Wall clock time and date at job start Wed Apr 1 2020 00:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46741 * 2 1 4 4 H 1.09002 * 109.47307 * 55.92193 * 3 2 1 5 5 O 1.42900 * 109.46848 * 295.92473 * 3 2 1 6 6 C 1.42896 * 113.99908 * 151.90680 * 5 3 2 7 7 C 1.54267 * 110.03461 * 270.28610 * 6 5 3 8 8 C 1.54961 * 104.16221 * 217.13823 * 7 6 5 9 9 C 1.54885 * 102.78131 * 37.88521 * 8 7 6 10 10 C 1.53876 * 110.03547 * 153.06854 * 6 5 3 11 11 C 1.50697 * 109.46820 * 175.92757 * 3 2 1 12 12 O 1.21287 * 120.00089 * 107.30472 * 11 3 2 13 13 N 1.34777 * 119.99855 * 287.30070 * 11 3 2 14 14 C 1.47023 * 125.64897 * 4.62074 * 13 11 3 15 15 C 1.54319 * 107.27042 * 181.02190 * 14 13 11 16 16 H 1.09009 * 110.71904 * 140.73632 * 15 14 13 17 17 N 1.46503 * 110.72424 * 263.83385 * 15 14 13 18 18 C 1.36944 * 119.99622 * 273.54767 * 17 15 14 19 19 H 1.07995 * 120.00092 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99848 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99607 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47303 * 359.97438 * 22 20 18 24 24 H 1.48510 * 109.47169 * 120.00065 * 22 20 18 25 25 H 1.48507 * 109.47333 * 239.99702 * 22 20 18 26 26 C 1.55158 * 102.94564 * 22.19823 * 15 14 13 27 27 C 1.52999 * 111.00549 * 82.56791 * 26 15 14 28 28 C 1.52993 * 111.00656 * 206.38493 * 26 15 14 29 29 C 1.47421 * 125.64859 * 184.31999 * 13 11 3 30 30 H 1.09000 * 109.47053 * 305.43370 * 1 2 3 31 31 H 1.08995 * 109.47015 * 65.43548 * 1 2 3 32 32 H 1.08998 * 109.46976 * 185.43046 * 1 2 3 33 33 H 1.08993 * 109.47116 * 239.99712 * 2 1 3 34 34 H 1.08994 * 109.46751 * 119.99752 * 2 1 3 35 35 H 1.09009 * 110.01995 * 31.67798 * 6 5 3 36 36 H 1.09003 * 110.48223 * 335.78385 * 7 6 5 37 37 H 1.09003 * 110.48824 * 98.42353 * 7 6 5 38 38 H 1.09005 * 110.71753 * 279.57067 * 8 7 6 39 39 H 1.09005 * 110.92526 * 156.29732 * 8 7 6 40 40 H 1.09000 * 110.49207 * 203.40798 * 9 8 7 41 41 H 1.09001 * 110.49008 * 80.76178 * 9 8 7 42 42 H 1.09005 * 110.03548 * 238.56787 * 10 6 5 43 43 H 1.09001 * 110.02778 * 359.97438 * 10 6 5 44 44 H 1.08993 * 109.88577 * 300.44309 * 14 13 11 45 45 H 1.09004 * 109.87801 * 61.61157 * 14 13 11 46 46 H 0.96993 * 120.00489 * 93.54549 * 17 15 14 47 47 H 0.96997 * 119.99466 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.46805 * 60.00116 * 27 26 15 49 49 H 1.08999 * 109.47211 * 180.02562 * 27 26 15 50 50 H 1.09004 * 109.47175 * 300.00153 * 27 26 15 51 51 H 1.09004 * 109.47620 * 59.99463 * 28 26 15 52 52 H 1.09003 * 109.47653 * 179.97438 * 28 26 15 53 53 H 1.09008 * 109.47273 * 299.99853 * 28 26 15 54 54 H 1.09011 * 110.36797 * 274.74617 * 29 13 11 55 55 H 1.09000 * 110.36895 * 37.06700 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6182 1.9771 0.8512 5 8 1.6434 2.0879 -1.2117 6 6 1.4808 3.5024 -1.0906 7 6 0.0302 3.8349 -0.6844 8 6 -0.2946 5.1325 -1.4666 9 6 0.4117 4.8996 -2.8252 10 6 1.7236 4.1794 -2.4509 11 6 3.5436 1.4438 0.1009 12 8 4.2161 1.7329 -0.8662 13 7 4.1410 1.1237 1.2658 14 6 3.4555 0.6632 2.4822 15 6 4.5360 0.4450 3.5622 16 1 4.1797 0.7782 4.5371 17 7 4.9408 -0.9621 3.6137 18 6 4.2383 -1.8488 4.3854 19 1 3.3857 -1.5110 4.9556 20 6 4.6215 -3.1822 4.4337 21 7 5.6597 -3.5941 3.7374 22 14 3.6629 -4.3919 5.4857 23 1 2.5481 -3.6831 6.1639 24 1 3.1136 -5.4699 4.6245 25 1 4.5652 -4.9845 6.5055 26 6 5.7066 1.3352 3.0677 27 6 5.5016 2.7927 3.4856 28 6 7.0498 0.8062 3.5743 29 6 5.5907 1.1713 1.5295 30 1 -0.3633 0.5958 0.8373 31 1 -0.3633 0.4272 -0.9346 32 1 -0.3633 -1.0230 0.0973 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1758 3.8957 -0.3485 36 1 -0.6431 3.0312 -0.9826 37 1 -0.0348 4.0094 0.3896 38 1 0.1214 6.0030 -0.9592 39 1 -1.3700 5.2451 -1.6045 40 1 0.6245 5.8510 -3.3127 41 1 -0.1997 4.2680 -3.4697 42 1 2.5358 4.9018 -2.3689 43 1 1.9658 3.4289 -3.2034 44 1 2.7450 1.4193 2.8161 45 1 2.9362 -0.2741 2.2827 46 1 5.7063 -1.2656 3.1012 47 1 5.9277 -4.5257 3.7715 48 1 5.4501 2.8552 4.5726 49 1 6.3361 3.3946 3.1258 50 1 4.5724 3.1667 3.0557 51 1 7.2029 -0.2084 3.2066 52 1 7.8530 1.4484 3.2128 53 1 7.0507 0.8015 4.6644 54 1 6.0655 0.2443 1.2076 55 1 6.0407 2.0249 1.0225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996366986.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:56 Heat of formation + Delta-G solvation = -102.332471 kcal Electronic energy + Delta-G solvation = -31893.683409 eV Core-core repulsion = 27929.428255 eV Total energy + Delta-G solvation = -3964.255155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.64945 -40.22039 -38.99914 -37.10425 -35.74564 -34.91541 -33.89222 -32.59393 -29.65397 -29.48580 -29.31819 -28.39740 -28.01900 -26.47774 -25.62450 -23.43744 -22.58821 -21.68736 -21.32825 -20.52566 -20.10822 -19.09328 -18.42650 -17.87259 -17.22555 -16.85673 -16.44838 -16.38508 -15.81775 -15.68823 -15.49353 -15.31585 -14.97689 -14.65861 -14.59786 -14.26499 -14.21818 -13.83014 -13.62105 -13.45713 -13.31697 -13.19412 -13.07473 -12.88270 -12.83943 -12.78110 -12.72024 -12.67901 -12.14451 -12.07170 -12.02181 -12.01354 -11.97563 -11.87064 -11.75932 -11.54066 -11.48398 -11.42728 -11.32688 -11.22705 -10.93506 -10.26227 -9.64991 -8.99515 -7.90506 -5.18829 1.47401 1.50434 1.51654 1.60519 1.89486 2.58730 2.63084 3.30075 3.41049 3.60136 3.63461 3.69810 3.79074 3.83275 3.86756 3.93041 4.00839 4.04814 4.20902 4.29190 4.36283 4.45762 4.46161 4.51963 4.56211 4.59450 4.64665 4.67175 4.76120 4.79902 4.81131 4.88376 4.91199 4.92809 4.99823 5.03489 5.06958 5.07295 5.08798 5.11378 5.16906 5.21568 5.26097 5.29308 5.32254 5.38153 5.40808 5.45807 5.55317 5.60833 6.14652 6.30462 6.52458 7.08119 7.38259 8.12173 8.34963 9.32970 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013657 B = 0.003241 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.811729 B = 8635.999420 C = 9806.007492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.094 3.906 4 H 0.105 0.895 5 O -0.362 6.362 6 C 0.076 3.924 7 C -0.143 4.143 8 C -0.118 4.118 9 C -0.118 4.118 10 C -0.123 4.123 11 C 0.494 3.506 12 O -0.580 6.580 13 N -0.601 5.601 14 C 0.075 3.925 15 C 0.171 3.829 16 H 0.083 0.917 17 N -0.724 5.724 18 C -0.230 4.230 19 H 0.085 0.915 20 C -0.074 4.074 21 N -0.970 5.970 22 Si 0.965 3.035 23 H -0.260 1.260 24 H -0.301 1.301 25 H -0.300 1.300 26 C -0.076 4.076 27 C -0.122 4.122 28 C -0.120 4.120 29 C 0.120 3.880 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.374 0.626 47 H 0.247 0.753 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.056 0.944 51 H 0.036 0.964 52 H 0.068 0.932 53 H 0.059 0.941 54 H 0.040 0.960 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 19.220 -5.030 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.032 3.968 4 H 0.122 0.878 5 O -0.280 6.280 6 C 0.018 3.982 7 C -0.181 4.181 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.161 4.161 11 C 0.283 3.717 12 O -0.460 6.460 13 N -0.335 5.335 14 C -0.050 4.050 15 C 0.061 3.939 16 H 0.100 0.900 17 N -0.363 5.363 18 C -0.362 4.362 19 H 0.103 0.897 20 C -0.266 4.266 21 N -0.620 5.620 22 Si 0.796 3.204 23 H -0.184 1.184 24 H -0.229 1.229 25 H -0.228 1.228 26 C -0.077 4.077 27 C -0.179 4.179 28 C -0.178 4.178 29 C -0.003 4.003 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.207 0.793 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.087 0.913 53 H 0.078 0.922 54 H 0.058 0.942 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.414 19.228 -5.656 23.065 hybrid contribution 0.630 -1.546 0.225 1.684 sum -10.784 17.683 -5.431 21.412 Atomic orbital electron populations 1.21636 0.92151 1.02669 1.02821 1.21619 0.99106 0.92251 1.02766 1.22010 0.88066 0.96854 0.89844 0.87769 1.88044 1.87118 1.20877 1.31969 1.23057 0.96944 0.80110 0.98068 1.22927 0.95073 0.99126 1.00958 1.22446 1.01277 0.96733 0.95054 1.22334 0.94899 1.00414 0.97903 1.22197 0.99220 0.98925 0.95761 1.21758 0.92368 0.76469 0.81084 1.90643 1.67117 1.51096 1.37118 1.48555 1.08315 1.64527 1.12107 1.23253 0.97429 0.99246 0.85071 1.21482 0.92059 0.84361 0.96042 0.89953 1.42647 1.35203 1.03765 1.54715 1.19665 1.08297 0.89438 1.18776 0.89718 1.25475 0.99591 0.99206 1.02325 1.69830 1.29754 1.15472 1.46991 0.85182 0.78141 0.79222 0.77868 1.18400 1.22926 1.22753 1.22000 0.96227 0.97187 0.92297 1.21632 1.02097 0.92037 1.02148 1.21510 0.95051 0.99980 1.01250 1.22271 0.81471 1.00229 0.96338 0.91088 0.91981 0.91718 0.92773 0.90133 0.93130 0.90432 0.90391 0.90668 0.89797 0.90186 0.91397 0.91199 0.92331 0.89219 0.91865 0.79255 0.94379 0.90826 0.91451 0.92477 0.94502 0.91303 0.92151 0.94212 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.74 71.98 0.70 -2.10 16 2 C -0.12 -3.26 5.56 30.60 0.17 -3.09 16 3 C 0.09 2.59 1.75 29.85 0.05 2.64 16 4 H 0.10 2.33 7.54 -2.39 -0.02 2.31 16 5 O -0.36 -10.34 8.71 -130.26 -1.13 -11.47 16 6 C 0.08 1.73 3.13 31.32 0.10 1.83 16 7 C -0.14 -2.34 6.54 31.69 0.21 -2.13 16 8 C -0.12 -1.53 6.91 31.91 0.22 -1.31 16 9 C -0.12 -1.79 6.83 31.67 0.22 -1.58 16 10 C -0.12 -2.65 6.61 31.32 0.21 -2.45 16 11 C 0.49 17.26 7.03 87.66 0.62 17.87 16 12 O -0.58 -24.70 16.84 15.67 0.26 -24.44 16 13 N -0.60 -19.88 3.31 -811.35 -2.69 -22.57 16 14 C 0.08 2.31 5.49 86.73 0.48 2.79 16 15 C 0.17 5.80 2.86 46.18 0.13 5.93 16 16 H 0.08 2.64 8.03 -2.38 -0.02 2.62 16 17 N -0.72 -32.81 4.61 -317.32 -1.46 -34.28 16 18 C -0.23 -11.57 9.98 84.03 0.84 -10.73 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.97 -57.55 13.06 21.65 0.28 -57.27 16 22 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 C -0.08 -2.22 0.83 -50.71 -0.04 -2.26 16 27 C -0.12 -2.69 8.59 71.98 0.62 -2.07 16 28 C -0.12 -3.69 8.22 71.98 0.59 -3.10 16 29 C 0.12 4.02 5.81 86.93 0.50 4.53 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.27 7.94 -2.39 -0.02 1.25 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.35 5.55 -2.39 -0.01 2.34 16 35 H 0.05 1.22 7.81 -2.38 -0.02 1.20 16 36 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.06 1.50 7.95 -2.39 -0.02 1.48 16 44 H 0.09 2.14 7.93 -2.39 -0.02 2.12 16 45 H 0.06 2.22 5.95 -2.39 -0.01 2.21 16 46 H 0.37 18.99 6.10 -92.71 -0.57 18.42 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.06 1.22 7.91 -2.39 -0.02 1.20 16 51 H 0.04 1.38 6.38 -2.38 -0.02 1.36 16 52 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 53 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 54 H 0.04 1.56 7.99 -2.38 -0.02 1.54 16 55 H 0.07 2.34 8.00 -2.39 -0.02 2.32 16 Total: -1.00 -67.18 423.95 3.64 -63.53 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.28 Total: 39.09 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 6.07 Total: 1.23 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -3.87 Total: -114.11 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.87 Total: -35.91 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.18 3.64 -63.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996366986.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.800 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds