Wall clock time and date at job start Tue Mar 31 2020 22:27:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 H 1.09004 * 109.49591 * 304.99515 * 3 2 1
5 5 C 1.53188 * 109.49955 * 65.06231 * 3 2 1
6 6 N 1.46932 * 108.77143 * 174.55259 * 5 3 2
7 7 C 1.34779 * 120.59884 * 126.42572 * 6 5 3
8 8 O 1.21277 * 120.00407 * 0.02562 * 7 6 5
9 9 C 1.50701 * 119.99522 * 180.02562 * 7 6 5
10 10 O 1.42899 * 109.47105 * 179.97438 * 9 7 6
11 11 C 1.42900 * 114.00176 * 179.97438 * 10 9 7
12 12 C 1.52999 * 109.47273 * 270.00416 * 11 10 9
13 13 C 1.53006 * 109.47133 * 179.97438 * 12 11 10
14 14 C 1.53002 * 109.46956 * 59.99800 * 13 12 11
15 15 C 1.52999 * 109.47362 * 300.00059 * 14 13 12
16 16 C 1.53002 * 109.46950 * 150.00135 * 11 10 9
17 17 C 1.46919 * 118.76638 * 306.44394 * 6 5 3
18 18 C 1.53194 * 108.77515 * 53.59094 * 17 6 5
19 19 C 1.53038 * 109.49791 * 184.93493 * 3 2 1
20 20 H 1.08998 * 109.45979 * 298.70110 * 19 3 2
21 21 N 1.46503 * 109.46255 * 58.66021 * 19 3 2
22 22 C 1.36935 * 120.00042 * 205.00506 * 21 19 3
23 23 H 1.07997 * 120.00201 * 359.97438 * 22 21 19
24 24 C 1.38813 * 119.99796 * 180.02562 * 22 21 19
25 25 N 1.31621 * 120.00082 * 179.97438 * 24 22 21
26 26 Si 1.86801 * 120.00238 * 359.97438 * 24 22 21
27 27 H 1.48490 * 109.47282 * 89.99928 * 26 24 22
28 28 H 1.48499 * 109.47313 * 210.00428 * 26 24 22
29 29 H 1.48499 * 109.46982 * 330.00235 * 26 24 22
30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3
35 35 H 1.09001 * 109.58810 * 294.37827 * 5 3 2
36 36 H 1.08998 * 109.58605 * 54.80070 * 5 3 2
37 37 H 1.08995 * 109.47590 * 299.99738 * 9 7 6
38 38 H 1.09004 * 109.47353 * 59.99716 * 9 7 6
39 39 H 1.08999 * 109.46919 * 30.00256 * 11 10 9
40 40 H 1.08999 * 109.47017 * 299.99780 * 12 11 10
41 41 H 1.08997 * 109.47364 * 59.99859 * 12 11 10
42 42 H 1.09000 * 109.46994 * 300.00384 * 13 12 11
43 43 H 1.08992 * 109.47229 * 180.02562 * 13 12 11
44 44 H 1.08996 * 109.46872 * 179.97438 * 14 13 12
45 45 H 1.08999 * 109.47210 * 60.00131 * 14 13 12
46 46 H 1.08999 * 109.47017 * 300.00191 * 15 14 13
47 47 H 1.08997 * 109.47364 * 180.02562 * 15 14 13
48 48 H 1.08992 * 109.47336 * 300.00329 * 16 11 10
49 49 H 1.09000 * 109.46792 * 60.00627 * 16 11 10
50 50 H 1.09000 * 109.59170 * 293.79931 * 17 6 5
51 51 H 1.09000 * 109.58738 * 173.37358 * 17 6 5
52 52 H 1.08996 * 109.49677 * 185.41519 * 18 17 6
53 53 H 1.08994 * 109.52938 * 65.32856 * 18 17 6
54 54 H 0.96999 * 119.99857 * 24.99498 * 21 19 3
55 55 H 0.97000 * 120.00139 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6057 1.9820 -0.8418
5 6 1.6364 2.1276 1.3094
6 7 2.2437 3.4649 1.3500
7 6 1.4840 4.5571 1.5658
8 8 0.2878 4.4412 1.7290
9 6 2.1210 5.9223 1.6042
10 8 1.1166 6.9100 1.8450
11 6 1.6178 8.2470 1.9010
12 6 2.0029 8.5874 3.3421
13 6 2.5402 10.0188 3.4020
14 6 1.4602 10.9894 2.9198
15 6 1.0751 10.6490 1.4787
16 6 0.5374 9.2173 1.4191
17 6 3.6940 3.5893 1.1507
18 6 4.0738 2.8881 -0.1573
19 6 3.5653 1.4451 -0.1241
20 1 4.0000 0.9264 0.7304
21 7 3.9557 0.7615 -1.3597
22 6 5.1939 0.1857 -1.4618
23 1 5.8828 0.2358 -0.6317
24 6 5.5639 -0.4615 -2.6328
25 7 6.7542 -1.0145 -2.7312
26 14 4.3725 -0.5475 -4.0690
27 1 4.5734 0.6308 -4.9501
28 1 4.6180 -1.7914 -4.8421
29 1 2.9787 -0.5503 -3.5565
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 0.5139 0.8900
33 1 1.8934 -0.5137 0.8900
34 1 1.8934 -0.5138 -0.8899
35 1 0.5511 2.2169 1.3557
36 1 1.9930 1.5391 2.1547
37 1 2.8621 5.9552 2.4028
38 1 2.6066 6.1238 0.6494
39 1 2.4955 8.3332 1.2604
40 1 1.1253 8.5012 3.9827
41 1 2.7726 7.8962 3.6855
42 1 3.4179 10.1045 2.7614
43 1 2.8149 10.2611 4.4285
44 1 1.8427 12.0091 2.9629
45 1 0.5824 10.9037 3.5603
46 1 1.9528 10.7347 0.8382
47 1 0.3060 11.3408 1.1351
48 1 0.2631 8.9748 0.3925
49 1 -0.3402 9.1311 2.0598
50 1 4.2188 3.1198 1.9828
51 1 3.9658 4.6432 1.0926
52 1 5.1580 2.8893 -0.2691
53 1 3.6208 3.4142 -0.9975
54 1 3.3370 0.7168 -2.1054
55 1 7.0126 -1.4671 -3.5493
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037874916.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:35
Heat of formation + Delta-G solvation = -113.138152 kcal
Electronic energy + Delta-G solvation = -30630.889680 eV
Core-core repulsion = 26666.165956 eV
Total energy + Delta-G solvation = -3964.723724 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.36 seconds
Orbital eigenvalues (eV)
-41.44085 -40.12604 -39.12725 -37.21927 -36.29544 -35.37819 -33.61072 -31.73492
-31.55814 -31.24085 -30.31556 -28.54225 -26.30908 -25.11044 -24.10417 -23.50851
-23.10720 -22.21037 -21.41766 -20.88264 -20.28819 -19.42871 -18.49086 -17.57580
-17.07330 -17.06095 -16.72482 -16.19394 -16.02464 -15.69856 -15.34414 -15.22197
-15.02391 -14.76980 -14.69840 -14.57353 -14.53475 -14.09465 -13.96947 -13.84087
-13.56281 -13.30094 -13.21196 -13.08070 -13.02704 -12.89102 -12.68388 -12.57770
-12.17219 -12.06061 -12.02944 -11.97633 -11.85180 -11.64220 -11.57279 -11.49664
-11.46884 -11.24124 -11.13739 -10.95505 -10.72264 -10.41758 -9.71159 -9.25970
-7.99240 -5.30725 1.38563 1.39176 1.46685 1.51776 1.70060 2.49551
2.78001 3.32508 3.46271 3.55488 3.73125 3.78835 3.81921 3.95921
3.98046 4.07569 4.11393 4.19340 4.23201 4.28481 4.30587 4.33592
4.36595 4.40094 4.44924 4.56631 4.58762 4.60320 4.66971 4.68801
4.78258 4.80834 4.85678 4.94902 4.98748 5.01915 5.04827 5.13055
5.15113 5.23340 5.23985 5.24621 5.31657 5.32907 5.39530 5.44003
5.48996 5.51872 5.62429 5.81544 6.14742 6.25029 6.38467 7.10683
7.11083 7.88213 8.06202 9.22180
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.015789 B = 0.002374 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1772.954784 B =11792.492217 C =12607.382566
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.112 4.112
3 C -0.097 4.097
4 H 0.060 0.940
5 C 0.126 3.874
6 N -0.605 5.605
7 C 0.511 3.489
8 O -0.573 6.573
9 C 0.047 3.953
10 O -0.389 6.389
11 C 0.084 3.916
12 C -0.140 4.140
13 C -0.114 4.114
14 C -0.123 4.123
15 C -0.112 4.112
16 C -0.117 4.117
17 C 0.112 3.888
18 C -0.145 4.145
19 C 0.181 3.819
20 H 0.050 0.950
21 N -0.748 5.748
22 C -0.215 4.215
23 H 0.064 0.936
24 C -0.063 4.063
25 N -0.983 5.983
26 Si 0.944 3.056
27 H -0.283 1.283
28 H -0.301 1.301
29 H -0.255 1.255
30 H 0.061 0.939
31 H 0.048 0.952
32 H 0.062 0.938
33 H 0.066 0.934
34 H 0.050 0.950
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.106 0.894
38 H 0.100 0.900
39 H 0.077 0.923
40 H 0.057 0.943
41 H 0.068 0.932
42 H 0.072 0.928
43 H 0.072 0.928
44 H 0.076 0.924
45 H 0.058 0.942
46 H 0.071 0.929
47 H 0.074 0.926
48 H 0.061 0.939
49 H 0.058 0.942
50 H 0.088 0.912
51 H 0.111 0.889
52 H 0.069 0.931
53 H 0.055 0.945
54 H 0.362 0.638
55 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.344 22.608 12.623 27.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.150 4.150
3 C -0.117 4.117
4 H 0.079 0.921
5 C 0.003 3.997
6 N -0.338 5.338
7 C 0.300 3.700
8 O -0.453 6.453
9 C -0.032 4.032
10 O -0.308 6.308
11 C 0.027 3.973
12 C -0.178 4.178
13 C -0.152 4.152
14 C -0.161 4.161
15 C -0.150 4.150
16 C -0.155 4.155
17 C -0.010 4.010
18 C -0.186 4.186
19 C 0.073 3.927
20 H 0.068 0.932
21 N -0.390 5.390
22 C -0.346 4.346
23 H 0.082 0.918
24 C -0.254 4.254
25 N -0.635 5.635
26 Si 0.773 3.227
27 H -0.209 1.209
28 H -0.228 1.228
29 H -0.180 1.180
30 H 0.080 0.920
31 H 0.067 0.933
32 H 0.081 0.919
33 H 0.085 0.915
34 H 0.069 0.931
35 H 0.103 0.897
36 H 0.100 0.900
37 H 0.124 0.876
38 H 0.118 0.882
39 H 0.095 0.905
40 H 0.076 0.924
41 H 0.087 0.913
42 H 0.090 0.910
43 H 0.091 0.909
44 H 0.094 0.906
45 H 0.077 0.923
46 H 0.090 0.910
47 H 0.093 0.907
48 H 0.080 0.920
49 H 0.077 0.923
50 H 0.106 0.894
51 H 0.129 0.871
52 H 0.087 0.913
53 H 0.074 0.926
54 H 0.194 0.806
55 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -10.966 22.442 12.810 28.071
hybrid contribution -0.025 -0.735 -1.385 1.568
sum -10.991 21.707 11.425 26.880
Atomic orbital electron populations
1.21797 0.94861 1.02023 1.01826 1.21423 0.96118 0.95183 1.02287
1.21692 0.95564 0.96644 0.97760 0.92133 1.21627 0.99339 0.81754
0.96974 1.48181 1.09098 1.06188 1.70380 1.20818 0.86582 0.86752
0.75811 1.90675 1.16703 1.86953 1.50929 1.22383 0.91315 0.85648
1.03868 1.88013 1.33707 1.15862 1.93204 1.22386 0.97384 0.80596
0.96951 1.22033 1.01291 0.98098 0.96357 1.21498 0.98514 0.92992
1.02174 1.21593 0.98870 0.99568 0.96020 1.21507 1.01585 0.94347
0.97538 1.21609 0.97941 0.94644 1.01301 1.21972 0.78329 1.02972
0.97767 1.22466 1.01635 0.97238 0.97252 1.20409 0.92349 0.91536
0.88384 0.93167 1.42801 1.14864 1.66539 1.14765 1.19000 0.91201
1.25405 0.98969 0.91850 1.25364 0.98107 1.01239 1.00699 1.69860
1.21573 1.43803 1.28235 0.85562 0.80122 0.76692 0.80299 1.20939
1.22767 1.18004 0.91992 0.93330 0.91948 0.91515 0.93073 0.89659
0.90040 0.87589 0.88197 0.90492 0.92429 0.91322 0.90979 0.90918
0.90567 0.92346 0.90994 0.90749 0.91974 0.92338 0.89395 0.87136
0.91254 0.92608 0.80551 0.93599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.63 9.67 71.98 0.70 -2.94 16
2 C -0.11 -3.26 5.31 30.60 0.16 -3.10 16
3 C -0.10 -2.83 1.92 -10.72 -0.02 -2.85 16
4 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16
5 C 0.13 3.26 5.32 86.36 0.46 3.72 16
6 N -0.60 -14.66 2.97 -818.91 -2.43 -17.09 16
7 C 0.51 13.75 7.77 87.66 0.68 14.43 16
8 O -0.57 -20.59 15.91 16.02 0.25 -20.33 16
9 C 0.05 0.90 4.57 71.24 0.33 1.23 16
10 O -0.39 -9.17 9.52 -129.94 -1.24 -10.41 16
11 C 0.08 1.36 2.61 30.59 0.08 1.44 16
12 C -0.14 -1.94 5.54 30.60 0.17 -1.77 16
13 C -0.11 -1.13 5.92 30.60 0.18 -0.95 16
14 C -0.12 -1.20 5.92 30.59 0.18 -1.01 16
15 C -0.11 -1.20 5.93 30.61 0.18 -1.02 16
16 C -0.12 -1.84 5.58 30.61 0.17 -1.67 16
17 C 0.11 2.26 6.34 86.36 0.55 2.81 16
18 C -0.15 -4.14 5.66 30.67 0.17 -3.96 16
19 C 0.18 6.14 2.19 45.02 0.10 6.24 16
20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16
21 N -0.75 -32.52 4.14 -322.81 -1.34 -33.85 16
22 C -0.21 -11.51 10.41 84.03 0.87 -10.64 16
23 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16
24 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16
25 N -0.98 -61.62 13.97 21.65 0.30 -61.32 16
26 Si 0.94 44.99 27.74 68.60 1.90 46.89 16
27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
28 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16
29 H -0.26 -11.08 6.52 99.48 0.65 -10.44 16
30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
32 H 0.06 1.42 6.70 -2.38 -0.02 1.40 16
33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
34 H 0.05 1.77 7.22 -2.39 -0.02 1.75 16
35 H 0.09 2.40 5.72 -2.39 -0.01 2.38 16
36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
37 H 0.11 1.42 7.67 -2.39 -0.02 1.40 16
38 H 0.10 1.51 7.64 -2.39 -0.02 1.49 16
39 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16
40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
41 H 0.07 0.87 7.87 -2.39 -0.02 0.85 16
42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
44 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16
45 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
48 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
50 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
51 H 0.11 1.52 5.93 -2.39 -0.01 1.51 16
52 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
53 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
54 H 0.36 15.70 5.37 -92.71 -0.50 15.20 16
55 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
Total: -1.00 -72.17 415.93 3.17 -69.00
By element:
Atomic # 1 Polarization: 29.98 SS G_CDS: 0.29 Total: 30.27 kcal
Atomic # 6 Polarization: -8.58 SS G_CDS: 5.43 Total: -3.15 kcal
Atomic # 7 Polarization: -108.80 SS G_CDS: -3.47 Total: -112.27 kcal
Atomic # 8 Polarization: -29.76 SS G_CDS: -0.98 Total: -30.74 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal
Total: -72.17 3.17 -69.00 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037874916.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.135 kcal
(2) G-P(sol) polarization free energy of solvation -72.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.308 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.36 seconds