Wall clock time and date at job start Tue Mar 31 2020 22:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99735 * 2 1 4 4 H 1.09007 * 110.88502 * 32.42876 * 3 2 1 5 5 C 1.54903 * 111.00692 * 268.54628 * 3 2 1 6 6 N 1.47428 * 104.83409 * 204.91530 * 5 3 2 7 7 C 1.36937 * 125.64860 * 204.08953 * 6 5 3 8 8 H 1.08004 * 119.99446 * 163.18793 * 7 6 5 9 9 C 1.38809 * 120.00130 * 343.19292 * 7 6 5 10 10 N 1.31621 * 119.99971 * 331.97080 * 9 7 6 11 11 Si 1.86803 * 119.99991 * 151.96884 * 9 7 6 12 12 H 1.48500 * 109.47116 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.46892 * 299.99910 * 11 9 7 14 14 H 1.48506 * 109.47029 * 59.99771 * 11 9 7 15 15 C 1.47019 * 108.70162 * 24.35641 * 6 5 3 16 16 C 1.54337 * 107.26378 * 358.58517 * 15 6 5 17 17 H 1.09001 * 110.51693 * 96.45553 * 16 15 6 18 18 N 1.46504 * 111.00233 * 219.59917 * 16 15 6 19 19 C 1.34783 * 119.99890 * 268.78351 * 18 16 15 20 20 O 1.21283 * 120.00116 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99620 * 179.97438 * 19 18 16 22 22 H 1.09009 * 109.46962 * 60.00286 * 21 19 18 23 23 C 1.52997 * 109.46934 * 179.97438 * 21 19 18 24 24 C 1.53000 * 109.47512 * 180.02562 * 23 21 19 25 25 C 1.53003 * 109.46711 * 300.00529 * 24 23 21 26 26 H 1.09002 * 109.46996 * 299.99232 * 25 24 23 27 27 C 1.53006 * 109.46956 * 179.97438 * 25 24 23 28 28 C 1.53000 * 109.47115 * 60.00029 * 27 25 24 29 29 C 1.53003 * 109.46956 * 179.97438 * 27 25 24 30 30 C 1.52997 * 109.47564 * 59.99503 * 25 24 23 31 31 C 1.52990 * 109.47531 * 300.00144 * 21 19 18 32 32 H 1.09006 * 109.47362 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47344 * 299.99668 * 1 2 3 34 34 H 1.09006 * 109.47265 * 59.99973 * 1 2 3 35 35 H 1.09003 * 110.36612 * 86.08110 * 5 3 2 36 36 H 1.08994 * 110.37157 * 323.75767 * 5 3 2 37 37 H 0.96991 * 119.99706 * 353.95895 * 10 9 7 38 38 H 1.09005 * 109.88123 * 118.12460 * 15 6 5 39 39 H 1.08995 * 109.88664 * 239.29495 * 15 6 5 40 40 H 0.96995 * 120.00043 * 88.77806 * 18 16 15 41 41 H 1.09001 * 109.47596 * 300.00265 * 23 21 19 42 42 H 1.09002 * 109.47185 * 60.00558 * 23 21 19 43 43 H 1.09002 * 109.46764 * 59.99904 * 24 23 21 44 44 H 1.08995 * 109.47713 * 180.02562 * 24 23 21 45 45 H 1.09002 * 109.46807 * 299.99551 * 27 25 24 46 46 H 1.08996 * 109.47374 * 59.99753 * 28 27 25 47 47 H 1.09001 * 109.46833 * 180.02562 * 28 27 25 48 48 H 1.09005 * 109.46732 * 299.99653 * 28 27 25 49 49 H 1.09000 * 109.47143 * 180.02562 * 29 27 25 50 50 H 1.09002 * 109.46996 * 299.99435 * 29 27 25 51 51 H 1.08996 * 109.47725 * 59.99677 * 29 27 25 52 52 H 1.09009 * 109.46830 * 59.99913 * 30 25 24 53 53 H 1.08996 * 109.47463 * 179.97438 * 30 25 24 54 54 H 1.09002 * 109.46991 * 299.99689 * 31 21 19 55 55 H 1.09004 * 109.47173 * 59.99844 * 31 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5461 5 6 2.2695 1.7979 -1.4456 6 7 3.3610 2.7809 -1.3194 7 6 3.6235 3.7990 -2.1968 8 1 4.2563 4.6210 -1.8962 9 6 3.0762 3.7746 -3.4722 10 7 2.7945 2.6238 -4.0455 11 14 2.7395 5.3750 -4.3749 12 1 2.1592 5.0781 -5.7091 13 1 1.7820 6.1944 -3.5892 14 1 4.0102 6.1248 -4.5439 15 6 4.1248 2.4830 -0.0991 16 6 3.4484 1.2740 0.5811 17 1 3.9550 0.3486 0.3068 18 7 3.4231 1.4368 2.0368 19 6 4.4342 0.9550 2.7865 20 8 5.3648 0.3862 2.2560 21 6 4.4083 1.1230 4.2839 22 1 3.5231 0.6328 4.6893 23 6 5.6631 0.4911 4.8897 24 6 5.6367 0.6610 6.4100 25 6 5.5980 2.1509 6.7559 26 1 6.4835 2.6410 6.3509 27 6 5.5710 2.3210 8.2762 28 6 6.8255 1.6890 8.8825 29 6 5.5330 3.8109 8.6222 30 6 4.3433 2.7829 6.1501 31 6 4.3695 2.6129 4.6293 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.3760 2.2731 -1.8505 36 1 2.5787 0.9670 -2.0797 37 1 3.0490 1.7926 -3.6154 38 1 5.1549 2.2371 -0.3573 39 1 4.1035 3.3426 0.5707 40 1 2.6786 1.8914 2.4611 41 1 5.6904 -0.5704 4.6436 42 1 6.5485 0.9809 4.4844 43 1 4.7513 0.1710 6.8150 44 1 6.5308 0.2112 6.8415 45 1 4.6853 1.8310 8.6809 46 1 7.7111 2.1789 8.4778 47 1 6.8060 1.8097 9.9656 48 1 6.8529 0.6275 8.6361 49 1 5.5142 3.9321 9.7052 50 1 6.4188 4.3005 8.2176 51 1 4.6395 4.2616 8.1902 52 1 3.4579 2.2928 6.5551 53 1 4.3156 3.8442 6.3969 54 1 5.2547 3.1031 4.2240 55 1 3.4753 3.0628 4.1978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082274031.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:42 Heat of formation + Delta-G solvation = -112.833877 kcal Electronic energy + Delta-G solvation = -30828.814642 eV Core-core repulsion = 26864.104112 eV Total energy + Delta-G solvation = -3964.710530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.53567 -40.26752 -39.25057 -37.72619 -35.82957 -35.81665 -33.79121 -31.82170 -31.04125 -30.32251 -28.89926 -27.94381 -27.60655 -26.08951 -24.76276 -23.30828 -22.54787 -22.26166 -21.64803 -20.68922 -20.57441 -19.72301 -18.40006 -18.07381 -17.17760 -16.71864 -16.41054 -16.10201 -15.82887 -15.67157 -15.58449 -15.24819 -15.12403 -15.07102 -14.85662 -14.50715 -14.39196 -14.20918 -14.09932 -13.84214 -13.30116 -13.26757 -13.02820 -12.97066 -12.73909 -12.65881 -12.55546 -12.48940 -12.46579 -12.22609 -11.99562 -11.97061 -11.90802 -11.83163 -11.69842 -11.55744 -11.25509 -11.17276 -10.85719 -10.73260 -10.66239 -10.54345 -10.16946 -9.14940 -8.39730 -5.43991 1.56362 1.58329 1.64573 1.84329 2.00064 2.47155 2.67913 3.13518 3.39993 3.47592 3.65735 3.69645 3.74881 3.80148 3.83516 3.99764 4.09554 4.13848 4.19964 4.28564 4.37936 4.42263 4.45851 4.48381 4.52817 4.58751 4.63061 4.68698 4.69411 4.73067 4.80271 4.80749 4.86642 4.87434 4.90845 4.94515 5.06356 5.08151 5.14178 5.18201 5.20259 5.27538 5.29226 5.32790 5.36452 5.43457 5.48502 5.57859 5.61780 5.69759 6.10220 6.23350 6.48610 6.76686 7.20915 7.60222 8.14661 8.90746 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002452 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.866087 B =11414.474032 C =12327.062418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.088 3.912 4 H 0.101 0.899 5 C 0.136 3.864 6 N -0.617 5.617 7 C -0.352 4.352 8 H 0.064 0.936 9 C -0.076 4.076 10 N -0.941 5.941 11 Si 1.121 2.879 12 H -0.291 1.291 13 H -0.273 1.273 14 H -0.275 1.275 15 C 0.131 3.869 16 C 0.155 3.845 17 H 0.075 0.925 18 N -0.701 5.701 19 C 0.512 3.488 20 O -0.587 6.587 21 C -0.092 4.092 22 H 0.123 0.877 23 C -0.098 4.098 24 C -0.107 4.107 25 C -0.083 4.083 26 H 0.056 0.944 27 C -0.087 4.087 28 C -0.151 4.151 29 C -0.150 4.150 30 C -0.107 4.107 31 C -0.109 4.109 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.004 0.996 37 H 0.253 0.747 38 H 0.005 0.995 39 H 0.046 0.954 40 H 0.416 0.584 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.047 0.953 51 H 0.062 0.938 52 H 0.080 0.920 53 H 0.076 0.924 54 H 0.050 0.950 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -0.989 28.719 28.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.029 3.971 4 H 0.119 0.881 5 C 0.009 3.991 6 N -0.345 5.345 7 C -0.480 4.480 8 H 0.082 0.918 9 C -0.272 4.272 10 N -0.583 5.583 11 Si 0.944 3.056 12 H -0.217 1.217 13 H -0.199 1.199 14 H -0.201 1.201 15 C 0.005 3.995 16 C 0.048 3.952 17 H 0.093 0.907 18 N -0.353 5.353 19 C 0.301 3.699 20 O -0.467 6.467 21 C -0.113 4.113 22 H 0.141 0.859 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.102 4.102 26 H 0.075 0.925 27 C -0.106 4.106 28 C -0.209 4.209 29 C -0.208 4.208 30 C -0.145 4.145 31 C -0.147 4.147 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.254 0.746 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.081 0.919 52 H 0.099 0.901 53 H 0.095 0.905 54 H 0.069 0.931 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.409 -0.841 26.944 27.065 hybrid contribution 0.793 -0.601 0.574 1.149 sum -1.616 -1.441 27.519 27.604 Atomic orbital electron populations 1.23039 0.78961 1.04223 1.00939 1.87883 1.22045 1.26430 1.94875 1.23361 0.93339 0.85266 0.95153 0.88113 1.21777 0.91138 0.91314 0.94832 1.44642 1.30478 1.34056 1.25354 1.20039 1.34314 0.98550 0.95053 0.91783 1.27350 0.99540 1.06018 0.94334 1.70908 1.50391 0.98339 1.38642 0.82806 0.77239 0.70956 0.74630 1.21678 1.19916 1.20093 1.21709 0.93648 0.95411 0.88723 1.21501 0.95113 0.97663 0.80883 0.90687 1.45774 1.24920 1.59422 1.05199 1.21577 0.80803 0.76423 0.91099 1.90692 1.36172 1.44266 1.75522 1.21379 1.02343 0.99765 0.87769 0.85872 1.21315 0.95877 1.00085 0.96334 1.21621 1.02980 0.96548 0.93254 1.21227 0.98272 0.95481 0.95190 0.92500 1.21105 0.98869 0.96442 0.94151 1.21916 0.97429 1.00897 1.00611 1.21909 1.01900 0.95592 1.01356 1.21625 0.98372 1.01757 0.92701 1.21560 1.02622 0.92300 0.98198 0.87667 0.91511 0.94655 0.94569 0.97793 0.93698 0.97716 0.93581 0.74638 0.92635 0.93533 0.90489 0.91137 0.90504 0.93409 0.92408 0.92249 0.92480 0.93416 0.91889 0.90117 0.90527 0.93137 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.89 113.37 1.23 1.83 16 2 O -0.39 -13.45 10.51 -148.98 -1.57 -15.01 16 3 C 0.09 3.21 3.12 31.98 0.10 3.31 16 4 H 0.10 3.07 7.77 -2.38 -0.02 3.05 16 5 C 0.14 6.62 5.03 86.85 0.44 7.06 16 6 N -0.62 -32.72 3.29 -691.98 -2.28 -35.00 16 7 C -0.35 -20.44 10.02 84.03 0.84 -19.60 16 8 H 0.06 3.68 7.97 -2.91 -0.02 3.66 16 9 C -0.08 -4.46 5.09 84.86 0.43 -4.03 16 10 N -0.94 -59.19 12.93 21.65 0.28 -58.91 16 11 Si 1.12 51.18 30.00 68.60 2.06 53.24 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.13 5.95 7.01 86.73 0.61 6.56 16 16 C 0.16 5.86 3.04 46.18 0.14 6.00 16 17 H 0.07 3.30 7.55 -2.39 -0.02 3.29 16 18 N -0.70 -19.60 5.01 -436.89 -2.19 -21.79 16 19 C 0.51 15.02 7.15 87.66 0.63 15.65 16 20 O -0.59 -23.32 15.63 -3.04 -0.05 -23.37 16 21 C -0.09 -1.75 2.52 -11.54 -0.03 -1.77 16 22 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 23 C -0.10 -1.99 4.49 30.59 0.14 -1.85 16 24 C -0.11 -1.46 4.85 30.60 0.15 -1.32 16 25 C -0.08 -1.05 1.78 -10.79 -0.02 -1.07 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 C -0.09 -0.90 2.51 -10.79 -0.03 -0.93 16 28 C -0.15 -1.61 8.84 71.98 0.64 -0.97 16 29 C -0.15 -1.51 8.84 71.98 0.64 -0.87 16 30 C -0.11 -1.22 4.85 30.61 0.15 -1.08 16 31 C -0.11 -1.72 5.10 30.61 0.16 -1.56 16 32 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.07 1.26 8.11 -2.38 -0.02 1.24 16 34 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.04 1.87 7.95 -2.39 -0.02 1.85 16 36 H 0.00 0.24 6.81 -2.39 -0.02 0.22 16 37 H 0.25 16.43 6.06 -92.71 -0.56 15.87 16 38 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.05 1.95 8.03 -2.39 -0.02 1.93 16 40 H 0.42 8.43 7.98 -92.71 -0.74 7.69 16 41 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 42 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.06 0.62 6.43 -2.38 -0.02 0.60 16 49 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.06 0.58 6.43 -2.39 -0.02 0.56 16 52 H 0.08 0.70 8.14 -2.38 -0.02 0.69 16 53 H 0.08 0.81 6.43 -2.39 -0.02 0.79 16 54 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 55 H 0.08 1.08 7.56 -2.38 -0.02 1.06 16 Total: -1.00 -76.66 417.38 2.78 -73.88 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.32 Total: 21.60 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.21 Total: 5.37 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.19 Total: -115.70 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.61 Total: -38.38 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.06 Total: 53.24 kcal Total: -76.66 2.78 -73.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082274031.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.952 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds