Wall clock time and date at job start Tue Mar 31 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46744 * 2 1 4 4 H 1.09002 * 109.49908 * 55.00098 * 3 2 1 5 5 C 1.53188 * 109.49955 * 294.93509 * 3 2 1 6 6 N 1.46925 * 108.77700 * 185.38400 * 5 3 2 7 7 C 1.34784 * 120.62853 * 233.58870 * 6 5 3 8 8 O 1.21279 * 119.99875 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99582 * 180.02562 * 7 6 5 10 10 C 1.53006 * 109.46998 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47111 * 179.97438 * 10 9 7 12 12 C 1.53177 * 109.54397 * 294.55518 * 11 10 9 13 13 C 1.53092 * 109.16258 * 183.15283 * 12 11 10 14 14 O 1.42908 * 109.41571 * 57.60976 * 13 12 11 15 15 C 1.42904 * 114.09633 * 298.84502 * 14 13 12 16 16 C 1.53091 * 109.41518 * 61.15557 * 15 14 13 17 17 C 1.46920 * 118.73823 * 53.60843 * 6 5 3 18 18 C 1.53193 * 108.77550 * 306.39057 * 17 6 5 19 19 C 1.53040 * 109.31153 * 54.63854 * 18 17 6 20 20 H 1.09004 * 109.46170 * 58.65203 * 19 18 17 21 21 N 1.46502 * 109.45822 * 178.61249 * 19 18 17 22 22 C 1.36935 * 120.00003 * 275.06158 * 21 19 18 23 23 H 1.08007 * 119.99949 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99988 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99900 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00132 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47028 * 0.02562 * 26 24 22 28 28 H 1.48493 * 109.47061 * 120.00527 * 26 24 22 29 29 H 1.48505 * 109.47123 * 240.00662 * 26 24 22 30 30 H 1.09000 * 109.47187 * 299.99868 * 1 2 3 31 31 H 1.08996 * 109.47358 * 60.00351 * 1 2 3 32 32 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46934 * 240.00620 * 2 1 3 34 34 H 1.08996 * 109.46913 * 119.99945 * 2 1 3 35 35 H 1.09000 * 109.58701 * 305.17103 * 5 3 2 36 36 H 1.09005 * 109.58454 * 65.59138 * 5 3 2 37 37 H 1.09001 * 109.47077 * 299.99541 * 9 7 6 38 38 H 1.08999 * 109.47395 * 60.00261 * 9 7 6 39 39 H 1.09007 * 109.46993 * 300.00268 * 10 9 7 40 40 H 1.09004 * 109.46672 * 59.99544 * 10 9 7 41 41 H 1.08997 * 109.54752 * 54.82504 * 11 10 9 42 42 H 1.09001 * 109.52703 * 303.05963 * 12 11 10 43 43 H 1.09000 * 109.52012 * 63.24971 * 12 11 10 44 44 H 1.08997 * 109.48370 * 297.62844 * 13 12 11 45 45 H 1.09001 * 109.49265 * 177.59754 * 13 12 11 46 46 H 1.09003 * 109.47749 * 301.16948 * 15 14 13 47 47 H 1.09003 * 109.47600 * 181.14015 * 15 14 13 48 48 H 1.09005 * 109.51722 * 182.48500 * 16 15 14 49 49 H 1.09001 * 109.52414 * 62.29991 * 16 15 14 50 50 H 1.09004 * 109.58885 * 66.17987 * 17 6 5 51 51 H 1.09000 * 109.58663 * 186.46129 * 17 6 5 52 52 H 1.09005 * 109.49580 * 174.58602 * 18 17 6 53 53 H 1.08995 * 109.49630 * 294.68274 * 18 17 6 54 54 H 0.97005 * 119.99748 * 95.07143 * 21 19 18 55 55 H 0.96997 * 119.99945 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6055 1.9820 0.8417 5 6 1.6364 2.1276 -1.3094 6 7 2.2422 3.4655 -1.3495 7 6 1.4819 4.5574 -1.5651 8 8 0.2859 4.4408 -1.7287 9 6 2.1183 5.9228 -1.6040 10 6 1.0426 6.9797 -1.8627 11 6 1.6886 8.3660 -1.9015 12 6 2.2528 8.7073 -0.5190 13 6 2.8266 10.1264 -0.5467 14 8 1.8042 11.0446 -0.9389 15 6 1.2721 10.8031 -2.2431 16 6 0.6360 9.4112 -2.2835 17 6 3.6925 3.5905 -1.1505 18 6 4.0730 2.8891 0.1572 19 6 3.5653 1.4458 0.1237 20 1 4.0000 0.9276 -0.7312 21 7 3.9563 0.7621 1.3590 22 6 5.1949 0.1869 1.4606 23 1 5.8836 0.2375 0.6302 24 6 5.5655 -0.4604 2.6313 25 7 4.7264 -0.5217 3.6434 26 14 7.2553 -1.2445 2.7702 27 1 8.0028 -1.0372 1.5039 28 1 8.0003 -0.6194 3.8923 29 1 7.1062 -2.7000 3.0248 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9935 1.5393 -2.1547 36 1 0.5509 2.2163 -1.3559 37 1 2.6041 6.1246 -0.6493 38 1 2.8591 5.9559 -2.4028 39 1 0.5571 6.7777 -2.8176 40 1 0.3014 6.9467 -1.0641 41 1 2.4930 8.3730 -2.6370 42 1 1.4568 8.6507 0.2235 43 1 3.0420 8.0003 -0.2630 44 1 3.6493 10.1720 -1.2602 45 1 3.1912 10.3907 0.4459 46 1 2.0745 10.8576 -2.9788 47 1 0.5168 11.5549 -2.4724 48 1 0.2687 9.2077 -3.2894 49 1 -0.1928 9.3688 -1.5767 50 1 4.2173 3.1215 -1.9829 51 1 3.9641 4.6446 -1.0947 52 1 5.1574 2.8908 0.2687 53 1 3.6195 3.4149 0.9973 54 1 3.3378 0.7168 2.1049 55 1 4.9852 -0.9744 4.4613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037934186.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:15 Heat of formation + Delta-G solvation = -121.199052 kcal Electronic energy + Delta-G solvation = -30592.889562 eV Core-core repulsion = 26627.816291 eV Total energy + Delta-G solvation = -3965.073271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.38236 -40.31163 -39.16093 -36.38380 -36.15345 -35.31914 -33.43622 -32.33067 -31.84430 -31.04338 -30.01571 -27.41298 -26.17094 -25.08319 -24.49331 -24.30696 -22.87778 -22.18251 -21.13093 -20.89524 -19.92480 -19.03249 -18.17049 -17.12435 -16.98375 -16.87786 -16.70645 -16.64873 -15.79766 -15.64933 -15.52205 -15.43329 -15.14317 -14.92572 -14.73028 -14.52524 -14.38369 -14.20756 -13.78857 -13.53981 -13.29777 -13.14639 -13.08192 -13.00764 -12.87943 -12.75432 -12.63175 -12.54340 -12.23766 -12.12267 -12.11105 -12.02749 -11.83659 -11.72171 -11.58232 -11.52327 -11.22527 -11.13518 -11.08650 -10.91686 -10.69623 -10.39402 -9.62311 -8.95128 -7.90474 -5.17863 1.48619 1.49163 1.58512 1.65901 2.06031 2.58341 3.03299 3.42840 3.49731 3.72578 3.77386 3.79075 3.83493 3.98269 4.06515 4.08345 4.12472 4.24188 4.27109 4.30152 4.35585 4.40802 4.44765 4.47085 4.53530 4.62232 4.63912 4.68862 4.77044 4.81397 4.83002 4.85142 4.85618 4.91068 4.92423 4.97133 5.01685 5.06745 5.09554 5.15901 5.20492 5.22411 5.29979 5.33241 5.38979 5.47475 5.51891 5.53247 5.59417 5.68360 6.30948 6.32874 6.47910 7.20395 7.37456 8.13830 8.36833 9.33306 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013500 B = 0.002410 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.508217 B =11614.536922 C =13101.661088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.092 4.092 4 H 0.048 0.952 5 C 0.125 3.875 6 N -0.610 5.610 7 C 0.507 3.493 8 O -0.589 6.589 9 C -0.134 4.134 10 C -0.090 4.090 11 C -0.083 4.083 12 C -0.154 4.154 13 C 0.056 3.944 14 O -0.410 6.410 15 C 0.057 3.943 16 C -0.151 4.151 17 C 0.114 3.886 18 C -0.143 4.143 19 C 0.178 3.822 20 H 0.047 0.953 21 N -0.732 5.732 22 C -0.226 4.226 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.299 1.299 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.113 0.887 52 H 0.068 0.932 53 H 0.044 0.956 54 H 0.370 0.630 55 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 19.354 -16.022 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.342 5.342 7 C 0.298 3.702 8 O -0.470 6.470 9 C -0.174 4.174 10 C -0.128 4.128 11 C -0.102 4.102 12 C -0.192 4.192 13 C -0.020 4.020 14 O -0.330 6.330 15 C -0.019 4.019 16 C -0.188 4.188 17 C -0.008 4.008 18 C -0.184 4.184 19 C 0.070 3.930 20 H 0.065 0.935 21 N -0.371 5.371 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.187 1.187 28 H -0.225 1.225 29 H -0.227 1.227 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.117 0.883 48 H 0.103 0.897 49 H 0.076 0.924 50 H 0.103 0.897 51 H 0.131 0.869 52 H 0.087 0.913 53 H 0.063 0.937 54 H 0.201 0.799 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.939 19.379 -16.066 25.653 hybrid contribution 0.561 -1.218 1.084 1.724 sum -4.379 18.161 -14.983 23.948 Atomic orbital electron populations 1.21772 0.95020 1.01867 1.01596 1.21361 0.95960 0.95386 1.01882 1.21617 0.95959 0.96300 0.97320 0.93300 1.21577 0.99153 0.82441 0.96665 1.48302 1.09176 1.06480 1.70224 1.21406 0.86501 0.87456 0.74868 1.90651 1.16853 1.87359 1.52169 1.21811 1.00264 0.89340 1.05948 1.21275 0.96754 0.92747 1.01993 1.21195 0.98173 0.93322 0.97490 1.22321 1.01642 0.97796 0.97394 1.22711 0.89629 0.88333 1.01320 1.87904 1.55829 1.54499 1.34755 1.22706 0.98287 0.96683 0.84207 1.22233 0.98592 0.95256 1.02765 1.21925 0.78586 1.03023 0.97287 1.22475 1.01362 0.97500 0.97083 1.20429 0.92193 0.91554 0.88861 0.93497 1.42611 1.15446 1.65048 1.13948 1.19623 0.92464 1.25458 0.98236 0.90354 1.25486 1.01555 1.03362 0.96637 1.69828 1.37031 1.50227 1.05203 0.85160 0.80298 0.77279 0.77583 1.18742 1.22532 1.22691 0.93735 0.91844 0.92095 0.91708 0.93527 0.90362 0.89977 0.87423 0.86062 0.91912 0.93421 0.89166 0.92545 0.89294 0.91793 0.88554 0.91915 0.88285 0.89732 0.92437 0.89682 0.86919 0.91311 0.93683 0.79888 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.67 71.98 0.70 -3.32 16 2 C -0.11 -3.51 5.31 30.60 0.16 -3.35 16 3 C -0.09 -2.97 1.92 -10.72 -0.02 -2.99 16 4 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.12 3.43 5.32 86.36 0.46 3.89 16 6 N -0.61 -15.09 2.97 -818.91 -2.43 -17.52 16 7 C 0.51 12.82 7.70 87.65 0.67 13.49 16 8 O -0.59 -19.55 15.40 -3.03 -0.05 -19.59 16 9 C -0.13 -2.16 3.81 29.85 0.11 -2.04 16 10 C -0.09 -1.53 3.98 30.59 0.12 -1.40 16 11 C -0.08 -1.06 2.27 -10.68 -0.02 -1.08 16 12 C -0.15 -2.05 5.10 30.68 0.16 -1.90 16 13 C 0.06 0.75 6.84 72.01 0.49 1.24 16 14 O -0.41 -7.28 10.77 -148.98 -1.60 -8.88 16 15 C 0.06 0.73 6.84 72.01 0.49 1.22 16 16 C -0.15 -1.97 5.42 30.68 0.17 -1.81 16 17 C 0.11 2.38 6.34 86.36 0.55 2.93 16 18 C -0.14 -4.33 5.66 30.67 0.17 -4.16 16 19 C 0.18 6.43 2.19 45.02 0.10 6.53 16 20 H 0.05 1.71 8.08 -2.38 -0.02 1.69 16 21 N -0.73 -34.87 4.33 -322.80 -1.40 -36.27 16 22 C -0.23 -11.87 9.93 84.03 0.83 -11.03 16 23 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 24 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 25 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 26 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 27 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.58 6.70 -2.39 -0.02 1.56 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.87 7.22 -2.39 -0.02 1.85 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.43 5.72 -2.38 -0.01 2.42 16 37 H 0.11 1.50 6.21 -2.39 -0.01 1.49 16 38 H 0.12 1.27 7.94 -2.39 -0.02 1.25 16 39 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 40 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 0.96 6.75 -2.39 -0.02 0.94 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 51 H 0.11 1.61 5.93 -2.39 -0.01 1.59 16 52 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 53 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 54 H 0.37 19.61 7.51 -92.70 -0.70 18.91 16 55 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -69.07 415.90 2.59 -66.48 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.15 Total: 34.78 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 5.61 Total: -7.69 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -3.55 Total: -112.22 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.65 Total: -28.47 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.07 2.59 -66.48 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037934186.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.721 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds