Wall clock time and date at job start Tue Mar 31 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47271 * 2 1 4 4 H 1.09002 * 109.46783 * 55.00232 * 3 2 1 5 5 C 1.53000 * 109.47297 * 175.00527 * 3 2 1 6 6 C 1.52998 * 109.47297 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47012 * 299.99969 * 6 5 3 8 8 H 1.08994 * 109.46838 * 299.99539 * 7 6 5 9 9 C 1.50707 * 109.46783 * 179.97438 * 7 6 5 10 10 O 1.21277 * 119.99946 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99602 * 179.97438 * 9 7 6 12 12 C 1.46505 * 119.99883 * 180.02562 * 11 9 7 13 13 C 1.52995 * 109.46940 * 180.02562 * 12 11 9 14 14 H 1.09002 * 108.57241 * 62.05946 * 13 12 11 15 15 C 1.46921 * 108.62065 * 179.97438 * 13 12 11 16 16 N 1.50119 * 106.78035 * 177.91807 * 15 13 12 17 17 C 1.36935 * 120.63345 * 111.34769 * 16 15 13 18 18 H 1.07990 * 120.00327 * 210.06881 * 17 16 15 19 19 C 1.38818 * 119.99954 * 30.07064 * 17 16 15 20 20 N 1.31618 * 119.99846 * 25.45510 * 19 17 16 21 21 Si 1.86798 * 120.00004 * 205.18567 * 19 17 16 22 22 H 1.48490 * 109.47347 * 89.99844 * 21 19 17 23 23 H 1.48501 * 109.47131 * 210.00133 * 21 19 17 24 24 H 1.48499 * 109.46847 * 329.99499 * 21 19 17 25 25 C 1.43425 * 118.73015 * 291.61932 * 16 15 13 26 26 C 1.54796 * 116.57549 * 89.22099 * 25 16 15 27 27 C 1.55188 * 108.79658 * 319.49302 * 26 25 16 28 28 O 1.39641 * 110.57342 * 322.06871 * 27 26 25 29 29 C 1.53000 * 109.47064 * 59.99888 * 7 6 5 30 30 C 1.52998 * 109.47297 * 299.99937 * 29 7 6 31 31 H 1.08995 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46532 * 299.99983 * 1 2 3 33 33 H 1.08996 * 109.47608 * 59.99582 * 1 2 3 34 34 H 1.09001 * 109.46532 * 240.00017 * 2 1 3 35 35 H 1.08996 * 109.47608 * 120.00418 * 2 1 3 36 36 H 1.08994 * 109.47138 * 59.99532 * 5 3 2 37 37 H 1.09000 * 109.46628 * 300.00204 * 5 3 2 38 38 H 1.08996 * 109.46890 * 179.97438 * 6 5 3 39 39 H 1.09002 * 109.46783 * 59.99704 * 6 5 3 40 40 H 0.97003 * 120.00402 * 0.02562 * 11 9 7 41 41 H 1.08997 * 109.46590 * 60.00904 * 12 11 9 42 42 H 1.08994 * 109.47187 * 300.00091 * 12 11 9 43 43 H 1.09009 * 109.98638 * 58.60518 * 15 13 12 44 44 H 1.08992 * 110.06805 * 297.28265 * 15 13 12 45 45 H 0.97002 * 120.00448 * 4.79687 * 20 19 17 46 46 H 1.08996 * 108.12624 * 210.83960 * 25 16 15 47 47 H 1.09001 * 108.12902 * 327.32689 * 25 16 15 48 48 H 1.08995 * 109.66143 * 199.66203 * 26 25 16 49 49 H 1.08998 * 109.64974 * 79.30903 * 26 25 16 50 50 H 1.09007 * 109.25371 * 201.79319 * 27 26 25 51 51 H 1.08994 * 109.26252 * 82.35904 * 27 26 25 52 52 H 1.09003 * 109.47004 * 60.00129 * 29 7 6 53 53 H 1.09000 * 109.46628 * 179.97438 * 29 7 6 54 54 H 1.09002 * 109.46783 * 300.00296 * 30 29 7 55 55 H 1.08996 * 109.46890 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4443 0.1256 6 6 4.0750 2.8868 0.1249 7 6 3.6702 3.5703 -1.1827 8 1 4.1047 3.0309 -2.0242 9 6 4.1721 4.9913 -1.1830 10 8 4.7928 5.4153 -0.2313 11 7 3.9319 5.7904 -2.2413 12 6 4.4203 7.1717 -2.2419 13 6 4.0154 7.8552 -3.5494 14 1 2.9271 7.8785 -3.6064 15 6 4.5133 9.2373 -3.5300 16 7 4.1396 9.8511 -4.8481 17 6 3.1970 10.8422 -4.9140 18 1 2.5857 10.9482 -5.7979 19 6 3.0272 11.7108 -3.8446 20 7 4.0246 11.9376 -3.0162 21 14 1.3856 12.5637 -3.5855 22 1 0.5222 11.7226 -2.7182 23 1 1.6087 13.8797 -2.9348 24 1 0.7209 12.7668 -4.8978 25 6 4.7845 9.3755 -6.0376 26 6 4.1109 8.1846 -6.7616 27 6 3.6039 7.1747 -5.6978 28 8 4.5090 7.0821 -4.6385 29 6 2.1453 3.5684 -1.3083 30 6 1.6352 2.1260 -1.3076 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8935 -0.5139 0.8899 36 1 3.9994 0.9053 -0.7162 37 1 3.8533 0.9569 1.0569 38 1 5.1612 2.8880 0.2149 39 1 3.6404 3.4261 0.9666 40 1 3.4358 5.4512 -3.0026 41 1 5.5066 7.1729 -2.1522 42 1 3.9855 7.7112 -1.4005 43 1 5.5968 9.2414 -3.4109 44 1 4.0471 9.7914 -2.7154 45 1 4.8977 11.5532 -3.1915 46 1 4.8469 10.2035 -6.7437 47 1 5.8013 9.0813 -5.7777 48 1 4.8341 7.6954 -7.4140 49 1 3.2694 8.5441 -7.3538 50 1 3.4892 6.1938 -6.1593 51 1 2.6382 7.5075 -5.3176 52 1 1.7108 4.1079 -0.4666 53 1 1.8570 4.0558 -2.2396 54 1 2.0698 1.5866 -2.1492 55 1 0.5490 2.1247 -1.3975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073865379.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:35 Heat of formation + Delta-G solvation = -109.771940 kcal Electronic energy + Delta-G solvation = -30972.445397 eV Core-core repulsion = 27007.867643 eV Total energy + Delta-G solvation = -3964.577754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.47367 -40.71907 -39.10480 -37.14566 -36.11685 -34.88514 -33.97302 -33.15743 -31.71303 -30.54522 -29.90267 -27.40295 -26.99786 -25.27555 -24.13552 -23.58076 -22.60654 -22.23547 -21.52657 -20.94418 -20.61996 -19.41190 -18.30911 -17.85498 -17.35631 -16.71705 -16.61300 -16.22749 -15.90412 -15.68555 -15.53516 -15.46596 -14.95229 -14.90780 -14.81024 -14.44430 -14.38187 -14.25217 -13.98397 -13.76071 -13.61390 -13.57359 -13.05511 -12.92354 -12.77052 -12.67967 -12.46100 -12.42180 -12.12485 -12.09269 -12.00249 -11.92307 -11.78930 -11.64564 -11.63069 -11.35691 -11.26798 -11.21707 -10.83698 -10.71436 -10.51071 -10.45983 -10.14871 -8.96050 -8.30088 -5.47797 1.58125 1.61732 1.63971 1.81808 2.14243 2.62831 2.86456 3.12439 3.38163 3.58226 3.70431 3.76618 3.91243 3.92255 4.06297 4.14284 4.15821 4.22994 4.24918 4.35882 4.41893 4.45690 4.49034 4.51569 4.55859 4.58644 4.62866 4.64143 4.73243 4.74547 4.78000 4.82296 4.95538 4.98686 5.04237 5.06557 5.09397 5.15823 5.16284 5.20855 5.22875 5.26272 5.26703 5.29789 5.34627 5.38389 5.42109 5.57503 5.65645 5.86216 6.23754 6.33236 6.53268 7.01632 7.22723 7.69656 8.20404 8.95452 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002480 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.781045 B =11288.086693 C =11611.474160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.060 0.940 5 C -0.107 4.107 6 C -0.097 4.097 7 C -0.094 4.094 8 H 0.118 0.882 9 C 0.509 3.491 10 O -0.590 6.590 11 N -0.707 5.707 12 C 0.128 3.872 13 C 0.083 3.917 14 H 0.066 0.934 15 C 0.119 3.881 16 N -0.607 5.607 17 C -0.353 4.353 18 H 0.051 0.949 19 C -0.071 4.071 20 N -0.936 5.936 21 Si 1.113 2.887 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.273 1.273 25 C 0.155 3.845 26 C -0.161 4.161 27 C 0.062 3.938 28 O -0.356 6.356 29 C -0.108 4.108 30 C -0.108 4.108 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.025 0.975 44 H 0.073 0.927 45 H 0.255 0.745 46 H 0.021 0.979 47 H 0.022 0.978 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.101 0.899 51 H 0.047 0.953 52 H 0.053 0.947 53 H 0.077 0.923 54 H 0.077 0.923 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 -25.677 0.804 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.108 4.108 4 H 0.078 0.922 5 C -0.144 4.144 6 C -0.135 4.135 7 C -0.116 4.116 8 H 0.136 0.864 9 C 0.297 3.703 10 O -0.471 6.471 11 N -0.359 5.359 12 C 0.002 3.998 13 C 0.024 3.976 14 H 0.084 0.916 15 C -0.006 4.006 16 N -0.330 5.330 17 C -0.482 4.482 18 H 0.069 0.931 19 C -0.268 4.268 20 N -0.577 5.577 21 Si 0.938 3.062 22 H -0.207 1.207 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.027 3.973 26 C -0.202 4.202 27 C -0.015 4.015 28 O -0.274 6.274 29 C -0.146 4.146 30 C -0.145 4.145 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.119 0.881 51 H 0.066 0.934 52 H 0.072 0.928 53 H 0.096 0.904 54 H 0.096 0.904 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.749 -24.421 2.435 25.454 hybrid contribution 0.997 -0.081 -1.283 1.627 sum -5.752 -24.503 1.153 25.195 Atomic orbital electron populations 1.21837 0.95805 1.01752 1.01894 1.21531 0.95952 0.95553 1.02289 1.21217 0.95080 0.96450 0.98042 0.92173 1.21570 0.95459 0.94646 1.02740 1.21304 1.00511 0.96305 0.95427 1.21371 0.98405 0.89995 1.01781 0.86444 1.21466 0.78490 0.89071 0.81301 1.90675 1.42893 1.77122 1.36362 1.45810 1.57301 1.11945 1.20841 1.21347 0.99424 0.82664 0.96332 1.21616 0.98112 0.91553 0.86340 0.91646 1.20910 0.97237 0.92179 0.90286 1.44084 1.47270 1.40263 1.01354 1.20108 1.13362 1.08971 1.05776 0.93132 1.27141 1.06253 0.96851 0.96580 1.70890 1.01377 1.43098 1.42367 0.82869 0.71853 0.75157 0.76343 1.20733 1.22304 1.19809 1.20315 0.93893 0.94706 0.88364 1.23366 1.01161 0.97178 0.98490 1.22560 0.91547 0.99245 0.88162 1.87602 1.48047 1.67761 1.24007 1.21544 0.91582 0.98960 1.02545 1.21609 1.01393 0.93605 0.97881 0.92474 0.93275 0.92189 0.91330 0.92022 0.90693 0.91335 0.92651 0.93199 0.75012 0.92382 0.91668 0.95638 0.90899 0.93529 0.96072 0.95951 0.90031 0.92020 0.88087 0.93426 0.92768 0.90401 0.90439 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.67 71.98 0.70 -0.82 16 2 C -0.12 -1.16 5.40 30.60 0.17 -0.99 16 3 C -0.09 -1.10 2.19 -10.79 -0.02 -1.12 16 4 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 5 C -0.11 -1.44 5.20 30.59 0.16 -1.28 16 6 C -0.10 -1.92 4.49 30.59 0.14 -1.78 16 7 C -0.09 -1.79 2.53 -11.54 -0.03 -1.82 16 8 H 0.12 1.75 8.14 -2.39 -0.02 1.74 16 9 C 0.51 14.39 7.15 87.66 0.63 15.01 16 10 O -0.59 -22.20 15.98 -3.02 -0.05 -22.25 16 11 N -0.71 -19.15 5.29 -463.07 -2.45 -21.60 16 12 C 0.13 4.34 5.27 86.38 0.45 4.79 16 13 C 0.08 3.03 2.16 28.71 0.06 3.09 16 14 H 0.07 2.41 6.76 -2.39 -0.02 2.40 16 15 C 0.12 5.45 4.07 83.79 0.34 5.79 16 16 N -0.61 -29.61 2.42 -707.10 -1.71 -31.32 16 17 C -0.35 -19.08 9.47 84.04 0.80 -18.29 16 18 H 0.05 2.76 7.95 -2.92 -0.02 2.73 16 19 C -0.07 -3.95 4.76 84.86 0.40 -3.54 16 20 N -0.94 -56.04 12.26 21.65 0.27 -55.77 16 21 Si 1.11 49.72 29.99 68.60 2.06 51.78 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.15 6.54 5.28 87.56 0.46 7.00 16 26 C -0.16 -5.20 6.74 31.96 0.22 -4.98 16 27 C 0.06 1.82 6.38 72.73 0.46 2.28 16 28 O -0.36 -11.77 9.34 -137.19 -1.28 -13.05 16 29 C -0.11 -1.68 5.10 30.59 0.16 -1.52 16 30 C -0.11 -1.23 4.96 30.59 0.15 -1.08 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.56 6.56 -2.39 -0.02 0.54 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.41 8.95 7.61 -92.71 -0.71 8.25 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.07 3.79 5.85 -2.39 -0.01 3.77 16 45 H 0.25 15.65 6.95 -92.71 -0.64 15.00 16 46 H 0.02 0.94 7.98 -2.39 -0.02 0.92 16 47 H 0.02 0.95 7.99 -2.39 -0.02 0.93 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 49 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 51 H 0.05 1.49 6.66 -2.39 -0.02 1.48 16 52 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.08 1.05 7.56 -2.39 -0.02 1.04 16 54 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 55 H 0.08 0.79 6.56 -2.39 -0.02 0.78 16 Total: -1.00 -68.08 412.31 2.34 -65.75 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.26 Total: 25.73 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.24 Total: 0.74 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.90 Total: -108.69 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.33 Total: -35.30 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.06 Total: 51.78 kcal Total: -68.08 2.34 -65.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073865379.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.025 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds