 2.99191 3.32385 3.50160 3.63487 3.73482 3.80889 3.88148 3.92223 4.07881 4.11970 4.18069 4.21355 4.29789 4.35500 4.39851 4.41280 4.42961 4.52439 4.59379 4.64137 4.66988 4.72961 4.78776 4.82214 4.84900 4.88866 4.91174 4.92100 4.95844 5.01999 5.05642 5.11315 5.12880 5.16875 5.24769 5.27387 5.37934 5.40451 5.42605 5.49467 5.50419 5.61174 5.67722 5.72222 6.34699 6.36680 6.49488 7.16749 7.22857 7.89668 8.34512 9.22145 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.002113 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.797716 B =13246.805639 C =13409.664997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.112 0.888 5 C -0.140 4.140 6 C -0.068 4.068 7 H 0.071 0.929 8 C -0.131 4.131 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.610 5.610 12 C 0.123 3.877 13 C -0.132 4.132 14 C 0.173 3.827 15 N -0.612 5.612 16 C 0.184 3.816 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.968 3.032 22 H -0.282 1.282 23 H -0.297 1.297 24 H -0.273 1.273 25 C -0.136 4.136 26 C 0.117 3.883 27 C -0.152 4.152 28 C 0.061 3.939 29 O -0.392 6.392 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.002 0.998 45 H 0.011 0.989 46 H 0.020 0.980 47 H 0.247 0.753 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.086 0.914 51 H 0.111 0.889 52 H 0.060 0.940 53 H 0.068 0.932 54 H 0.092 0.908 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.893 -6.707 12.130 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.028 3.972 4 H 0.130 0.870 5 C -0.178 4.178 6 C -0.087 4.087 7 H 0.089 0.911 8 C -0.171 4.171 9 C 0.301 3.699 10 O -0.460 6.460 11 N -0.342 5.342 12 C -0.001 4.001 13 C -0.172 4.172 14 C 0.066 3.934 15 N -0.334 5.334 16 C 0.039 3.961 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.208 1.208 23 H -0.223 1.223 24 H -0.199 1.199 25 C -0.176 4.176 26 C -0.005 4.005 27 C -0.190 4.190 28 C -0.015 4.015 29 O -0.311 6.311 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.021 0.979 45 H 0.030 0.970 46 H 0.038 0.962 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.104 0.896 51 H 0.129 0.871 52 H 0.078 0.922 53 H 0.087 0.913 54 H 0.110 0.890 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.263 -6.696 11.677 26.016 hybrid contribution 1.645 0.072 -0.852 1.854 sum -20.618 -6.624 10.825 24.210 Atomic orbital electron populations 1.21689 0.95139 1.01648 1.01964 1.22189 0.97025 0.97118 1.03125 1.22384 0.94074 0.93570 0.87162 0.87022 1.22253 0.95415 1.01860 0.98225 1.20907 0.92823 1.00059 0.94886 0.91071 1.21829 0.96162 1.01432 0.97629 1.21255 0.81345 0.80544 0.86786 1.90620 1.60036 1.48946 1.46407 1.48301 1.05820 1.50861 1.29246 1.21459 0.95934 0.93663 0.89012 1.22263 0.97075 0.98964 0.98946 1.20519 0.89158 0.92611 0.91090 1.44169 1.03041 1.30407 1.55803 1.20387 0.93069 0.88807 0.93819 1.19527 0.83044 0.93674 1.42740 0.91049 1.25785 1.01775 0.95116 1.02339 1.70227 1.33828 0.99475 1.55113 0.85335 0.80304 0.76437 0.78322 1.20789 1.22346 1.19871 1.22290 0.98006 0.98609 0.98684 1.21870 0.91900 0.96032 0.90740 1.22272 0.96703 1.00666 0.99365 1.22528 0.92961 0.97895 0.88120 1.87947 1.74974 1.53830 1.14398 0.93526 0.92423 0.91990 0.92216 0.89634 0.88628 0.90788 0.86051 0.87826 0.90298 0.90248 0.91758 0.93637 0.91915 0.97932 0.96981 0.96176 0.94429 0.91954 0.93574 0.89620 0.87098 0.92170 0.91325 0.89002 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 71.98 0.71 -1.19 16 2 C -0.16 -2.09 4.74 30.59 0.14 -1.94 16 3 C 0.09 1.24 3.29 30.63 0.10 1.34 16 4 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.14 -1.82 4.93 30.69 0.15 -1.66 16 6 C -0.07 -1.18 1.61 -10.68 -0.02 -1.19 16 7 H 0.07 1.40 6.56 -2.39 -0.02 1.38 16 8 C -0.13 -2.19 3.53 29.85 0.11 -2.09 16 9 C 0.51 12.66 7.44 87.66 0.65 13.31 16 10 O -0.58 -18.19 13.40 -3.05 -0.04 -18.23 16 11 N -0.61 -15.16 2.98 -818.89 -2.44 -17.60 16 12 C 0.12 3.36 6.43 86.36 0.56 3.92 16 13 C -0.13 -4.40 5.32 30.67 0.16 -4.24 16 14 C 0.17 6.49 2.55 45.02 0.11 6.61 16 15 N -0.61 -29.82 2.81 -702.62 -1.97 -31.79 16 16 C 0.18 9.20 8.03 127.77 1.03 10.22 16 17 C -0.26 -13.93 9.59 84.03 0.81 -13.13 16 18 H 0.07 3.68 7.82 -2.91 -0.02 3.66 16 19 C -0.06 -3.07 5.12 84.86 0.43 -2.63 16 20 N -0.94 -55.32 10.64 21.65 0.23 -55.09 16 21 Si 0.97 44.65 29.57 68.60 2.03 46.68 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C -0.14 -4.31 5.34 30.66 0.16 -4.14 16 26 C 0.12 2.55 6.33 86.34 0.55 3.10 16 27 C -0.15 -3.21 5.13 30.68 0.16 -3.06 16 28 C 0.06 1.20 6.52 72.01 0.47 1.67 16 29 O -0.39 -7.81 10.13 -148.98 -1.51 -9.32 16 30 H 0.05 0.72 7.82 -2.39 -0.02 0.70 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.96 4.98 -2.38 -0.01 0.95 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.12 1.36 7.95 -2.39 -0.02 1.35 16 38 H 0.10 1.60 7.69 -2.39 -0.02 1.58 16 39 H 0.08 2.31 7.01 -2.38 -0.02 2.29 16 40 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.04 1.64 6.72 -2.39 -0.02 1.63 16 43 H 0.06 2.34 7.86 -2.38 -0.02 2.32 16 44 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 45 H 0.01 0.63 7.22 -2.39 -0.02 0.62 16 46 H 0.02 0.88 6.46 -2.38 -0.02 0.87 16 47 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 48 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 49 H 0.05 1.58 7.72 -2.39 -0.02 1.56 16 50 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.11 1.74 5.95 -2.39 -0.01 1.72 16 52 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 53 H 0.07 1.80 6.05 -2.39 -0.01 1.79 16 54 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 55 H 0.05 1.02 6.23 -2.39 -0.01 1.00 16 Total: -1.00 -67.32 404.02 3.42 -63.90 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.85 Total: 16.56 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.28 Total: 4.89 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -4.19 Total: -104.48 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.55 Total: -27.54 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.32 3.42 -63.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985740736.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.370 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds