Wall clock time and date at job start Wed Apr 1 2020 00:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46618 * 2 1 4 4 H 1.08999 * 109.47287 * 305.60181 * 3 2 1 5 5 O 1.42898 * 109.47268 * 65.61019 * 3 2 1 6 6 C 1.42898 * 113.99773 * 209.07490 * 5 3 2 7 7 C 1.54890 * 110.91824 * 96.61215 * 6 5 3 8 8 C 1.54259 * 104.19799 * 156.32630 * 7 6 5 9 9 C 1.53871 * 106.59965 * 336.39204 * 8 7 6 10 10 C 1.54262 * 106.60021 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.46851 * 185.60455 * 3 2 1 12 12 O 1.21283 * 120.00513 * 249.54424 * 11 3 2 13 13 N 1.34783 * 119.99703 * 69.54444 * 11 3 2 14 14 C 1.47018 * 125.64932 * 4.88205 * 13 11 3 15 15 C 1.54325 * 107.27271 * 181.02266 * 14 13 11 16 16 H 1.08998 * 110.71617 * 140.55508 * 15 14 13 17 17 N 1.46494 * 110.72111 * 263.65361 * 15 14 13 18 18 C 1.36936 * 120.00031 * 273.54487 * 17 15 14 19 19 H 1.07993 * 120.00287 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99637 * 180.02562 * 18 17 15 21 21 N 1.31618 * 119.99860 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00100 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47261 * 90.00304 * 22 20 18 24 24 H 1.48507 * 109.47284 * 209.99863 * 22 20 18 25 25 H 1.48498 * 109.47573 * 329.99921 * 22 20 18 26 26 C 1.55161 * 102.93975 * 22.19927 * 15 14 13 27 27 C 1.52999 * 111.00483 * 82.57072 * 26 15 14 28 28 C 1.53001 * 111.00215 * 206.38331 * 26 15 14 29 29 C 1.47423 * 125.64623 * 184.58251 * 13 11 3 30 30 H 1.09003 * 109.46795 * 176.68978 * 1 2 3 31 31 H 1.09007 * 109.47152 * 296.68337 * 1 2 3 32 32 H 1.08995 * 109.47287 * 56.68556 * 1 2 3 33 33 H 1.08996 * 109.46779 * 239.99816 * 2 1 3 34 34 H 1.09000 * 109.47160 * 119.99973 * 2 1 3 35 35 H 1.09000 * 110.67225 * 333.26294 * 6 5 3 36 36 H 1.09002 * 110.48002 * 37.64832 * 7 6 5 37 37 H 1.09002 * 110.48591 * 275.01035 * 7 6 5 38 38 H 1.08998 * 110.03573 * 217.10504 * 8 7 6 39 39 H 1.09005 * 110.03182 * 95.67833 * 8 7 6 40 40 H 1.09006 * 110.03160 * 119.28875 * 9 8 7 41 41 H 1.09003 * 110.03447 * 240.66032 * 9 8 7 42 42 H 1.08999 * 110.48849 * 142.29124 * 10 9 8 43 43 H 1.09004 * 110.48325 * 264.92918 * 10 9 8 44 44 H 1.09004 * 109.88413 * 300.44319 * 14 13 11 45 45 H 1.09002 * 109.88428 * 61.61018 * 14 13 11 46 46 H 0.97001 * 119.99483 * 93.54788 * 17 15 14 47 47 H 0.97002 * 120.00330 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.47141 * 59.99880 * 27 26 15 49 49 H 1.09000 * 109.46746 * 179.97438 * 27 26 15 50 50 H 1.08997 * 109.47122 * 299.99538 * 27 26 15 51 51 H 1.09000 * 109.47042 * 59.99759 * 28 26 15 52 52 H 1.08995 * 109.47004 * 179.97438 * 28 26 15 53 53 H 1.08999 * 109.47323 * 299.99993 * 28 26 15 54 54 H 1.09004 * 110.36519 * 274.73682 * 29 13 11 55 55 H 1.08998 * 110.36901 * 37.06414 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5969 1.9845 -0.8356 5 8 1.6741 2.0771 1.2270 6 6 1.4872 3.4896 1.1177 7 6 -0.0108 3.8363 0.9310 8 6 -0.1279 5.2906 1.4320 9 6 1.0473 5.5183 2.3988 10 6 1.8371 4.1943 2.4521 11 6 3.5405 1.4449 -0.1388 12 8 4.2356 1.7806 0.7967 13 7 4.1102 1.0738 -1.3025 14 6 3.3911 0.7429 -2.5414 15 6 4.4490 0.3532 -3.5952 16 1 4.1022 -0.4863 -4.1977 17 7 4.7788 1.4987 -4.4468 18 6 4.0240 1.7657 -5.5577 19 1 3.1859 1.1317 -5.8063 20 6 4.3369 2.8508 -6.3649 21 7 3.6112 3.1079 -7.4324 22 14 5.7871 3.9471 -5.9353 23 1 7.0137 3.4240 -6.5888 24 1 5.5224 5.3281 -6.4131 25 1 5.9782 3.9609 -4.4628 26 6 5.6675 -0.0600 -2.7280 27 6 5.5322 -1.5056 -2.2454 28 6 6.9777 0.1395 -3.4926 29 6 5.5579 0.9384 -1.5457 30 1 -0.3633 -1.0260 -0.0593 31 1 -0.3634 0.4615 0.9183 32 1 -0.3633 0.5644 -0.8587 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.0823 3.8942 0.2990 36 1 -0.6334 3.1742 1.5327 37 1 -0.2892 3.7715 -0.1209 38 1 -1.0740 5.4304 1.9548 39 1 -0.0595 5.9816 0.5917 40 1 1.6860 6.3200 2.0279 41 1 0.6715 5.7696 3.3907 42 1 2.9077 4.3908 2.5101 43 1 1.5127 3.5905 3.2997 44 1 2.7164 -0.0950 -2.3660 45 1 2.8271 1.6099 -2.8855 46 1 5.5319 2.0679 -4.2237 47 1 3.8295 3.8663 -7.9963 48 1 5.4738 -2.1719 -3.1060 49 1 6.3996 -1.7693 -1.6404 50 1 4.6271 -1.6055 -1.6464 51 1 7.0829 1.1895 -3.7654 52 1 7.8154 -0.1573 -2.8615 53 1 6.9681 -0.4712 -4.3953 54 1 5.9884 1.9019 -1.8188 55 1 6.0550 0.5364 -0.6629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996366985.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:52 Heat of formation + Delta-G solvation = -99.254063 kcal Electronic energy + Delta-G solvation = -31991.646681 eV Core-core repulsion = 28027.525016 eV Total energy + Delta-G solvation = -3964.121665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.69395 -40.24360 -39.04929 -37.21970 -35.88367 -34.94570 -33.92486 -33.04013 -29.79583 -29.68954 -29.38799 -28.43155 -28.09516 -26.49506 -25.42526 -23.29462 -22.65483 -21.80764 -21.28672 -20.66646 -20.32571 -19.40669 -18.51410 -17.88573 -17.19943 -16.94429 -16.71835 -16.36141 -16.09852 -15.82674 -15.40763 -15.17670 -14.98607 -14.73407 -14.57510 -14.38843 -14.15932 -13.89230 -13.69451 -13.55370 -13.51235 -13.31619 -13.19903 -13.04759 -12.95825 -12.85382 -12.81685 -12.71150 -12.29136 -12.22580 -12.11492 -11.98438 -11.97191 -11.86272 -11.84966 -11.62418 -11.54660 -11.35908 -11.32322 -11.25757 -11.01273 -10.28800 -9.70996 -9.32699 -8.02364 -5.34602 1.34823 1.35331 1.41678 1.45507 1.83812 2.45596 2.57278 3.25096 3.27643 3.47295 3.55196 3.63182 3.66254 3.75857 3.82888 3.87213 3.94483 3.96743 4.15938 4.24199 4.27866 4.41447 4.44984 4.49182 4.54552 4.54965 4.57331 4.61253 4.70926 4.71597 4.77897 4.85760 4.86505 4.91491 4.95959 5.01220 5.04554 5.05521 5.05798 5.11047 5.12096 5.18549 5.22075 5.23406 5.27873 5.37205 5.40435 5.41519 5.49113 5.79975 6.06524 6.22085 6.46403 7.04163 7.07754 7.83352 8.00430 9.18645 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.003839 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.926529 B = 7290.949378 C = 8478.791039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.084 3.916 4 H 0.087 0.913 5 O -0.354 6.354 6 C 0.073 3.927 7 C -0.138 4.138 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.497 3.503 12 O -0.575 6.575 13 N -0.604 5.604 14 C 0.076 3.924 15 C 0.174 3.826 16 H 0.086 0.914 17 N -0.741 5.741 18 C -0.220 4.220 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.978 5.978 22 Si 0.935 3.065 23 H -0.275 1.275 24 H -0.301 1.301 25 H -0.266 1.266 26 C -0.077 4.077 27 C -0.123 4.123 28 C -0.127 4.127 29 C 0.116 3.884 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.363 0.637 47 H 0.256 0.744 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.057 0.943 51 H 0.036 0.964 52 H 0.075 0.925 53 H 0.065 0.935 54 H 0.044 0.956 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.727 -5.814 18.048 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C 0.022 3.978 4 H 0.105 0.895 5 O -0.272 6.272 6 C 0.015 3.985 7 C -0.176 4.176 8 C -0.159 4.159 9 C -0.157 4.157 10 C -0.156 4.156 11 C 0.287 3.713 12 O -0.455 6.455 13 N -0.338 5.338 14 C -0.049 4.049 15 C 0.065 3.935 16 H 0.104 0.896 17 N -0.383 5.383 18 C -0.351 4.351 19 H 0.090 0.910 20 C -0.244 4.244 21 N -0.629 5.629 22 Si 0.764 3.236 23 H -0.201 1.201 24 H -0.228 1.228 25 H -0.191 1.191 26 C -0.079 4.079 27 C -0.181 4.181 28 C -0.185 4.185 29 C -0.007 4.007 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.055 0.945 52 H 0.094 0.906 53 H 0.084 0.916 54 H 0.063 0.937 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.601 -5.715 18.627 20.020 hybrid contribution 1.109 1.555 -0.597 2.001 sum -3.492 -4.160 18.031 18.831 Atomic orbital electron populations 1.21686 0.92849 1.03043 1.02353 1.21626 0.98492 0.90988 1.03772 1.22169 0.88649 0.98072 0.88883 0.89542 1.87954 1.87933 1.20605 1.30701 1.23351 0.96464 0.80416 0.98256 1.22790 0.95123 0.97839 1.01852 1.22060 0.99265 0.95343 0.99183 1.22080 0.96793 0.95928 1.00908 1.22366 0.99876 0.96686 0.96632 1.21658 0.92323 0.76428 0.80935 1.90646 1.65477 1.49357 1.40057 1.48557 1.08133 1.66331 1.10744 1.23182 0.96927 1.00883 0.83907 1.21461 0.92602 0.89829 0.89638 0.89575 1.42835 1.35442 1.32109 1.27952 1.19045 1.08228 1.08499 0.99339 0.91029 1.25251 1.01283 1.00402 0.97479 1.69834 1.43099 1.31810 1.18117 0.85727 0.81070 0.78699 0.78119 1.20141 1.22796 1.19117 1.22050 0.95902 0.96336 0.93570 1.21644 1.02501 0.92225 1.01712 1.21608 0.95455 1.01182 1.00280 1.22348 0.81473 0.98357 0.98497 0.90539 0.92335 0.92338 0.88846 0.91040 0.93680 0.89880 0.91420 0.89707 0.91580 0.91714 0.89717 0.92833 0.90471 0.88687 0.92592 0.80281 0.93499 0.90834 0.91137 0.92342 0.94452 0.90593 0.91559 0.93726 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.78 71.98 0.70 -1.72 16 2 C -0.11 -2.33 5.56 30.60 0.17 -2.16 16 3 C 0.08 2.26 1.74 29.85 0.05 2.32 16 4 H 0.09 2.28 7.63 -2.39 -0.02 2.27 16 5 O -0.35 -10.11 8.96 -130.12 -1.17 -11.28 16 6 C 0.07 1.89 3.17 31.90 0.10 1.99 16 7 C -0.14 -2.78 6.56 31.67 0.21 -2.57 16 8 C -0.12 -2.05 6.80 31.31 0.21 -1.84 16 9 C -0.12 -2.15 6.80 31.32 0.21 -1.93 16 10 C -0.12 -2.78 6.55 31.68 0.21 -2.57 16 11 C 0.50 16.50 7.11 87.66 0.62 17.12 16 12 O -0.58 -23.21 16.82 15.82 0.27 -22.95 16 13 N -0.60 -18.67 3.31 -811.33 -2.69 -21.36 16 14 C 0.08 2.26 5.59 86.73 0.49 2.75 16 15 C 0.17 5.62 2.85 46.18 0.13 5.75 16 16 H 0.09 2.71 8.02 -2.39 -0.02 2.69 16 17 N -0.74 -31.19 4.42 -317.34 -1.40 -32.59 16 18 C -0.22 -11.44 10.46 84.03 0.88 -10.56 16 19 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 20 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 21 N -0.98 -60.01 13.97 21.65 0.30 -59.70 16 22 Si 0.93 44.51 27.73 68.60 1.90 46.41 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.27 -11.90 6.52 99.48 0.65 -11.25 16 26 C -0.08 -2.03 0.84 -50.71 -0.04 -2.07 16 27 C -0.12 -2.47 8.58 71.98 0.62 -1.85 16 28 C -0.13 -3.34 8.22 71.98 0.59 -2.75 16 29 C 0.12 3.49 5.81 86.93 0.50 4.00 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.05 7.93 -2.38 -0.02 1.03 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.76 5.60 -2.39 -0.01 1.75 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.34 7.81 -2.39 -0.02 1.32 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.10 2.24 5.88 -2.39 -0.01 2.22 16 45 H 0.06 1.96 8.04 -2.39 -0.02 1.94 16 46 H 0.36 15.48 3.98 -92.71 -0.37 15.11 16 47 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.06 1.15 7.91 -2.39 -0.02 1.13 16 51 H 0.04 1.13 6.39 -2.39 -0.02 1.12 16 52 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 54 H 0.04 1.51 7.99 -2.39 -0.02 1.49 16 55 H 0.08 2.25 8.00 -2.39 -0.02 2.23 16 Total: -1.00 -68.47 421.55 3.76 -64.71 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.41 Total: 35.30 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.13 Total: 1.45 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.79 Total: -113.65 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.90 Total: -34.23 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.90 Total: 46.41 kcal Total: -68.47 3.76 -64.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996366985.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.541 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds