Wall clock time and date at job start Tue Mar 31 2020 22:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46807 * 2 1 4 4 H 1.08997 * 109.52790 * 54.92136 * 3 2 1 5 5 C 1.53197 * 109.49817 * 294.83632 * 3 2 1 6 6 N 1.46921 * 108.77527 * 185.41482 * 5 3 2 7 7 C 1.34782 * 120.63202 * 233.63490 * 6 5 3 8 8 O 1.21274 * 120.00016 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99632 * 180.02562 * 7 6 5 10 10 O 1.42907 * 109.46483 * 179.97438 * 9 7 6 11 11 C 1.42902 * 113.99356 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47273 * 269.99717 * 11 10 9 13 13 C 1.53001 * 109.47409 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46846 * 60.00224 * 13 12 11 15 15 C 1.53003 * 109.47428 * 300.00099 * 14 13 12 16 16 C 1.52999 * 109.46859 * 59.99941 * 15 14 13 17 17 C 1.46927 * 118.73848 * 53.61343 * 6 5 3 18 18 C 1.53192 * 108.77485 * 306.39105 * 17 6 5 19 19 C 1.53036 * 109.31556 * 54.63581 * 18 17 6 20 20 H 1.08997 * 109.45248 * 178.62583 * 19 18 17 21 21 N 1.46500 * 109.46251 * 58.65158 * 19 18 17 22 22 C 1.36935 * 119.99795 * 84.93172 * 21 19 18 23 23 H 1.08006 * 119.99956 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00104 * 180.02562 * 22 21 19 25 25 N 1.31615 * 120.00002 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00116 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47261 * 239.99934 * 26 24 22 29 29 H 1.48500 * 109.47454 * 119.99927 * 26 24 22 30 30 H 1.09004 * 109.46509 * 299.99921 * 1 2 3 31 31 H 1.08994 * 109.47229 * 59.99775 * 1 2 3 32 32 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46509 * 240.00079 * 2 1 3 34 34 H 1.08994 * 109.47229 * 120.00224 * 2 1 3 35 35 H 1.08995 * 109.58660 * 305.20366 * 5 3 2 36 36 H 1.08999 * 109.58011 * 65.48984 * 5 3 2 37 37 H 1.08993 * 109.47265 * 299.99750 * 9 7 6 38 38 H 1.09001 * 109.47346 * 60.00123 * 9 7 6 39 39 H 1.08996 * 109.47539 * 30.00165 * 11 10 9 40 40 H 1.08996 * 109.47708 * 300.00811 * 12 11 10 41 41 H 1.09001 * 109.47007 * 60.00487 * 12 11 10 42 42 H 1.08996 * 109.47264 * 300.00363 * 13 12 11 43 43 H 1.08997 * 109.47183 * 180.02562 * 13 12 11 44 44 H 1.08997 * 109.47372 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.47384 * 60.00372 * 14 13 12 46 46 H 1.09001 * 109.47060 * 300.00471 * 15 14 13 47 47 H 1.08994 * 109.47127 * 180.02562 * 15 14 13 48 48 H 1.08996 * 109.47305 * 180.02562 * 16 15 14 49 49 H 1.08996 * 109.47290 * 60.00292 * 16 15 14 50 50 H 1.08998 * 109.58977 * 66.17988 * 17 6 5 51 51 H 1.09002 * 109.59192 * 186.46007 * 17 6 5 52 52 H 1.09003 * 109.49985 * 294.68205 * 18 17 6 53 53 H 1.09003 * 109.49799 * 174.58853 * 18 17 6 54 54 H 0.96997 * 120.00022 * 264.93646 * 21 19 18 55 55 H 0.97004 * 120.00335 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8407 5 6 1.6385 2.1268 -1.3106 6 7 2.2450 3.4643 -1.3507 7 6 1.4855 4.5565 -1.5673 8 8 0.2894 4.4407 -1.7307 9 6 2.1227 5.9217 -1.6062 10 8 1.1186 6.9091 -1.8489 11 6 1.6199 8.2462 -1.9045 12 6 1.5903 8.8606 -0.5036 13 6 2.1264 10.2924 -0.5631 14 6 1.2532 11.1252 -1.5038 15 6 1.2827 10.5108 -2.9048 16 6 0.7466 9.0791 -2.8451 17 6 3.6952 3.5888 -1.1500 18 6 4.0736 2.8881 0.1587 19 6 3.5653 1.4450 0.1256 20 1 3.8546 0.9371 1.0456 21 7 4.1507 0.7475 -1.0220 22 6 5.3885 0.1718 -0.9147 23 1 5.9331 0.2317 0.0161 24 6 5.9434 -0.4886 -2.0022 25 7 5.2800 -0.5612 -3.1366 26 14 7.6317 -1.2745 -1.8556 27 1 8.1637 -1.0531 -0.4869 28 1 8.5507 -0.6621 -2.8484 29 1 7.5232 -2.7326 -2.1151 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.9965 1.5377 -2.1549 36 1 0.5531 2.2138 -1.3596 37 1 2.6080 6.1235 -0.6514 38 1 2.8641 5.9540 -2.4046 39 1 2.6450 8.2349 -2.2746 40 1 0.5652 8.8720 -0.1333 41 1 2.2120 8.2671 0.1667 42 1 3.1514 10.2814 -0.9334 43 1 2.1057 10.7299 0.4350 44 1 1.6353 12.1450 -1.5466 45 1 0.2281 11.1362 -1.1335 46 1 2.3078 10.4998 -3.2751 47 1 0.6610 11.1044 -3.5749 48 1 0.7681 8.6412 -3.8430 49 1 -0.2784 9.0900 -2.4748 50 1 4.2208 3.1190 -1.9812 51 1 3.9674 4.6428 -1.0945 52 1 3.6193 3.4147 0.9980 53 1 5.1578 2.8894 0.2717 54 1 3.6614 0.6935 -1.8578 55 1 4.4035 -0.1528 -3.2129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037874918.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:39 Heat of formation + Delta-G solvation = -112.859868 kcal Electronic energy + Delta-G solvation = -31046.220345 eV Core-core repulsion = 27081.508689 eV Total energy + Delta-G solvation = -3964.711657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.55071 -40.19239 -39.22229 -37.24633 -36.12913 -35.54474 -33.48343 -31.74831 -31.31331 -30.87796 -30.16190 -28.52934 -25.99207 -25.36315 -25.12261 -23.53753 -23.13327 -22.29908 -21.21928 -20.73140 -19.91875 -19.21165 -18.56580 -17.65651 -17.20908 -17.08736 -16.69213 -16.34846 -15.92198 -15.68247 -15.52832 -15.37508 -15.07642 -14.91703 -14.86449 -14.54823 -14.43752 -14.19175 -13.91772 -13.73041 -13.55894 -13.27190 -13.16647 -13.06300 -12.98927 -12.72248 -12.58232 -12.23515 -12.19356 -12.07744 -11.99632 -11.86292 -11.68438 -11.65865 -11.51533 -11.48700 -11.44901 -11.26366 -11.06426 -10.91927 -10.74554 -10.44866 -9.71496 -9.01516 -8.29152 -5.22592 1.46414 1.61180 1.64336 1.71294 1.82204 2.73123 2.75427 3.42143 3.48120 3.69573 3.72655 3.76847 3.80147 3.91179 3.95067 4.02265 4.06668 4.14080 4.18791 4.24785 4.25975 4.30447 4.33233 4.35123 4.37307 4.51154 4.54870 4.57014 4.59125 4.66764 4.74372 4.79151 4.89729 4.93574 4.95634 5.01807 5.08703 5.11214 5.13417 5.15215 5.21597 5.21705 5.22853 5.30209 5.31324 5.37854 5.41793 5.50143 5.56565 5.71101 6.11265 6.35493 6.57430 7.04504 7.17245 8.08490 8.21075 9.22196 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013785 B = 0.002595 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.736437 B =10788.461854 C =11934.586080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.086 0.914 5 C 0.126 3.874 6 N -0.600 5.600 7 C 0.510 3.490 8 O -0.574 6.574 9 C 0.051 3.949 10 O -0.387 6.387 11 C 0.082 3.918 12 C -0.140 4.140 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.117 4.117 17 C 0.118 3.882 18 C -0.142 4.142 19 C 0.177 3.823 20 H 0.045 0.955 21 N -0.736 5.736 22 C -0.312 4.312 23 H 0.067 0.933 24 C -0.106 4.106 25 N -0.981 5.981 26 Si 1.126 2.874 27 H -0.271 1.271 28 H -0.296 1.296 29 H -0.299 1.299 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.052 0.948 51 H 0.109 0.891 52 H 0.079 0.921 53 H 0.069 0.931 54 H 0.359 0.641 55 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 21.656 7.117 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.104 0.896 5 C 0.003 3.997 6 N -0.333 5.333 7 C 0.299 3.701 8 O -0.453 6.453 9 C -0.028 4.028 10 O -0.307 6.307 11 C 0.025 3.975 12 C -0.178 4.178 13 C -0.151 4.151 14 C -0.160 4.160 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.004 4.004 18 C -0.182 4.182 19 C 0.068 3.932 20 H 0.063 0.937 21 N -0.379 5.379 22 C -0.444 4.444 23 H 0.085 0.915 24 C -0.297 4.297 25 N -0.630 5.630 26 Si 0.953 3.047 27 H -0.196 1.196 28 H -0.223 1.223 29 H -0.227 1.227 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.127 0.873 52 H 0.097 0.903 53 H 0.088 0.912 54 H 0.192 0.808 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.156 20.715 6.437 22.297 hybrid contribution -1.120 0.228 0.244 1.169 sum -6.276 20.944 6.681 22.862 Atomic orbital electron populations 1.21790 0.94647 1.02031 1.01904 1.21335 0.96164 0.95182 1.01607 1.21679 0.95907 0.96423 0.97221 0.89590 1.21482 0.98686 0.81944 0.97548 1.48116 1.08992 1.06014 1.70225 1.20865 0.86617 0.86771 0.75864 1.90660 1.16654 1.87013 1.51006 1.22319 0.91082 0.85487 1.03929 1.88017 1.33689 1.15828 1.93129 1.22418 0.98317 0.80425 0.96299 1.22032 1.01901 0.97434 0.96416 1.21496 0.99730 0.93433 1.00471 1.21593 1.00240 0.99465 0.94698 1.21499 1.01960 0.93679 0.97793 1.21603 0.99444 0.95649 0.98773 1.21737 0.78152 1.02004 0.98521 1.22384 1.01602 0.97487 0.96763 1.20383 0.90784 0.91617 0.90382 0.93681 1.42595 1.18580 1.65540 1.11166 1.20352 0.95336 1.29585 0.99087 0.91528 1.26899 1.08436 1.01645 0.92688 1.70940 1.14650 1.50007 1.27360 0.82599 0.71541 0.75059 0.75463 1.19601 1.22288 1.22674 0.91737 0.93300 0.92024 0.94036 0.91872 0.93607 0.89809 0.87681 0.88428 0.90582 0.92374 0.91500 0.91001 0.90830 0.90416 0.92294 0.90999 0.90605 0.92008 0.92281 0.92951 0.87316 0.90279 0.91223 0.80811 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.67 71.98 0.70 -3.21 16 2 C -0.10 -3.35 5.19 30.60 0.16 -3.19 16 3 C -0.09 -2.94 2.14 -10.71 -0.02 -2.96 16 4 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 5 C 0.13 4.30 5.03 86.37 0.43 4.74 16 6 N -0.60 -18.77 2.97 -818.91 -2.43 -21.21 16 7 C 0.51 16.37 7.78 87.66 0.68 17.05 16 8 O -0.57 -23.23 15.92 16.03 0.26 -22.98 16 9 C 0.05 1.20 4.57 71.24 0.33 1.52 16 10 O -0.39 -10.31 9.52 -129.94 -1.24 -11.55 16 11 C 0.08 1.53 2.61 30.60 0.08 1.61 16 12 C -0.14 -2.22 5.54 30.59 0.17 -2.05 16 13 C -0.11 -1.29 5.92 30.59 0.18 -1.11 16 14 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 15 C -0.11 -1.34 5.92 30.59 0.18 -1.16 16 16 C -0.12 -2.04 5.57 30.60 0.17 -1.87 16 17 C 0.12 3.39 6.08 86.36 0.53 3.91 16 18 C -0.14 -4.22 5.78 30.67 0.18 -4.04 16 19 C 0.18 6.35 2.53 45.02 0.11 6.46 16 20 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 21 N -0.74 -33.58 3.72 -322.81 -1.20 -34.78 16 22 C -0.31 -16.23 9.93 84.03 0.83 -15.39 16 23 H 0.07 3.39 7.83 -2.91 -0.02 3.37 16 24 C -0.11 -5.87 5.50 84.86 0.47 -5.40 16 25 N -0.98 -59.75 13.70 21.65 0.30 -59.45 16 26 Si 1.13 50.78 29.92 68.60 2.05 52.83 16 27 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 1.35 6.70 -2.39 -0.02 1.33 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.58 7.70 -2.38 -0.02 1.56 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.78 6.64 -2.39 -0.02 1.76 16 36 H 0.08 2.94 5.73 -2.39 -0.01 2.93 16 37 H 0.11 1.86 7.42 -2.39 -0.02 1.84 16 38 H 0.10 1.90 7.89 -2.39 -0.02 1.89 16 39 H 0.08 1.17 7.79 -2.39 -0.02 1.15 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.00 7.87 -2.39 -0.02 0.98 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.05 1.87 7.74 -2.39 -0.02 1.85 16 51 H 0.11 2.24 5.93 -2.39 -0.01 2.23 16 52 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 54 H 0.36 17.68 4.77 -92.71 -0.44 17.23 16 55 H 0.24 14.79 6.78 -92.70 -0.63 14.16 16 Total: -1.00 -69.72 413.73 3.63 -66.09 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: 0.55 Total: 37.28 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.35 Total: -6.23 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.34 Total: -115.44 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.98 Total: -34.53 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -69.72 3.63 -66.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037874918.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.774 kcal (2) G-P(sol) polarization free energy of solvation -69.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds