Wall clock time and date at job start Wed Apr 1 2020 00:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47385 * 2 1 4 4 H 1.09009 * 109.46857 * 303.85505 * 3 2 1 5 5 O 1.42900 * 109.46999 * 63.85096 * 3 2 1 6 6 C 1.42904 * 114.00268 * 258.00329 * 5 3 2 7 7 C 1.50694 * 109.47196 * 183.85225 * 3 2 1 8 8 O 1.21284 * 120.00182 * 254.96521 * 7 3 2 9 9 N 1.34783 * 120.00058 * 74.97177 * 7 3 2 10 10 C 1.46925 * 120.62792 * 354.97387 * 9 7 3 11 11 C 1.53195 * 108.77102 * 233.63220 * 10 9 7 12 12 C 1.53037 * 109.31546 * 305.36542 * 11 10 9 13 13 C 1.53354 * 109.60745 * 61.37265 * 12 11 10 14 14 H 1.09007 * 109.46797 * 58.55138 * 13 12 11 15 15 C 1.52993 * 109.68461 * 178.74708 * 13 12 11 16 16 C 1.53036 * 109.46178 * 299.78449 * 15 13 12 17 17 C 1.53197 * 109.31479 * 178.60205 * 16 15 13 18 18 N 1.46931 * 108.76459 * 54.65469 * 17 16 15 19 19 C 1.36929 * 120.63407 * 126.36494 * 18 17 16 20 20 H 1.08001 * 120.00674 * 207.81191 * 19 18 17 21 21 C 1.38812 * 119.99964 * 27.80884 * 19 18 17 22 22 N 1.31621 * 119.99817 * 21.97987 * 21 19 18 23 23 Si 1.86796 * 120.00342 * 201.97925 * 21 19 18 24 24 H 1.48499 * 109.47201 * 84.99113 * 23 21 19 25 25 H 1.48504 * 109.47572 * 204.99236 * 23 21 19 26 26 H 1.48502 * 109.47162 * 324.99438 * 23 21 19 27 27 C 1.46928 * 118.73778 * 306.38303 * 18 17 16 28 28 C 1.53044 * 109.46128 * 179.72828 * 15 13 12 29 29 C 1.46925 * 120.62913 * 174.99692 * 9 7 3 30 30 H 1.09002 * 109.47074 * 296.16961 * 1 2 3 31 31 H 1.08997 * 109.47202 * 56.16404 * 1 2 3 32 32 H 1.09001 * 109.47250 * 176.16732 * 1 2 3 33 33 H 1.09002 * 109.47281 * 240.00298 * 2 1 3 34 34 H 1.09001 * 109.47634 * 120.00186 * 2 1 3 35 35 H 1.08996 * 109.47309 * 181.22843 * 6 5 3 36 36 H 1.08996 * 109.46811 * 301.22902 * 6 5 3 37 37 H 1.09000 * 109.46885 * 61.22248 * 6 5 3 38 38 H 1.09001 * 109.58822 * 353.41647 * 10 9 7 39 39 H 1.09000 * 109.58500 * 113.70477 * 10 9 7 40 40 H 1.08998 * 109.50125 * 65.32146 * 11 10 9 41 41 H 1.09000 * 109.49462 * 185.41278 * 11 10 9 42 42 H 1.08999 * 109.46359 * 181.38807 * 12 11 10 43 43 H 1.09010 * 109.46105 * 301.36221 * 12 11 10 44 44 H 1.09000 * 109.45989 * 59.75701 * 15 13 12 45 45 H 1.09007 * 109.49761 * 298.56290 * 16 15 13 46 46 H 1.08993 * 109.50043 * 58.66419 * 16 15 13 47 47 H 1.09002 * 109.59803 * 294.86565 * 17 16 15 48 48 H 1.09003 * 109.70538 * 174.50406 * 17 16 15 49 49 H 0.97001 * 120.00172 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.58579 * 293.82772 * 27 18 17 51 51 H 1.09000 * 109.59095 * 173.39575 * 27 18 17 52 52 H 1.09000 * 109.49697 * 301.34213 * 28 15 13 53 53 H 1.09004 * 109.49655 * 61.40284 * 28 15 13 54 54 H 1.08997 * 109.58744 * 246.15334 * 29 9 7 55 55 H 1.09002 * 109.58791 * 6.44009 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6214 1.9759 -0.8535 5 8 1.6390 2.0895 1.2094 6 6 0.5181 2.9628 1.0574 7 6 3.5440 1.4435 -0.0955 8 8 4.2137 1.6936 0.8843 9 7 4.1449 1.1667 -1.2697 10 6 3.3533 0.7549 -2.4369 11 6 3.9175 -0.5638 -2.9750 12 6 5.4125 -0.3973 -3.2565 13 6 6.1462 -0.0535 -1.9545 14 1 5.9797 -0.8451 -1.2238 15 6 7.6453 0.0826 -2.2281 16 6 8.1858 -1.2401 -2.7761 17 6 9.6794 -1.0894 -3.0817 18 7 10.3637 -0.6131 -1.8719 19 6 11.4434 -1.2888 -1.3692 20 1 11.6643 -1.2445 -0.3129 21 6 12.2540 -2.0309 -2.2172 22 7 12.2775 -1.7637 -3.5058 23 14 13.3116 -3.4086 -1.5296 24 1 12.5068 -4.6535 -1.4414 25 1 14.4749 -3.6336 -2.4248 26 1 13.7938 -3.0340 -0.1759 27 6 9.8672 0.6018 -1.2114 28 6 8.3714 0.4322 -0.9271 29 6 5.6041 1.2703 -1.4066 30 1 -0.3633 0.4532 0.9223 31 1 -0.3633 0.5722 -0.8536 32 1 -0.3634 -1.0254 -0.0687 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.2900 3.4312 2.0148 36 1 0.7545 3.7329 0.3233 37 1 -0.3451 2.3902 0.7181 38 1 2.3134 0.6141 -2.1420 39 1 3.4136 1.5225 -3.2085 40 1 3.7721 -1.3507 -2.2349 41 1 3.4012 -0.8310 -3.8970 42 1 5.8113 -1.3268 -3.6627 43 1 5.5589 0.4067 -3.9780 44 1 7.8105 0.8734 -2.9599 45 1 8.0435 -2.0264 -2.0346 46 1 7.6521 -1.5005 -3.6901 47 1 9.8168 -0.3681 -3.8872 48 1 10.0926 -2.0531 -3.3798 49 1 12.8442 -2.2820 -4.0983 50 1 10.0198 1.4611 -1.8645 51 1 10.4024 0.7530 -0.2740 52 1 7.9698 1.3623 -0.5249 53 1 8.2269 -0.3696 -0.2030 54 1 5.8500 2.0788 -2.0951 55 1 6.0491 1.4721 -0.4322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047232993.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:15 Heat of formation + Delta-G solvation = -93.644961 kcal Electronic energy + Delta-G solvation = -31363.536877 eV Core-core repulsion = 27399.658441 eV Total energy + Delta-G solvation = -3963.878436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.65571 -40.04082 -38.80194 -37.96777 -35.78625 -34.40425 -33.61913 -32.76497 -31.69639 -30.67371 -29.31467 -27.26207 -26.85619 -25.89589 -24.61323 -23.68889 -22.83278 -22.69327 -21.39004 -20.71315 -20.06607 -18.73897 -18.60195 -17.74000 -16.92296 -16.84696 -16.60492 -15.95308 -15.83762 -15.62478 -15.41373 -15.34614 -15.20322 -14.84862 -14.73642 -14.49062 -14.24149 -14.12773 -13.94385 -13.78163 -13.55639 -13.41535 -13.04623 -12.97252 -12.93921 -12.70075 -12.59915 -12.53108 -12.29417 -12.18258 -12.01413 -11.92939 -11.89532 -11.77693 -11.70378 -11.53865 -11.41120 -11.09477 -10.91896 -10.78936 -10.53711 -10.35901 -9.63668 -8.69881 -7.90508 -5.32229 1.43887 1.45739 1.49498 1.54192 1.76333 2.49735 2.89533 3.21924 3.40684 3.67383 3.71896 3.77933 3.79558 3.87724 3.92049 4.09281 4.18454 4.20293 4.28665 4.36900 4.40877 4.42663 4.51079 4.53906 4.57396 4.59654 4.64343 4.71107 4.76463 4.79447 4.83133 4.85491 4.90770 4.92354 5.01518 5.04161 5.07893 5.10938 5.15954 5.17433 5.28463 5.33028 5.37682 5.39779 5.44806 5.48043 5.53590 5.56134 5.66110 5.78118 6.06603 6.36957 6.40250 7.11917 7.13441 7.85767 8.38021 9.15705 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.002368 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.299249 B =11820.559575 C =12199.800358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.079 3.921 4 H 0.118 0.882 5 O -0.394 6.394 6 C 0.017 3.983 7 C 0.499 3.501 8 O -0.580 6.580 9 N -0.605 5.605 10 C 0.093 3.907 11 C -0.129 4.129 12 C -0.117 4.117 13 C -0.081 4.081 14 H 0.053 0.947 15 C -0.061 4.061 16 C -0.117 4.117 17 C 0.177 3.823 18 N -0.611 5.611 19 C -0.268 4.268 20 H 0.059 0.941 21 C -0.047 4.047 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.272 1.272 27 C 0.142 3.858 28 C -0.118 4.118 29 C 0.117 3.883 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.078 0.922 47 H -0.001 1.001 48 H 0.045 0.955 49 H 0.251 0.749 50 H 0.015 0.985 51 H 0.044 0.956 52 H 0.070 0.930 53 H 0.042 0.958 54 H 0.080 0.920 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.869 6.155 -1.307 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.018 3.982 4 H 0.136 0.864 5 O -0.312 6.312 6 C -0.078 4.078 7 C 0.287 3.713 8 O -0.459 6.459 9 N -0.338 5.338 10 C -0.028 4.028 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.100 4.100 14 H 0.072 0.928 15 C -0.080 4.080 16 C -0.156 4.156 17 C 0.051 3.949 18 N -0.335 5.335 19 C -0.398 4.398 20 H 0.076 0.924 21 C -0.243 4.243 22 N -0.575 5.575 23 Si 0.790 3.210 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.197 1.197 27 C 0.016 3.984 28 C -0.157 4.157 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.017 0.983 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.033 0.967 51 H 0.063 0.937 52 H 0.089 0.911 53 H 0.061 0.939 54 H 0.098 0.902 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.341 6.219 -0.717 30.980 hybrid contribution 1.438 -0.634 0.323 1.605 sum -28.903 5.585 -0.395 29.440 Atomic orbital electron populations 1.21815 0.92657 1.03357 1.02725 1.22056 0.98771 0.93366 1.03498 1.22152 0.89362 0.96697 0.89943 0.86433 1.88018 1.50573 1.61677 1.30923 1.23225 0.87996 0.92958 1.03664 1.21398 0.91517 0.76027 0.82309 1.90692 1.67302 1.50250 1.37627 1.48223 1.07589 1.66885 1.11132 1.22268 0.95924 0.97462 0.87152 1.21920 0.95440 0.96745 1.02607 1.21693 0.95217 1.02636 0.95851 1.21446 0.93740 0.96533 0.98329 0.92825 1.20905 0.93197 0.97406 0.96506 1.22029 0.96326 0.96918 1.00330 1.20587 0.89947 0.97337 0.86991 1.44343 1.32308 1.26653 1.30159 1.19436 1.03863 1.24754 0.91741 0.92350 1.25720 0.99074 1.03434 0.96060 1.70226 1.42273 1.40692 1.04280 0.85364 0.77836 0.80007 0.77763 1.21045 1.21805 1.19713 1.21027 0.93753 0.88172 0.95432 1.21956 0.95667 1.00568 0.97496 1.21628 0.79446 0.97737 1.01688 0.92637 0.90404 0.91103 0.88429 0.92908 0.88891 0.92972 0.91189 0.87192 0.89022 0.92127 0.87583 0.91311 0.90682 0.91325 0.94041 0.90405 0.98327 0.93670 0.94000 0.96695 0.93745 0.91135 0.93889 0.90206 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.83 71.98 0.64 -0.54 16 2 C -0.14 -1.85 5.23 30.59 0.16 -1.69 16 3 C 0.08 1.36 1.84 29.85 0.05 1.41 16 4 H 0.12 1.15 6.88 -2.38 -0.02 1.13 16 5 O -0.39 -8.52 9.65 -130.38 -1.26 -9.78 16 6 C 0.02 0.20 10.40 113.37 1.18 1.38 16 7 C 0.50 12.77 7.01 87.65 0.61 13.38 16 8 O -0.58 -21.51 15.98 15.55 0.25 -21.26 16 9 N -0.60 -12.40 2.97 -818.90 -2.43 -14.83 16 10 C 0.09 1.02 5.61 86.36 0.48 1.50 16 11 C -0.13 -1.54 6.08 30.67 0.19 -1.36 16 12 C -0.12 -2.11 4.87 30.73 0.15 -1.96 16 13 C -0.08 -2.02 1.93 -10.61 -0.02 -2.04 16 14 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 15 C -0.06 -1.93 1.75 -10.77 -0.02 -1.95 16 16 C -0.12 -4.31 5.05 30.67 0.16 -4.16 16 17 C 0.18 8.65 5.35 86.36 0.46 9.12 16 18 N -0.61 -32.18 2.99 -699.07 -2.09 -34.27 16 19 C -0.27 -15.50 9.55 84.03 0.80 -14.69 16 20 H 0.06 3.36 7.92 -2.91 -0.02 3.34 16 21 C -0.05 -2.71 4.78 84.86 0.41 -2.30 16 22 N -0.93 -56.23 11.51 21.65 0.25 -55.98 16 23 Si 0.96 46.29 29.61 68.60 2.03 48.32 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 27 C 0.14 6.30 6.52 86.36 0.56 6.86 16 28 C -0.12 -4.28 5.05 30.67 0.15 -4.13 16 29 C 0.12 2.89 5.19 86.36 0.45 3.34 16 30 H 0.05 0.53 6.60 -2.39 -0.02 0.52 16 31 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 0.96 5.98 -2.39 -0.01 0.95 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.05 0.50 8.10 -2.39 -0.02 0.48 16 37 H 0.07 0.49 6.08 -2.39 -0.01 0.47 16 38 H 0.11 0.66 4.36 -2.39 -0.01 0.65 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 1.34 6.36 -2.39 -0.02 1.33 16 43 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.08 2.43 6.35 -2.39 -0.02 2.41 16 47 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.04 2.50 6.20 -2.39 -0.01 2.48 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.04 1.99 7.93 -2.39 -0.02 1.97 16 52 H 0.07 2.29 6.49 -2.39 -0.02 2.28 16 53 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 54 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 55 H 0.07 2.06 5.57 -2.39 -0.01 2.04 16 Total: -1.00 -78.26 404.33 4.01 -74.25 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.85 Total: 11.37 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.42 Total: 2.19 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -4.27 Total: -105.08 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.01 Total: -31.04 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.26 4.01 -74.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047232993.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.395 kcal (2) G-P(sol) polarization free energy of solvation -78.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds