Wall clock time and date at job start Wed Apr 1 2020 00:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47214 * 2 1 4 4 H 1.08994 * 109.47066 * 305.48217 * 3 2 1 5 5 O 1.42896 * 109.46734 * 65.48653 * 3 2 1 6 6 C 1.42903 * 113.99822 * 269.99493 * 5 3 2 7 7 C 1.53001 * 109.47232 * 270.00498 * 6 5 3 8 8 C 1.52997 * 109.47204 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47066 * 59.99863 * 8 7 6 10 10 C 1.53001 * 109.47221 * 300.00126 * 9 8 7 11 11 C 1.52993 * 109.47391 * 150.00401 * 6 5 3 12 12 C 1.50698 * 109.46821 * 185.48123 * 3 2 1 13 13 O 1.21280 * 120.00235 * 252.82654 * 12 3 2 14 14 N 1.34783 * 120.00227 * 72.83270 * 12 3 2 15 15 C 1.47420 * 125.65215 * 175.10382 * 14 12 3 16 16 C 1.54909 * 104.83440 * 204.16150 * 15 14 12 17 17 H 1.08996 * 110.99982 * 81.06387 * 16 15 14 18 18 C 1.52997 * 111.00421 * 204.91755 * 16 15 14 19 19 C 1.55404 * 101.66448 * 323.07805 * 16 15 14 20 20 H 1.09000 * 110.69261 * 277.04276 * 19 16 15 21 21 N 1.46504 * 110.85490 * 153.69934 * 19 16 15 22 22 C 1.36930 * 120.00237 * 160.08165 * 21 19 16 23 23 H 1.08003 * 119.99892 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00114 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99799 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00060 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47088 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47329 * 119.99826 * 26 24 22 29 29 H 1.48506 * 109.46834 * 240.00101 * 26 24 22 30 30 C 1.47022 * 125.64321 * 355.14348 * 14 12 3 31 31 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46767 * 299.99747 * 1 2 3 33 33 H 1.09003 * 109.47034 * 59.99869 * 1 2 3 34 34 H 1.09002 * 109.47206 * 240.00010 * 2 1 3 35 35 H 1.08997 * 109.47184 * 120.00539 * 2 1 3 36 36 H 1.09001 * 109.47079 * 30.00027 * 6 5 3 37 37 H 1.09006 * 109.47136 * 299.99890 * 7 6 5 38 38 H 1.08996 * 109.47261 * 59.99825 * 7 6 5 39 39 H 1.08999 * 109.47432 * 300.00428 * 8 7 6 40 40 H 1.08997 * 109.47568 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.47172 * 179.97438 * 9 8 7 42 42 H 1.09006 * 109.46897 * 60.00066 * 9 8 7 43 43 H 1.09001 * 109.46704 * 299.99926 * 10 9 8 44 44 H 1.08996 * 109.47261 * 179.97438 * 10 9 8 45 45 H 1.09007 * 109.47071 * 300.00399 * 11 6 5 46 46 H 1.09001 * 109.47315 * 59.99770 * 11 6 5 47 47 H 1.09003 * 110.36321 * 323.00480 * 15 14 12 48 48 H 1.09006 * 110.36628 * 85.21332 * 15 14 12 49 49 H 1.08998 * 109.47175 * 58.54828 * 18 16 15 50 50 H 1.09003 * 109.46898 * 178.54862 * 18 16 15 51 51 H 1.09000 * 109.47056 * 298.54046 * 18 16 15 52 52 H 0.97004 * 119.99098 * 340.08269 * 21 19 16 53 53 H 0.96995 * 119.99706 * 179.97438 * 25 24 22 54 54 H 1.08996 * 109.88189 * 298.32276 * 30 14 12 55 55 H 1.08996 * 109.88470 * 59.33398 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5988 1.9838 -0.8368 5 8 1.6718 2.0778 1.2258 6 6 0.4022 2.7323 1.1827 7 6 0.5905 4.1815 0.7299 8 6 -0.7688 4.8820 0.6831 9 6 -1.4016 4.8611 2.0760 10 6 -1.5900 3.4118 2.5289 11 6 -0.2300 2.7114 2.5758 12 6 3.5409 1.4445 -0.1357 13 8 4.2357 1.7234 0.8184 14 7 4.1112 1.1366 -1.3175 15 6 5.5532 1.1982 -1.6177 16 6 5.6312 1.3717 -3.1551 17 1 5.4736 2.4121 -3.4393 18 6 6.9639 0.8527 -3.6986 19 6 4.4497 0.4819 -3.6320 20 1 4.7535 -0.5633 -3.6896 21 7 3.9357 0.9455 -4.9232 22 6 3.1976 0.1016 -5.7093 23 1 2.9940 -0.9058 -5.3773 24 6 2.7110 0.5408 -6.9329 25 7 2.9587 1.7686 -7.3373 26 14 1.7035 -0.6103 -8.0050 27 1 1.5677 -1.9251 -7.3282 28 1 0.3564 -0.0266 -8.2283 29 1 2.3859 -0.7945 -9.3110 30 6 3.3979 0.6844 -2.5210 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 -0.2501 2.2139 0.4799 37 1 1.2429 4.7000 1.4327 38 1 1.0409 4.1965 -0.2626 39 1 -1.4208 4.3635 -0.0199 40 1 -0.6347 5.9146 0.3609 41 1 -2.3698 5.3605 2.0428 42 1 -0.7496 5.3796 2.7791 43 1 -2.2419 2.8934 1.8258 44 1 -2.0403 3.3969 3.5214 45 1 -0.3642 1.6788 2.8984 46 1 0.4223 3.2297 3.2786 47 1 6.0089 2.0519 -1.1160 48 1 6.0439 0.2738 -1.3132 49 1 7.0773 -0.1996 -3.4384 50 1 6.9817 0.9629 -4.7829 51 1 7.7821 1.4254 -3.2618 52 1 4.1183 1.8504 -5.2211 53 1 2.6190 2.0754 -8.1924 54 1 2.8876 -0.2569 -2.3176 55 1 2.6744 1.4393 -2.8287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082509886.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:12 Heat of formation + Delta-G solvation = -108.820505 kcal Electronic energy + Delta-G solvation = -31397.192259 eV Core-core repulsion = 27432.655762 eV Total energy + Delta-G solvation = -3964.536497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.55319 -40.27053 -38.94770 -37.55288 -35.87735 -34.57817 -33.57607 -32.47951 -31.77265 -30.88764 -29.19542 -28.79161 -26.65286 -25.84553 -23.64414 -23.44813 -23.14958 -22.54440 -21.40060 -20.97928 -20.34559 -19.06649 -18.54004 -17.85797 -17.21172 -17.01420 -16.58025 -16.08128 -16.04398 -15.54734 -15.34326 -15.18855 -15.01722 -14.84975 -14.72240 -14.42091 -14.14767 -14.00193 -13.81471 -13.63578 -13.53330 -13.31436 -13.14829 -13.01612 -12.99169 -12.89244 -12.84635 -12.65234 -12.27028 -12.15033 -12.10081 -12.05027 -12.01617 -11.81459 -11.64082 -11.52827 -11.50598 -11.39702 -11.12052 -10.97503 -10.80856 -10.34703 -9.70447 -9.04786 -7.92521 -5.22321 1.43336 1.50912 1.52546 1.61175 1.66429 2.57248 2.73005 3.30478 3.39305 3.67211 3.70539 3.74637 3.78961 3.79507 3.87106 3.89063 4.01015 4.18072 4.21817 4.23786 4.26064 4.33636 4.36200 4.43627 4.45769 4.52470 4.54329 4.59749 4.63462 4.65450 4.71999 4.84741 4.87331 4.90308 4.96363 5.05045 5.05970 5.09384 5.12138 5.12988 5.18970 5.20343 5.21527 5.26812 5.30702 5.32118 5.37423 5.47417 5.49205 5.57873 6.13414 6.27752 6.42390 7.02968 7.36025 8.06790 8.31104 9.30494 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.003200 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.267406 B = 8747.779473 C =10166.070198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.084 3.916 4 H 0.086 0.914 5 O -0.372 6.372 6 C 0.075 3.925 7 C -0.144 4.144 8 C -0.115 4.115 9 C -0.121 4.121 10 C -0.112 4.112 11 C -0.112 4.112 12 C 0.525 3.475 13 O -0.571 6.571 14 N -0.610 5.610 15 C 0.117 3.883 16 C -0.103 4.103 17 H 0.070 0.930 18 C -0.127 4.127 19 C 0.172 3.828 20 H 0.073 0.927 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.082 0.918 24 C -0.069 4.069 25 N -0.967 5.967 26 Si 0.966 3.034 27 H -0.263 1.263 28 H -0.297 1.297 29 H -0.298 1.298 30 C 0.081 3.919 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.049 0.951 51 H 0.071 0.929 52 H 0.375 0.625 53 H 0.250 0.750 54 H 0.077 0.923 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 0.356 17.660 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.023 3.977 4 H 0.104 0.896 5 O -0.291 6.291 6 C 0.018 3.982 7 C -0.182 4.182 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.149 4.149 11 C -0.149 4.149 12 C 0.313 3.687 13 O -0.450 6.450 14 N -0.344 5.344 15 C -0.005 4.005 16 C -0.123 4.123 17 H 0.089 0.911 18 C -0.185 4.185 19 C 0.062 3.938 20 H 0.091 0.909 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.100 0.900 24 C -0.262 4.262 25 N -0.617 5.617 26 Si 0.796 3.204 27 H -0.187 1.187 28 H -0.224 1.224 29 H -0.226 1.226 30 C -0.044 4.044 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.085 0.915 50 H 0.068 0.932 51 H 0.090 0.910 52 H 0.208 0.792 53 H 0.059 0.941 54 H 0.095 0.905 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.377 0.350 18.334 19.415 hybrid contribution -0.305 0.181 -1.328 1.375 sum -6.682 0.531 17.006 18.279 Atomic orbital electron populations 1.21928 0.93171 1.03546 1.02433 1.22018 0.98567 0.93593 1.03522 1.21859 0.90412 0.96371 0.89055 0.89635 1.88017 1.37996 1.71057 1.32013 1.22642 0.84112 0.91956 0.99486 1.22075 0.98888 0.96595 1.00677 1.21497 0.94829 1.00574 0.98330 1.21583 1.01286 0.97011 0.95933 1.21519 0.95285 0.95381 1.02728 1.21589 0.96965 1.01808 0.94580 1.20550 0.90720 0.76217 0.81175 1.90648 1.65391 1.50350 1.38610 1.48496 1.09269 1.65647 1.10988 1.22321 0.80843 1.02455 0.94922 1.22571 0.96677 0.99987 0.93089 0.91116 1.21560 0.94640 1.01557 1.00724 1.21465 0.90747 0.97496 0.84090 0.90925 1.42473 1.62431 1.14079 1.16996 1.19648 1.23691 0.95258 0.98280 0.89984 1.25478 1.03151 0.97854 0.99676 1.69815 1.51941 1.17845 1.22117 0.85184 0.77750 0.78848 0.78640 1.18699 1.22422 1.22606 1.23174 0.97175 0.99436 0.84663 0.90556 0.91388 0.92139 0.89942 0.91080 0.89989 0.92444 0.93457 0.91287 0.91352 0.90276 0.92178 0.90951 0.89951 0.90889 0.92173 0.91086 0.89920 0.91476 0.93227 0.90966 0.79241 0.94134 0.90485 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.59 71.98 0.62 -2.25 16 2 C -0.14 -3.28 5.55 30.60 0.17 -3.11 16 3 C 0.08 2.39 2.04 29.85 0.06 2.46 16 4 H 0.09 2.37 7.30 -2.39 -0.02 2.35 16 5 O -0.37 -10.93 9.14 -130.26 -1.19 -12.12 16 6 C 0.07 1.66 1.38 30.59 0.04 1.71 16 7 C -0.14 -3.25 5.53 30.59 0.17 -3.08 16 8 C -0.11 -1.95 5.92 30.60 0.18 -1.77 16 9 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 10 C -0.11 -1.48 5.93 30.61 0.18 -1.30 16 11 C -0.11 -2.04 5.45 30.61 0.17 -1.87 16 12 C 0.52 17.94 7.17 87.66 0.63 18.56 16 13 O -0.57 -23.50 16.84 15.69 0.26 -23.23 16 14 N -0.61 -19.24 3.33 -811.80 -2.70 -21.94 16 15 C 0.12 3.37 6.36 86.86 0.55 3.92 16 16 C -0.10 -3.10 3.26 -9.32 -0.03 -3.13 16 17 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 18 C -0.13 -3.29 9.30 71.98 0.67 -2.63 16 19 C 0.17 6.01 3.08 46.27 0.14 6.15 16 20 H 0.07 2.48 8.00 -2.39 -0.02 2.47 16 21 N -0.72 -32.57 5.18 -316.91 -1.64 -34.21 16 22 C -0.24 -11.88 9.98 84.04 0.84 -11.04 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 24 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 25 N -0.97 -55.93 13.06 21.65 0.28 -55.65 16 26 Si 0.97 43.30 29.55 68.60 2.03 45.33 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 29 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 30 C 0.08 2.60 5.81 86.73 0.50 3.10 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.19 5.57 -2.39 -0.01 1.18 16 33 H 0.06 1.11 8.03 -2.39 -0.02 1.09 16 34 H 0.08 1.94 5.56 -2.39 -0.01 1.92 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 1.63 5.23 -2.39 -0.01 1.62 16 37 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.05 1.19 7.96 -2.39 -0.02 1.17 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 45 H 0.07 1.26 7.91 -2.38 -0.02 1.24 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 2.09 8.09 -2.39 -0.02 2.07 16 48 H 0.08 2.14 8.04 -2.38 -0.02 2.12 16 49 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 50 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.38 18.68 7.72 -92.71 -0.72 17.96 16 53 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 54 H 0.08 2.26 6.06 -2.39 -0.01 2.24 16 55 H 0.06 2.07 7.81 -2.39 -0.02 2.06 16 Total: -1.00 -64.72 418.42 2.72 -62.00 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: 0.14 Total: 38.81 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.54 Total: 1.01 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -4.06 Total: -111.80 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.93 Total: -35.35 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.72 2.72 -62.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082509886.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.820 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds