Wall clock time and date at job start Tue Mar 31 2020 22:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.08997 * 109.47969 * 59.97508 * 4 2 1 6 6 C 1.53090 * 109.47925 * 180.02562 * 4 2 1 7 7 C 1.53184 * 109.16228 * 177.59122 * 6 4 2 8 8 H 1.08993 * 109.54596 * 62.88318 * 7 6 4 9 9 C 1.50700 * 109.54415 * 183.15190 * 7 6 4 10 10 O 1.21289 * 120.00003 * 359.97438 * 9 7 6 11 11 N 1.34774 * 119.99808 * 179.97438 * 9 7 6 12 12 C 1.46500 * 119.99595 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.47528 * 324.99675 * 12 11 9 14 14 C 1.52999 * 109.47533 * 85.00154 * 12 11 9 15 15 C 1.52995 * 109.47333 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47083 * 299.99648 * 15 14 12 17 17 H 1.08995 * 109.47262 * 299.99895 * 16 15 14 18 18 N 1.46507 * 109.47285 * 179.97438 * 16 15 14 19 19 C 1.36936 * 119.99796 * 85.00163 * 18 16 15 20 20 H 1.08006 * 119.99962 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00182 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99422 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99994 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47459 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47063 * 120.00298 * 23 21 19 26 26 H 1.48501 * 109.46827 * 239.99781 * 23 21 19 27 27 C 1.53005 * 109.47164 * 60.00213 * 16 15 14 28 28 C 1.52998 * 109.46904 * 300.00243 * 27 16 15 29 29 C 1.53174 * 109.03190 * 303.01618 * 7 6 4 30 30 C 1.53097 * 109.16569 * 56.98246 * 29 7 6 31 31 O 1.42902 * 109.47685 * 299.94073 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 36 36 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 37 37 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 38 38 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 39 39 H 1.09007 * 109.52278 * 297.49237 * 6 4 2 40 40 H 1.08997 * 109.52410 * 57.62407 * 6 4 2 41 41 H 0.96994 * 120.00544 * 359.97438 * 11 9 7 42 42 H 1.09000 * 109.47135 * 299.99760 * 14 12 11 43 43 H 1.08998 * 109.46865 * 59.99523 * 14 12 11 44 44 H 1.09001 * 109.46954 * 179.97438 * 15 14 12 45 45 H 1.08998 * 109.47410 * 60.00009 * 15 14 12 46 46 H 0.96999 * 119.99929 * 265.00551 * 18 16 15 47 47 H 0.96996 * 119.99294 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.47168 * 179.97438 * 27 16 15 49 49 H 1.09004 * 109.46725 * 59.99512 * 27 16 15 50 50 H 1.09004 * 109.46833 * 299.99204 * 28 27 16 51 51 H 1.09001 * 109.46911 * 179.97438 * 28 27 16 52 52 H 1.09002 * 109.52379 * 176.88423 * 29 7 6 53 53 H 1.09000 * 109.52869 * 297.01079 * 29 7 6 54 54 H 1.09003 * 109.47887 * 62.37240 * 30 29 7 55 55 H 1.08994 * 109.48116 * 182.40256 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6764 -1.7489 1.2495 6 6 3.5709 -0.7209 1.2498 7 6 4.0735 -1.3912 2.5322 8 1 3.7513 -2.4323 2.5499 9 6 5.5784 -1.3265 2.5784 10 8 6.1907 -0.7972 1.6751 11 7 6.2439 -1.8569 3.6235 12 6 7.7068 -1.7935 3.6687 13 1 8.1061 -1.8910 2.6591 14 6 8.1412 -0.4516 4.2615 15 6 9.6690 -0.3858 4.3092 16 6 10.2016 -1.5247 5.1810 17 1 9.8020 -1.4271 6.1904 18 7 11.6646 -1.4620 5.2262 19 6 12.2873 -0.6501 6.1362 20 1 11.6998 -0.0562 6.8209 21 6 13.6735 -0.5902 6.1788 22 7 14.3893 -1.3143 5.3447 23 14 14.5228 0.5169 7.4206 24 1 13.5011 1.2201 8.2372 25 1 15.3861 -0.3044 8.3069 26 1 15.3567 1.5155 6.7046 27 6 9.7673 -2.8667 4.5881 28 6 8.2394 -2.9325 4.5403 29 6 3.4916 -0.6540 3.7422 30 6 1.9636 -0.6570 3.6455 31 8 1.5649 -0.0471 2.4162 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6768 1.9562 0.8900 39 1 3.9356 -1.2727 0.3833 40 1 3.9349 0.3056 1.2075 41 1 5.7543 -2.2799 4.3461 42 1 7.7614 0.3598 3.6408 43 1 7.7419 -0.3542 5.2711 44 1 9.9784 0.5704 4.7312 45 1 10.0686 -0.4834 3.2999 46 1 12.1921 -1.9956 4.6115 47 1 15.3579 -1.2722 5.3742 48 1 10.1471 -3.6781 5.2089 49 1 10.1668 -2.9643 3.5787 50 1 7.8398 -2.8350 5.5498 51 1 7.9300 -3.8884 4.1176 52 1 3.7994 -1.1579 4.6584 53 1 3.8548 0.3736 3.7521 54 1 1.5994 -1.6839 3.6772 55 1 1.5454 -0.0968 4.4817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034772156.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:16 Heat of formation + Delta-G solvation = -132.102059 kcal Electronic energy + Delta-G solvation = -30318.509376 eV Core-core repulsion = 26352.963315 eV Total energy + Delta-G solvation = -3965.546061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.56445 -40.28539 -39.15704 -36.39253 -36.18225 -34.89546 -34.40023 -32.37511 -31.70709 -30.98304 -29.12283 -28.03396 -26.80313 -25.48460 -24.52438 -23.66888 -22.95641 -22.04305 -21.19836 -20.71654 -20.61737 -19.13079 -18.16706 -17.41611 -17.14670 -16.91052 -16.61104 -16.13952 -15.89108 -15.80509 -15.42583 -15.19521 -15.11811 -15.07037 -14.74072 -14.49937 -14.47782 -13.98893 -13.84688 -13.48368 -13.30953 -13.16006 -13.10573 -12.91432 -12.86041 -12.71540 -12.52286 -12.43395 -12.31374 -12.17568 -12.11211 -12.04268 -11.75921 -11.67296 -11.59623 -11.48715 -11.45682 -11.26340 -11.19784 -10.89489 -10.79999 -10.30593 -10.02020 -9.00399 -7.94549 -5.22609 1.45786 1.46807 1.56527 1.63363 2.15644 2.55724 2.90467 3.38438 3.56447 3.59435 3.75555 3.78257 3.84540 3.89685 3.92478 4.07547 4.12717 4.26746 4.28291 4.35790 4.37717 4.39016 4.40936 4.51228 4.55590 4.58439 4.64434 4.72477 4.73337 4.79644 4.83960 4.86104 4.88920 4.99087 5.03310 5.05017 5.08545 5.10806 5.13308 5.16018 5.23844 5.24739 5.26571 5.29343 5.47011 5.48328 5.53840 5.54571 5.55714 5.62613 6.28456 6.37682 6.60455 7.30367 7.33739 8.11443 8.33670 9.29364 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026115 B = 0.001876 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.916008 B =14922.174978 C =15072.174854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.145 4.145 4 C 0.101 3.899 5 H 0.074 0.926 6 C -0.131 4.131 7 C -0.101 4.101 8 H 0.126 0.874 9 C 0.513 3.487 10 O -0.587 6.587 11 N -0.708 5.708 12 C 0.152 3.848 13 H 0.060 0.940 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.740 5.740 19 C -0.235 4.235 20 H 0.076 0.924 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.292 1.292 26 H -0.297 1.297 27 C -0.114 4.114 28 C -0.104 4.104 29 C -0.142 4.142 30 C 0.061 3.939 31 O -0.390 6.390 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.417 0.583 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.089 0.911 51 H 0.089 0.911 52 H 0.104 0.896 53 H 0.055 0.945 54 H 0.073 0.927 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.671 -3.892 -5.345 34.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.202 4.202 4 C 0.043 3.957 5 H 0.092 0.908 6 C -0.169 4.169 7 C -0.122 4.122 8 H 0.144 0.856 9 C 0.301 3.699 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.047 3.953 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.164 4.164 16 C 0.065 3.935 17 H 0.067 0.933 18 N -0.379 5.379 19 C -0.367 4.367 20 H 0.093 0.907 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.224 1.224 27 C -0.153 4.153 28 C -0.142 4.142 29 C -0.180 4.180 30 C -0.015 4.015 31 O -0.310 6.310 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.254 0.746 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.108 0.892 51 H 0.107 0.893 52 H 0.122 0.878 53 H 0.074 0.926 54 H 0.091 0.909 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -33.343 -3.240 -5.822 34.002 hybrid contribution 1.692 0.398 0.385 1.781 sum -31.651 -2.841 -5.437 32.240 Atomic orbital electron populations 1.21721 0.93817 1.02121 1.01939 1.21198 0.97069 0.96547 0.96083 1.21795 1.00334 0.96294 1.01775 1.22146 0.91219 0.96225 0.86072 0.90772 1.22070 0.96461 1.01458 0.96885 1.21412 0.89432 1.03542 0.97855 0.85627 1.21171 0.90972 0.76689 0.81092 1.90713 1.71015 1.45646 1.39275 1.45944 1.06768 1.59457 1.23810 1.20811 0.79832 0.95128 0.99513 0.92177 1.21740 0.94872 0.97158 1.01182 1.22031 0.94790 0.99951 0.99641 1.20491 0.82943 0.93421 0.96678 0.93301 1.42688 1.01685 1.51992 1.41491 1.19671 0.89895 1.17021 1.10125 0.90653 1.25557 0.97199 1.02476 1.01934 1.69829 1.04862 1.45938 1.41592 0.85104 0.78431 0.78025 0.78428 1.18967 1.21927 1.22445 1.21647 0.95956 0.96999 1.00676 1.21642 0.94026 0.97759 1.00794 1.22206 0.97628 1.00875 0.97332 1.22715 0.92422 0.99620 0.86766 1.87925 1.74574 1.54458 1.14012 0.92276 0.92728 0.92060 0.89452 0.93717 0.92225 0.92867 0.91093 0.92307 0.74582 0.93833 0.90460 0.94216 0.94532 0.79755 0.94159 0.91353 0.93091 0.89229 0.89279 0.87800 0.92588 0.90931 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.05 71.98 0.65 -0.91 16 2 C -0.09 -1.20 2.81 -10.79 -0.03 -1.23 16 3 C -0.14 -2.31 8.70 71.98 0.63 -1.68 16 4 C 0.10 1.35 2.38 30.63 0.07 1.43 16 5 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 6 C -0.13 -2.24 3.73 30.69 0.11 -2.13 16 7 C -0.10 -1.42 2.61 -11.42 -0.03 -1.45 16 8 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 9 C 0.51 11.29 7.12 87.66 0.62 11.92 16 10 O -0.59 -19.24 15.63 -3.06 -0.05 -19.29 16 11 N -0.71 -12.68 4.99 -442.52 -2.21 -14.88 16 12 C 0.15 3.72 2.45 44.99 0.11 3.83 16 13 H 0.06 1.84 7.58 -2.38 -0.02 1.83 16 14 C -0.11 -3.18 5.49 30.59 0.17 -3.02 16 15 C -0.12 -4.60 5.50 30.59 0.17 -4.43 16 16 C 0.17 6.69 2.77 44.99 0.12 6.82 16 17 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 18 N -0.74 -37.69 5.12 -322.92 -1.65 -39.34 16 19 C -0.24 -13.18 9.93 84.03 0.83 -12.35 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 22 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 23 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 27 C -0.11 -3.49 5.39 30.60 0.16 -3.33 16 28 C -0.10 -2.19 5.39 30.59 0.16 -2.03 16 29 C -0.14 -1.55 5.30 30.69 0.16 -1.39 16 30 C 0.06 0.57 6.84 72.01 0.49 1.06 16 31 O -0.39 -5.79 9.06 -148.98 -1.35 -7.14 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.72 7.68 -2.39 -0.02 0.71 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.83 6.38 -2.39 -0.02 0.81 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 39 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.06 1.33 6.19 -2.39 -0.01 1.32 16 41 H 0.42 4.18 8.12 -92.71 -0.75 3.43 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.37 20.44 7.80 -92.71 -0.72 19.72 16 47 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 48 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.10 0.61 7.70 -2.39 -0.02 0.59 16 53 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 55 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -74.00 419.59 1.32 -72.68 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.62 Total: 32.37 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.89 Total: -13.08 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -3.58 Total: -114.39 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.40 Total: -26.43 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.00 1.32 -72.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034772156.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.420 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds