Wall clock time and date at job start Tue Mar 31 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46969 * 2 1 4 4 C 1.52998 * 109.47390 * 120.00030 * 2 1 3 5 5 H 1.08995 * 109.47167 * 300.00421 * 4 2 1 6 6 C 1.53005 * 109.47089 * 60.00043 * 4 2 1 7 7 C 1.52996 * 109.47149 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46817 * 299.99477 * 7 6 4 9 9 H 1.08995 * 109.47536 * 300.00638 * 8 7 6 10 10 C 1.50702 * 109.46973 * 179.97438 * 8 7 6 11 11 O 1.21283 * 120.00274 * 240.00490 * 10 8 7 12 12 N 1.34776 * 119.99877 * 60.00748 * 10 8 7 13 13 C 1.46500 * 120.00303 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47160 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.70849 * 299.94350 * 14 13 12 16 16 C 1.53299 * 109.68038 * 179.41028 * 14 13 12 17 17 O 1.42967 * 109.22149 * 187.97171 * 16 14 13 18 18 C 1.42955 * 114.16592 * 62.57849 * 17 16 14 19 19 C 1.53294 * 109.22624 * 297.41976 * 18 17 16 20 20 N 1.47150 * 108.38380 * 52.30253 * 19 18 17 21 21 C 1.36933 * 120.98213 * 129.19497 * 20 19 18 22 22 H 1.08002 * 120.00133 * 211.62122 * 21 20 19 23 23 C 1.38810 * 120.00151 * 31.62063 * 21 20 19 24 24 N 1.31620 * 120.00133 * 9.83453 * 23 21 20 25 25 Si 1.86800 * 120.00169 * 189.83426 * 23 21 20 26 26 H 1.48497 * 109.47081 * 60.00223 * 25 23 21 27 27 H 1.48505 * 109.47013 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47380 * 300.00049 * 25 23 21 29 29 C 1.53004 * 109.46680 * 60.00691 * 8 7 6 30 30 C 1.52996 * 109.46932 * 299.99239 * 29 8 7 31 31 H 1.08996 * 109.47770 * 299.99899 * 1 2 3 32 32 H 1.09003 * 109.47569 * 60.00404 * 1 2 3 33 33 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47130 * 240.00155 * 2 1 3 35 35 H 1.09006 * 109.46784 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.46786 * 299.99838 * 3 2 1 37 37 H 1.08995 * 109.46808 * 60.00057 * 3 2 1 38 38 H 1.09006 * 109.46784 * 300.00188 * 6 4 2 39 39 H 1.08995 * 109.46808 * 60.00157 * 6 4 2 40 40 H 1.09000 * 109.47358 * 180.02562 * 7 6 4 41 41 H 1.08999 * 109.47355 * 59.99640 * 7 6 4 42 42 H 0.97004 * 120.00101 * 359.97438 * 12 10 8 43 43 H 1.08999 * 109.47127 * 59.99485 * 13 12 10 44 44 H 1.08998 * 109.46731 * 299.99520 * 13 12 10 45 45 H 1.08995 * 109.51081 * 68.05150 * 16 14 13 46 46 H 1.08993 * 109.55245 * 307.91689 * 16 14 13 47 47 H 1.09002 * 109.51236 * 177.49323 * 18 17 16 48 48 H 1.09004 * 109.51504 * 57.34414 * 18 17 16 49 49 H 1.09004 * 109.67952 * 292.57695 * 19 18 17 50 50 H 1.08995 * 109.71457 * 172.04607 * 19 18 17 51 51 H 0.96996 * 120.00495 * 179.97438 * 24 23 21 52 52 H 1.08999 * 109.47657 * 59.99735 * 29 8 7 53 53 H 1.09006 * 109.46629 * 179.97438 * 29 8 7 54 54 H 1.09000 * 109.47358 * 179.97438 * 30 29 8 55 55 H 1.08995 * 109.47589 * 300.00239 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2492 7 6 2.0395 -2.8848 2.4987 8 6 3.5696 -2.8849 2.4992 9 1 3.9332 -3.3987 1.6094 10 6 4.0715 -3.5946 3.7302 11 8 4.7685 -3.0047 4.5285 12 7 3.7459 -4.8848 3.9441 13 6 4.2342 -5.5749 5.1405 14 6 3.7247 -7.0175 5.1408 15 1 2.6347 -7.0224 5.1416 16 6 4.2452 -7.7487 6.3836 17 8 3.9218 -9.1376 6.2826 18 6 4.5331 -9.8017 5.1740 19 6 4.0274 -9.1757 3.8693 20 7 4.2226 -7.7193 3.9471 21 6 4.8539 -7.0380 2.9409 22 1 5.4366 -6.1574 3.1679 23 6 4.7449 -7.4790 1.6293 24 7 3.8862 -8.4285 1.3234 25 14 5.8168 -6.7249 0.2982 26 1 7.2473 -6.9427 0.6321 27 1 5.5096 -7.3647 -1.0063 28 1 5.5453 -5.2676 0.2104 29 6 4.0795 -1.4423 2.4992 30 6 3.5700 -0.7213 1.2497 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 0.4400 -2.1638 1.2492 39 1 1.8934 -2.6775 0.3592 40 1 1.6766 -3.9127 2.4985 41 1 1.6759 -2.3709 3.3885 42 1 3.1882 -5.3565 3.3058 43 1 3.8710 -5.0607 6.0303 44 1 5.3242 -5.5750 5.1404 45 1 3.7777 -7.3299 7.2747 46 1 5.3267 -7.6306 6.4501 47 1 4.2728 -10.8599 5.1950 48 1 5.6158 -9.6910 5.2352 49 1 2.9679 -9.3979 3.7420 50 1 4.5903 -9.5771 3.0266 51 1 3.8098 -8.7364 0.4068 52 1 3.7159 -0.9284 3.3890 53 1 5.1696 -1.4424 2.5000 54 1 3.9329 0.3066 1.2500 55 1 3.9337 -1.2351 0.3600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051181772.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:19 Heat of formation + Delta-G solvation = -106.968473 kcal Electronic energy + Delta-G solvation = -31749.398922 eV Core-core repulsion = 27784.942735 eV Total energy + Delta-G solvation = -3964.456187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -41.29346 -40.17471 -39.31502 -36.96292 -35.78733 -35.29446 -33.30020 -32.22841 -31.75648 -30.65788 -28.98737 -27.95409 -27.05403 -25.25713 -24.63640 -23.41029 -23.13391 -21.69936 -21.38559 -20.62600 -20.53758 -18.78578 -17.81308 -17.54891 -17.34331 -16.67384 -16.35000 -16.26109 -16.00596 -15.61554 -15.37861 -15.24064 -15.08039 -14.97837 -14.72814 -14.50960 -14.36423 -14.09281 -14.08234 -13.48316 -13.29307 -13.12677 -13.00125 -12.87664 -12.73896 -12.68831 -12.54810 -12.43989 -12.22381 -12.14783 -12.02025 -12.00570 -11.97815 -11.85974 -11.56119 -11.31638 -11.27725 -11.13101 -10.79697 -10.73860 -10.57146 -10.45425 -9.82209 -8.61158 -7.86911 -5.38389 1.40586 1.45582 1.49393 1.75320 2.37314 2.47011 3.02815 3.29261 3.43993 3.63532 3.69663 3.77635 4.00494 4.03659 4.10795 4.15997 4.22101 4.32107 4.39164 4.42224 4.45455 4.47332 4.57241 4.58562 4.63018 4.63381 4.65444 4.69852 4.72138 4.75790 4.87443 4.88498 4.99857 5.05004 5.07018 5.11122 5.12079 5.15048 5.19674 5.25217 5.28472 5.30138 5.33690 5.40978 5.46825 5.58895 5.59924 5.65016 5.67697 5.69644 6.28994 6.37435 6.73670 7.11106 7.37026 7.76379 8.32874 9.17284 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.003310 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.002153 B = 8458.318803 C = 9310.992138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.077 4.077 5 H 0.072 0.928 6 C -0.111 4.111 7 C -0.102 4.102 8 C -0.103 4.103 9 H 0.085 0.915 10 C 0.509 3.491 11 O -0.594 6.594 12 N -0.695 5.695 13 C 0.141 3.859 14 C 0.127 3.873 15 H 0.037 0.963 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.046 3.954 19 C 0.149 3.851 20 N -0.605 5.605 21 C -0.243 4.243 22 H 0.066 0.934 23 C -0.028 4.028 24 N -0.925 5.925 25 Si 0.941 3.059 26 H -0.290 1.290 27 H -0.294 1.294 28 H -0.272 1.272 29 C -0.090 4.090 30 C -0.110 4.110 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.411 0.589 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.117 0.883 46 H 0.048 0.952 47 H 0.105 0.895 48 H 0.042 0.958 49 H 0.007 0.993 50 H 0.066 0.934 51 H 0.250 0.750 52 H 0.063 0.937 53 H 0.050 0.950 54 H 0.080 0.920 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 13.078 0.190 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.096 4.096 5 H 0.091 0.909 6 C -0.148 4.148 7 C -0.140 4.140 8 C -0.124 4.124 9 H 0.103 0.897 10 C 0.297 3.703 11 O -0.476 6.476 12 N -0.345 5.345 13 C 0.017 3.983 14 C 0.021 3.979 15 H 0.055 0.945 16 C -0.021 4.021 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.373 4.373 22 H 0.083 0.917 23 C -0.225 4.225 24 N -0.570 5.570 25 Si 0.770 3.230 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.198 1.198 29 C -0.128 4.128 30 C -0.148 4.148 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.248 0.752 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.135 0.865 46 H 0.066 0.934 47 H 0.123 0.877 48 H 0.060 0.940 49 H 0.025 0.975 50 H 0.085 0.915 51 H 0.060 0.940 52 H 0.082 0.918 53 H 0.069 0.931 54 H 0.098 0.902 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.595 13.304 0.721 14.451 hybrid contribution 0.769 -0.364 -1.446 1.678 sum -4.826 12.941 -0.725 13.830 Atomic orbital electron populations 1.21886 0.94789 1.01960 1.01907 1.21118 0.96121 0.96326 0.97350 1.21886 1.01203 0.95514 1.01905 1.21190 0.94521 0.95268 0.98590 0.90929 1.21631 1.01209 0.95286 0.96659 1.21461 0.91399 1.01230 0.99886 1.21345 0.98505 0.97430 0.95133 0.89697 1.21077 0.79643 0.81810 0.87813 1.90595 1.40658 1.67371 1.48968 1.46080 1.52211 1.11015 1.25224 1.21088 0.98368 0.91070 0.87794 1.21537 0.96500 0.90924 0.88956 0.94497 1.22989 0.99613 0.81654 0.97887 1.87804 1.72934 1.22416 1.48414 1.23223 0.96241 0.96877 0.86874 1.21244 0.97334 0.83817 0.95237 1.44261 1.67540 1.02639 1.18623 1.19203 1.22738 1.09812 0.85568 0.91665 1.25580 0.98701 0.99616 0.98599 1.70075 1.36800 1.31931 1.18203 0.85762 0.78991 0.78776 0.79473 1.21660 1.21967 1.19801 1.21258 0.99800 0.92597 0.99170 1.21650 0.95835 1.00682 0.96604 0.92497 0.92388 0.92475 0.91744 0.92469 0.92359 0.92532 0.90051 0.92324 0.91943 0.91270 0.75197 0.90431 0.93505 0.86493 0.93407 0.87747 0.93958 0.97480 0.91520 0.94032 0.91812 0.93138 0.90198 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.84 71.98 0.64 -1.51 16 2 C -0.09 -1.45 2.51 -10.80 -0.03 -1.48 16 3 C -0.15 -2.11 8.84 71.98 0.64 -1.47 16 4 C -0.08 -1.45 1.77 -10.79 -0.02 -1.47 16 5 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 6 C -0.11 -2.31 4.85 30.59 0.15 -2.16 16 7 C -0.10 -2.57 5.10 30.59 0.16 -2.42 16 8 C -0.10 -3.13 2.53 -11.54 -0.03 -3.16 16 9 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 10 C 0.51 18.84 7.15 87.66 0.63 19.46 16 11 O -0.59 -25.11 15.98 -3.04 -0.05 -25.16 16 12 N -0.70 -26.02 3.67 -463.07 -1.70 -27.72 16 13 C 0.14 5.16 4.45 86.38 0.38 5.54 16 14 C 0.13 4.83 3.21 44.97 0.14 4.98 16 15 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 16 C 0.06 1.90 6.29 72.08 0.45 2.35 16 17 O -0.40 -14.60 10.74 -148.98 -1.60 -16.20 16 18 C 0.05 1.70 6.98 72.08 0.50 2.20 16 19 C 0.15 6.77 5.38 86.35 0.46 7.24 16 20 N -0.60 -27.60 3.03 -673.74 -2.04 -29.64 16 21 C -0.24 -11.98 7.04 84.03 0.59 -11.39 16 22 H 0.07 3.30 5.82 -2.91 -0.02 3.28 16 23 C -0.03 -1.44 5.08 84.86 0.43 -1.00 16 24 N -0.92 -49.93 11.11 21.65 0.24 -49.69 16 25 Si 0.94 42.50 29.56 68.60 2.03 44.53 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 C -0.09 -2.46 4.49 30.59 0.14 -2.32 16 30 C -0.11 -2.34 4.85 30.59 0.15 -2.19 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.85 6.43 -2.39 -0.02 0.83 16 34 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.06 0.82 6.43 -2.38 -0.02 0.81 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 1.48 6.43 -2.38 -0.02 1.47 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.67 7.56 -2.39 -0.02 1.65 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.41 16.18 6.73 -92.71 -0.62 15.56 16 43 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 45 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.07 3.38 6.31 -2.39 -0.02 3.36 16 51 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 52 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 53 H 0.05 1.52 8.10 -2.38 -0.02 1.50 16 54 H 0.08 1.47 6.43 -2.39 -0.02 1.46 16 55 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -59.28 407.41 2.49 -56.79 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.23 Total: 35.89 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.39 Total: 11.21 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -3.50 Total: -107.05 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.65 Total: -41.36 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -59.28 2.49 -56.79 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051181772.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.179 kcal (2) G-P(sol) polarization free energy of solvation -59.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds