Wall clock time and date at job start Tue Mar 31 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47476 * 2 1 4 4 H 1.09005 * 109.48722 * 304.96750 * 3 2 1 5 5 C 1.53089 * 109.48254 * 184.94139 * 3 2 1 6 6 C 1.53175 * 109.16485 * 182.40779 * 5 3 2 7 7 H 1.09008 * 109.61507 * 297.06903 * 6 5 3 8 8 C 1.53002 * 109.54521 * 176.84736 * 6 5 3 9 9 C 1.50701 * 109.47061 * 175.44129 * 8 6 5 10 10 O 1.21283 * 120.00052 * 359.97438 * 9 8 6 11 11 N 1.34770 * 119.99922 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00256 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46845 * 325.00694 * 12 11 9 14 14 C 1.53006 * 109.47249 * 84.99846 * 12 11 9 15 15 C 1.52997 * 109.47164 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46978 * 299.99874 * 15 14 12 17 17 H 1.08992 * 109.47056 * 300.00064 * 16 15 14 18 18 N 1.46505 * 109.46958 * 180.02562 * 16 15 14 19 19 C 1.36939 * 119.99584 * 85.00133 * 18 16 15 20 20 H 1.07993 * 120.00301 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99501 * 179.97438 * 19 18 16 22 22 N 1.31620 * 120.00187 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46963 * 59.99921 * 23 21 19 25 25 H 1.48499 * 109.47297 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47381 * 300.00021 * 23 21 19 27 27 C 1.52996 * 109.46891 * 60.00410 * 16 15 14 28 28 C 1.52997 * 109.47473 * 205.00145 * 12 11 9 29 29 C 1.53177 * 109.03605 * 56.97613 * 6 5 3 30 30 C 1.53088 * 109.16370 * 303.01977 * 29 6 5 31 31 O 1.42899 * 109.41486 * 57.61205 * 30 29 6 32 32 H 1.09004 * 109.46440 * 60.00493 * 1 2 3 33 33 H 1.09001 * 109.47344 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47404 * 300.00667 * 1 2 3 35 35 H 1.08995 * 109.47404 * 239.99333 * 2 1 3 36 36 H 1.09002 * 109.46911 * 119.99304 * 2 1 3 37 37 H 1.09000 * 109.52025 * 62.49896 * 5 3 2 38 38 H 1.09002 * 109.51818 * 302.31011 * 5 3 2 39 39 H 1.08991 * 109.46961 * 55.44119 * 8 6 5 40 40 H 1.09000 * 109.46564 * 295.43935 * 8 6 5 41 41 H 0.97005 * 120.00370 * 0.02562 * 11 9 8 42 42 H 1.09001 * 109.47002 * 60.00085 * 14 12 11 43 43 H 1.09000 * 109.47050 * 300.00351 * 14 12 11 44 44 H 1.09002 * 109.47045 * 180.02562 * 15 14 12 45 45 H 1.09001 * 109.47375 * 59.99966 * 15 14 12 46 46 H 0.97001 * 119.99745 * 265.00017 * 18 16 15 47 47 H 0.96998 * 120.00284 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.47368 * 179.97438 * 27 16 15 49 49 H 1.09001 * 109.47372 * 59.99964 * 27 16 15 50 50 H 1.09002 * 109.47153 * 59.99757 * 28 12 11 51 51 H 1.09001 * 109.46832 * 299.99948 * 28 12 11 52 52 H 1.08998 * 109.52279 * 62.93233 * 29 6 5 53 53 H 1.09000 * 109.52097 * 183.05739 * 29 6 5 54 54 H 1.09004 * 109.47998 * 177.59103 * 30 29 6 55 55 H 1.08996 * 109.48510 * 297.61556 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6061 1.9817 -0.8421 5 6 3.5659 1.4445 -0.1243 6 6 4.0735 2.8884 -0.0631 7 1 3.6814 3.4504 -0.9108 8 6 5.6029 2.8956 -0.1075 9 6 6.0972 4.3183 -0.1601 10 8 5.3043 5.2360 -0.1624 11 7 7.4203 4.5707 -0.2047 12 6 7.9009 5.9537 -0.2553 13 1 7.2083 6.5578 -0.8414 14 6 7.9905 6.5148 1.1654 15 6 8.4918 7.9594 1.1125 16 6 9.8761 7.9953 0.4616 17 1 10.5688 7.3915 1.0477 18 7 10.3564 9.3785 0.4116 19 6 10.9959 9.9207 1.4942 20 1 11.1465 9.3287 2.3848 21 6 11.4514 11.2311 1.4466 22 7 11.2682 11.9525 0.3610 23 14 12.3244 11.9707 2.9231 24 1 13.5431 11.1780 3.2259 25 1 12.7080 13.3730 2.6202 26 1 11.4157 11.9493 4.0974 27 6 9.7864 7.4343 -0.9589 28 6 9.2851 5.9892 -0.9059 29 6 3.5958 3.5309 1.2428 30 6 2.0688 3.4484 1.3142 31 8 1.6621 2.0817 1.2209 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 3.8544 0.9969 -1.0754 38 1 3.9988 0.8711 0.6954 39 1 5.9431 2.3598 -0.9936 40 1 5.9945 2.4076 0.7850 41 1 8.0545 3.8367 -0.2033 42 1 8.6831 5.9107 1.7515 43 1 7.0043 6.4896 1.6289 44 1 8.5561 8.3589 2.1246 45 1 7.7990 8.5632 0.5264 46 1 10.2214 9.9100 -0.3885 47 1 11.5862 12.8683 0.3278 48 1 10.7724 7.4603 -1.4228 49 1 9.0935 8.0382 -1.5450 50 1 9.2213 5.5895 -1.9180 51 1 9.9777 5.3851 -0.3198 52 1 4.0294 2.9998 2.0901 53 1 3.9066 4.5753 1.2698 54 1 1.7261 3.8658 2.2610 55 1 1.6351 4.0139 0.4895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034772903.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:57 Heat of formation + Delta-G solvation = -135.087917 kcal Electronic energy + Delta-G solvation = -29820.297677 eV Core-core repulsion = 25854.622140 eV Total energy + Delta-G solvation = -3965.675537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.32124 -40.34484 -39.21810 -36.43765 -35.53018 -34.85809 -34.60782 -32.51002 -31.69143 -30.75761 -30.16460 -28.50979 -25.74879 -25.03427 -24.39922 -23.63780 -22.63017 -21.92939 -21.36034 -21.04593 -20.60367 -19.11821 -17.96432 -17.36815 -17.31983 -16.86867 -16.77007 -16.43912 -15.87970 -15.55505 -15.49902 -15.39733 -15.06264 -14.96970 -14.57606 -14.48323 -14.21898 -14.03262 -13.90340 -13.61546 -13.37020 -13.14939 -13.09004 -12.83469 -12.75983 -12.65050 -12.48235 -12.40808 -12.27213 -12.16249 -12.05617 -12.03002 -11.96098 -11.72314 -11.65357 -11.45851 -11.41657 -11.20307 -11.14353 -10.85600 -10.68894 -10.28622 -9.95018 -8.99789 -7.93639 -5.21899 1.46215 1.49254 1.55231 1.74379 2.25024 2.56570 2.87802 3.39003 3.62750 3.69373 3.76808 3.82187 3.84978 3.91256 4.03213 4.12359 4.24441 4.28161 4.30608 4.37163 4.40698 4.41533 4.45278 4.52747 4.55102 4.58003 4.59465 4.66399 4.72077 4.77992 4.84944 4.85983 4.93587 4.98950 5.00633 5.05898 5.12220 5.13261 5.14911 5.19343 5.24127 5.24844 5.27740 5.30370 5.45111 5.47589 5.48870 5.54570 5.60756 5.64721 6.28865 6.34929 6.68643 7.34291 7.39824 8.12127 8.34485 9.29792 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028900 B = 0.001729 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.629452 B =16189.750255 C =16730.594952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.081 3.919 4 H 0.051 0.949 5 C -0.137 4.137 6 C -0.072 4.072 7 H 0.060 0.940 8 C -0.126 4.126 9 C 0.505 3.495 10 O -0.582 6.582 11 N -0.714 5.714 12 C 0.153 3.847 13 H 0.060 0.940 14 C -0.110 4.110 15 C -0.123 4.123 16 C 0.172 3.828 17 H 0.048 0.952 18 N -0.739 5.739 19 C -0.239 4.239 20 H 0.075 0.925 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.275 1.275 25 H -0.296 1.296 26 H -0.281 1.281 27 C -0.114 4.114 28 C -0.105 4.105 29 C -0.152 4.152 30 C 0.063 3.937 31 O -0.395 6.395 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.417 0.583 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.066 0.934 49 H 0.050 0.950 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.068 0.932 53 H 0.068 0.932 54 H 0.094 0.906 55 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -30.510 -3.489 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.024 3.976 4 H 0.069 0.931 5 C -0.174 4.174 6 C -0.091 4.091 7 H 0.079 0.921 8 C -0.166 4.166 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.365 5.365 12 C 0.048 3.952 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.164 4.164 16 C 0.064 3.936 17 H 0.066 0.934 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.093 0.907 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.208 1.208 27 C -0.153 4.153 28 C -0.143 4.143 29 C -0.190 4.190 30 C -0.013 4.013 31 O -0.314 6.314 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.254 0.746 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.069 0.931 50 H 0.106 0.894 51 H 0.106 0.894 52 H 0.086 0.914 53 H 0.086 0.914 54 H 0.112 0.888 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.309 -29.957 -3.184 34.257 hybrid contribution 0.702 1.596 0.414 1.792 sum -15.607 -28.362 -2.770 32.491 Atomic orbital electron populations 1.21717 0.95639 1.01935 1.01520 1.21569 0.96432 0.93502 1.03513 1.22323 0.94322 0.94523 0.86422 0.93080 1.22244 0.95369 0.95590 1.04234 1.20906 0.94048 0.96454 0.97687 0.92126 1.21758 0.96136 0.91926 1.06751 1.21372 0.82100 0.92633 0.74579 1.90684 1.55832 1.48599 1.51084 1.46006 1.07301 1.08532 1.74699 1.20765 0.95887 0.82863 0.95682 0.92156 1.21745 1.00337 0.95579 0.97297 1.22029 0.98500 0.95837 1.00029 1.20489 0.92636 0.85004 0.95434 0.93443 1.42668 1.68486 1.10783 1.15921 1.19600 1.27559 0.95455 0.94497 0.90723 1.25546 1.03617 0.97581 1.00210 1.69814 1.53783 1.09309 1.29261 0.85244 0.78675 0.77014 0.79043 1.20132 1.22255 1.20753 1.21651 1.01196 0.96226 0.96200 1.21649 0.94497 0.96089 1.02057 1.22281 0.96407 1.02163 0.98130 1.22526 0.94171 0.82690 1.01951 1.87890 1.79022 1.24956 1.39568 0.92910 0.91704 0.93596 0.88696 0.91274 0.88679 0.90232 0.85848 0.86732 0.74612 0.90662 0.93544 0.94289 0.94499 0.79768 0.94141 0.91504 0.93074 0.89378 0.89399 0.91366 0.91358 0.88755 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.81 71.98 0.71 -1.01 16 2 C -0.11 -1.17 5.64 30.59 0.17 -1.00 16 3 C 0.08 1.12 2.64 30.62 0.08 1.21 16 4 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 5 C -0.14 -1.44 4.70 30.68 0.14 -1.30 16 6 C -0.07 -1.07 1.92 -10.68 -0.02 -1.09 16 7 H 0.06 1.14 7.96 -2.38 -0.02 1.12 16 8 C -0.13 -1.43 5.18 29.85 0.15 -1.28 16 9 C 0.50 10.14 7.53 87.66 0.66 10.80 16 10 O -0.58 -17.46 13.64 -3.04 -0.04 -17.50 16 11 N -0.71 -12.20 5.08 -442.53 -2.25 -14.45 16 12 C 0.15 3.68 2.45 44.99 0.11 3.79 16 13 H 0.06 1.81 7.58 -2.39 -0.02 1.80 16 14 C -0.11 -3.14 5.49 30.60 0.17 -2.97 16 15 C -0.12 -4.57 5.50 30.59 0.17 -4.41 16 16 C 0.17 6.70 2.77 44.99 0.12 6.83 16 17 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 18 N -0.74 -37.77 5.12 -322.95 -1.65 -39.43 16 19 C -0.24 -13.44 9.93 84.03 0.83 -12.60 16 20 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 23 Si 0.97 46.70 29.55 68.60 2.03 48.73 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C -0.11 -3.51 5.39 30.61 0.17 -3.35 16 28 C -0.10 -2.22 5.39 30.61 0.17 -2.06 16 29 C -0.15 -2.86 5.12 30.68 0.16 -2.70 16 30 C 0.06 1.18 6.84 72.01 0.49 1.68 16 31 O -0.39 -7.49 9.94 -148.98 -1.48 -8.97 16 32 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 34 H 0.04 0.67 7.82 -2.39 -0.02 0.65 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.42 3.97 8.60 -92.70 -0.80 3.18 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.37 20.46 7.80 -92.71 -0.72 19.74 16 47 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.07 1.68 6.03 -2.39 -0.01 1.66 16 54 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 55 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -73.08 422.40 0.97 -72.12 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.67 Total: 33.06 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.75 Total: -13.50 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.62 Total: -113.93 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.52 Total: -26.47 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -73.08 0.97 -72.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034772903.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.970 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds