Wall clock time and date at job start Tue Mar 31 2020 23:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 H 1.08996 * 109.47370 * 54.58057 * 3 2 1 5 5 O 1.42895 * 109.46942 * 294.57305 * 3 2 1 6 6 C 1.42904 * 113.99818 * 153.68304 * 5 3 2 7 7 C 1.52992 * 109.47465 * 146.78566 * 6 5 3 8 8 C 1.52999 * 109.47487 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46887 * 299.99779 * 8 7 6 10 10 C 1.52995 * 109.47133 * 60.00098 * 9 8 7 11 11 C 1.53003 * 109.46821 * 266.78291 * 6 5 3 12 12 C 1.50703 * 109.46731 * 174.57633 * 3 2 1 13 13 O 1.21284 * 120.00076 * 109.26745 * 12 3 2 14 14 N 1.34783 * 119.99919 * 289.25417 * 12 3 2 15 15 C 1.46917 * 120.62933 * 4.58172 * 14 12 3 16 16 C 1.52770 * 109.00537 * 233.57675 * 15 14 12 17 17 C 1.53034 * 109.38401 * 305.59117 * 16 15 14 18 18 N 1.46494 * 109.45033 * 181.25352 * 17 16 15 19 19 C 1.36939 * 120.00245 * 84.93662 * 18 17 16 20 20 H 1.08001 * 120.00058 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00373 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99936 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00451 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46973 * 59.99740 * 23 21 19 25 25 H 1.48494 * 109.47269 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46854 * 300.00215 * 23 21 19 27 27 C 1.53042 * 109.53891 * 61.23658 * 17 16 15 28 28 C 1.46925 * 120.62810 * 184.85483 * 14 12 3 29 29 H 1.09010 * 109.47098 * 305.08530 * 1 2 3 30 30 H 1.08998 * 109.47001 * 65.08160 * 1 2 3 31 31 H 1.08998 * 109.47462 * 185.08664 * 1 2 3 32 32 H 1.08994 * 109.47015 * 239.99881 * 2 1 3 33 33 H 1.09000 * 109.46872 * 119.99694 * 2 1 3 34 34 H 1.09002 * 109.47035 * 26.77980 * 6 5 3 35 35 H 1.09002 * 109.47473 * 59.99682 * 7 6 5 36 36 H 1.09003 * 109.47040 * 299.99718 * 7 6 5 37 37 H 1.08998 * 109.47100 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46947 * 59.99454 * 8 7 6 39 39 H 1.09002 * 109.46799 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.47062 * 299.99604 * 9 8 7 41 41 H 1.09002 * 109.47550 * 59.99805 * 10 9 8 42 42 H 1.08996 * 109.47235 * 180.02562 * 10 9 8 43 43 H 1.09002 * 109.47062 * 299.99672 * 11 6 5 44 44 H 1.08998 * 109.47372 * 60.00086 * 11 6 5 45 45 H 1.08997 * 109.59103 * 353.41268 * 15 14 12 46 46 H 1.09004 * 109.59096 * 113.84126 * 15 14 12 47 47 H 1.09002 * 109.56298 * 185.55014 * 16 15 14 48 48 H 1.09000 * 109.35453 * 65.49977 * 16 15 14 49 49 H 1.09003 * 109.46024 * 301.21838 * 17 16 15 50 50 H 0.96996 * 120.00185 * 264.93911 * 18 17 16 51 51 H 0.96997 * 119.99939 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.49316 * 178.68230 * 27 17 16 53 53 H 1.08996 * 109.49586 * 58.58942 * 27 17 16 54 54 H 1.09003 * 109.58385 * 246.16180 * 28 14 12 55 55 H 1.09001 * 109.59033 * 6.44174 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8374 5 8 1.6706 2.0783 -1.2252 6 6 1.5448 3.4985 -1.1282 7 6 1.9688 4.1397 -2.4510 8 6 1.8335 5.6601 -2.3473 9 6 0.3776 6.0233 -2.0480 10 6 -0.0464 5.3822 -0.7252 11 6 0.0891 3.8622 -0.8286 12 6 3.5411 1.4445 0.1343 13 8 4.2340 1.7604 -0.8096 14 7 4.1135 1.0954 1.3035 15 6 3.2939 0.6148 2.4241 16 6 3.6065 1.4512 3.6637 17 6 5.1134 1.4226 3.9290 18 7 5.4114 2.1996 5.1346 19 6 5.3144 1.6135 6.3684 20 1 5.0179 0.5784 6.4527 21 6 5.5962 2.3499 7.5108 22 7 5.9571 3.6115 7.4081 23 14 5.4632 1.5505 9.1939 24 1 6.3975 0.3987 9.2700 25 1 5.8131 2.5424 10.2420 26 1 4.0727 1.0749 9.4075 27 6 5.8548 2.0290 2.7353 28 6 5.5683 1.1938 1.4835 29 1 -0.3634 0.5907 0.8410 30 1 -0.3633 0.4330 -0.9320 31 1 -0.3634 -1.0236 0.0911 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1837 3.8658 -0.3250 35 1 1.3299 3.7724 -3.2541 36 1 3.0058 3.8806 -2.6644 37 1 2.1360 6.1169 -3.2895 38 1 2.4721 6.0278 -1.5441 39 1 0.2813 7.1065 -1.9737 40 1 -0.2610 5.6557 -2.8512 41 1 0.5922 5.7498 0.0780 42 1 -1.0837 5.6405 -0.5123 43 1 -0.5498 3.4949 -1.6318 44 1 -0.2130 3.4054 0.1138 45 1 2.2378 0.7153 2.1740 46 1 3.5261 -0.4312 2.6245 47 1 3.0778 1.0406 4.5239 48 1 3.2861 2.4794 3.4959 49 1 5.4375 0.3917 4.0721 50 1 5.6773 3.1294 5.0590 51 1 6.1544 4.1260 8.2064 52 1 6.9264 2.0296 2.9349 53 1 5.5133 3.0518 2.5764 54 1 5.9898 0.1960 1.6055 55 1 6.0128 1.6740 0.6117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996501546.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:14 Heat of formation + Delta-G solvation = -114.832766 kcal Electronic energy + Delta-G solvation = -31427.010021 eV Core-core repulsion = 27462.212813 eV Total energy + Delta-G solvation = -3964.797208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.66947 -40.04980 -38.74934 -37.51267 -36.22758 -34.68799 -33.64227 -32.11779 -31.72896 -31.05244 -30.57562 -28.27628 -26.39171 -24.54129 -24.12651 -23.61593 -23.21516 -22.81702 -21.58346 -20.75875 -20.27568 -19.08318 -18.63623 -17.95953 -17.07321 -16.76824 -16.44403 -16.20450 -15.62729 -15.48969 -15.39232 -15.36407 -15.10126 -15.00295 -14.85950 -14.66398 -14.33313 -13.97089 -13.78623 -13.77595 -13.35170 -13.24285 -13.17149 -13.13461 -12.90172 -12.80050 -12.67080 -12.23435 -12.21328 -12.20407 -12.06265 -12.04892 -11.99491 -11.88654 -11.74887 -11.65281 -11.47091 -11.33314 -11.28902 -10.95898 -10.84600 -10.18231 -9.71753 -9.00612 -7.92439 -5.21412 1.47974 1.49248 1.51438 1.57408 1.86555 2.56105 2.57853 3.35384 3.41109 3.68846 3.74807 3.78756 3.84566 3.88190 3.94043 4.01739 4.02915 4.13746 4.19395 4.25381 4.29227 4.32813 4.37019 4.41647 4.50854 4.53532 4.56349 4.62143 4.67184 4.70176 4.80618 4.81333 4.86908 4.91147 4.99033 5.00283 5.04907 5.09811 5.11301 5.17592 5.19203 5.20761 5.27485 5.29599 5.36300 5.44980 5.46610 5.47785 5.53876 5.59980 6.08509 6.28788 6.37680 7.08563 7.35008 8.10489 8.33450 9.31055 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.002726 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.198437 B =10267.486883 C =10833.878540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.080 3.920 4 H 0.096 0.904 5 O -0.361 6.361 6 C 0.088 3.912 7 C -0.112 4.112 8 C -0.116 4.116 9 C -0.118 4.118 10 C -0.119 4.119 11 C -0.131 4.131 12 C 0.485 3.515 13 O -0.573 6.573 14 N -0.603 5.603 15 C 0.108 3.892 16 C -0.142 4.142 17 C 0.174 3.826 18 N -0.739 5.739 19 C -0.235 4.235 20 H 0.081 0.919 21 C -0.078 4.078 22 N -0.973 5.973 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.301 1.301 26 H -0.275 1.275 27 C -0.127 4.127 28 C 0.122 3.878 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.052 0.948 50 H 0.369 0.631 51 H 0.249 0.751 52 H 0.071 0.929 53 H 0.047 0.953 54 H 0.085 0.915 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.950 -3.557 -19.175 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.018 3.982 4 H 0.114 0.886 5 O -0.279 6.279 6 C 0.031 3.969 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.169 4.169 12 C 0.274 3.726 13 O -0.452 6.452 14 N -0.338 5.338 15 C -0.014 4.014 16 C -0.182 4.182 17 C 0.066 3.934 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.099 0.901 21 C -0.270 4.270 22 N -0.624 5.624 23 Si 0.800 3.200 24 H -0.205 1.205 25 H -0.227 1.227 26 H -0.201 1.201 27 C -0.166 4.166 28 C -0.001 4.001 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.125 0.875 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.201 0.799 51 H 0.058 0.942 52 H 0.090 0.910 53 H 0.066 0.934 54 H 0.103 0.897 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.647 -3.630 -19.718 24.830 hybrid contribution 0.803 0.582 1.445 1.753 sum -13.844 -3.048 -18.273 23.127 Atomic orbital electron populations 1.21694 0.92838 1.03000 1.02500 1.21740 0.98576 0.91124 1.04057 1.22259 0.88743 0.97958 0.89217 0.88636 1.87978 1.88111 1.20169 1.31602 1.22248 0.96537 0.80143 0.98020 1.21543 1.01041 0.95830 0.96560 1.21518 0.97762 0.93879 1.02198 1.21563 0.95468 1.00913 0.97579 1.21521 1.02256 0.93986 0.97881 1.21976 0.95354 0.96989 1.02592 1.22010 0.92575 0.76109 0.81930 1.90652 1.65509 1.49715 1.39343 1.48297 1.08007 1.64480 1.12974 1.22021 0.95947 0.98893 0.84533 1.22396 0.98935 0.99612 0.97304 1.20403 0.92940 0.94846 0.85255 1.42660 1.81779 1.11758 1.01554 1.19602 1.36696 0.95646 0.84730 0.90149 1.25553 1.03348 0.96603 1.01492 1.69823 1.54935 1.09024 1.28583 0.85249 0.78151 0.76969 0.79631 1.20462 1.22719 1.20127 1.22052 1.00964 0.99004 0.94581 1.21499 0.80399 1.00869 0.97329 0.91778 0.92594 0.90762 0.91414 0.88194 0.94358 0.90751 0.93432 0.90441 0.92911 0.90787 0.90973 0.92740 0.90072 0.90461 0.91382 0.87485 0.88894 0.91029 0.93717 0.93032 0.79931 0.94212 0.90997 0.93430 0.89677 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.76 71.98 0.70 -1.18 16 2 C -0.12 -1.98 5.19 30.59 0.16 -1.82 16 3 C 0.08 1.77 1.48 29.85 0.04 1.82 16 4 H 0.10 1.89 7.04 -2.39 -0.02 1.87 16 5 O -0.36 -9.01 8.84 -130.17 -1.15 -10.16 16 6 C 0.09 1.99 2.39 30.59 0.07 2.06 16 7 C -0.11 -2.43 5.57 30.59 0.17 -2.26 16 8 C -0.12 -2.03 5.92 30.59 0.18 -1.85 16 9 C -0.12 -1.65 5.92 30.59 0.18 -1.47 16 10 C -0.12 -1.78 5.92 30.58 0.18 -1.60 16 11 C -0.13 -2.23 5.57 30.58 0.17 -2.06 16 12 C 0.49 13.95 6.86 87.66 0.60 14.55 16 13 O -0.57 -21.02 15.97 15.77 0.25 -20.76 16 14 N -0.60 -15.87 2.98 -819.73 -2.44 -18.31 16 15 C 0.11 2.38 5.11 86.22 0.44 2.83 16 16 C -0.14 -4.33 5.64 30.53 0.17 -4.15 16 17 C 0.17 6.33 2.73 45.02 0.12 6.46 16 18 N -0.74 -35.80 5.12 -322.83 -1.65 -37.45 16 19 C -0.23 -12.46 9.93 84.03 0.83 -11.63 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 23 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.13 -4.15 5.55 30.67 0.17 -3.98 16 28 C 0.12 3.42 6.42 86.36 0.55 3.97 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.05 0.83 7.97 -2.39 -0.02 0.81 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 1.38 5.78 -2.39 -0.01 1.37 16 34 H 0.04 1.00 7.67 -2.39 -0.02 0.98 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 45 H 0.11 1.81 4.69 -2.39 -0.01 1.80 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 50 H 0.37 19.76 7.80 -92.71 -0.72 19.04 16 51 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 52 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 53 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 54 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 55 H 0.08 2.37 7.03 -2.39 -0.02 2.36 16 Total: -1.00 -68.79 419.21 2.66 -66.13 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.12 Total: 36.47 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 5.23 Total: -4.22 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -3.81 Total: -114.40 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.90 Total: -30.92 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -68.79 2.66 -66.13 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996501546.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.706 kcal (2) G-P(sol) polarization free energy of solvation -68.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds