Wall clock time and date at job start Tue Mar 31 2020 22:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47153 * 2 1 4 4 H 1.09000 * 109.86652 * 299.86795 * 3 2 1 5 5 C 1.54319 * 109.88316 * 178.69039 * 3 2 1 6 6 H 1.08992 * 110.72012 * 336.75418 * 5 3 2 7 7 N 1.46504 * 110.71705 * 100.02903 * 5 3 2 8 8 C 1.34780 * 119.99661 * 204.99866 * 7 5 3 9 9 O 1.21273 * 120.00288 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99710 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.47276 * 300.00089 * 10 8 7 12 12 C 1.53004 * 109.47130 * 60.00330 * 10 8 7 13 13 C 1.53002 * 109.46798 * 179.97438 * 10 8 7 14 14 C 1.53178 * 109.54519 * 299.55733 * 13 10 8 15 15 C 1.53088 * 109.15971 * 183.15149 * 14 13 10 16 16 O 1.42908 * 109.41572 * 57.61381 * 15 14 13 17 17 C 1.42906 * 114.09377 * 298.83762 * 16 15 14 18 18 C 1.53091 * 109.41748 * 61.15826 * 17 16 15 19 19 C 1.55156 * 102.94201 * 218.38598 * 5 3 2 20 20 C 1.54912 * 101.58100 * 35.50568 * 19 5 3 21 21 N 1.47024 * 109.87907 * 60.87906 * 3 2 1 22 22 C 1.36935 * 125.65351 * 298.32687 * 21 3 2 23 23 H 1.08002 * 119.99894 * 340.52874 * 22 21 3 24 24 C 1.38811 * 120.00120 * 160.53196 * 22 21 3 25 25 N 1.31620 * 119.99789 * 160.78063 * 24 22 21 26 26 Si 1.86801 * 120.00067 * 340.78206 * 24 22 21 27 27 H 1.48501 * 109.46779 * 85.49824 * 26 24 22 28 28 H 1.48494 * 109.47022 * 205.49833 * 26 24 22 29 29 H 1.48503 * 109.46795 * 325.50237 * 26 24 22 30 30 H 1.08999 * 109.46693 * 292.60882 * 1 2 3 31 31 H 1.08997 * 109.47147 * 52.60599 * 1 2 3 32 32 H 1.08998 * 109.46447 * 172.60985 * 1 2 3 33 33 H 1.08998 * 109.47327 * 240.00332 * 2 1 3 34 34 H 1.08997 * 109.47278 * 119.99630 * 2 1 3 35 35 H 0.97001 * 120.00463 * 24.99562 * 7 5 3 36 36 H 1.08996 * 109.46807 * 60.00357 * 11 10 8 37 37 H 1.09005 * 109.46883 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.46788 * 299.99644 * 11 10 8 39 39 H 1.09002 * 109.47181 * 59.99570 * 12 10 8 40 40 H 1.08999 * 109.46994 * 179.97438 * 12 10 8 41 41 H 1.08998 * 109.46864 * 300.00014 * 12 10 8 42 42 H 1.09004 * 109.54064 * 59.83001 * 13 10 8 43 43 H 1.08995 * 109.52063 * 303.05690 * 14 13 10 44 44 H 1.08999 * 109.52168 * 63.24571 * 14 13 10 45 45 H 1.08998 * 109.48563 * 297.62424 * 15 14 13 46 46 H 1.09001 * 109.48905 * 177.59583 * 15 14 13 47 47 H 1.08996 * 109.47805 * 301.17479 * 17 16 15 48 48 H 1.08995 * 109.48742 * 181.14980 * 17 16 15 49 49 H 1.08999 * 109.52348 * 182.48471 * 18 17 16 50 50 H 1.09004 * 109.52098 * 62.29328 * 18 17 16 51 51 H 1.08993 * 111.00924 * 277.43293 * 19 5 3 52 52 H 1.09002 * 111.03538 * 153.58991 * 19 5 3 53 53 H 1.08995 * 110.36783 * 204.15233 * 20 19 5 54 54 H 1.09001 * 110.36733 * 81.82385 * 20 19 5 55 55 H 0.96997 * 119.99523 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6822 1.9620 -0.8890 5 6 3.5829 1.4538 0.0332 6 1 3.9664 0.5230 0.4510 7 7 4.1284 1.6859 -1.3066 8 6 5.3664 1.2511 -1.6147 9 8 6.0289 0.6682 -0.7828 10 6 5.9273 1.4894 -2.9930 11 6 5.0294 0.8155 -4.0325 12 6 5.9849 2.9935 -3.2672 13 6 7.3373 0.9015 -3.0783 14 6 8.2401 1.5834 -2.0457 15 6 9.6659 1.0455 -2.1917 16 8 10.1258 1.2744 -3.5252 17 6 9.3477 0.6219 -4.5307 18 6 7.9091 1.1428 -4.4788 19 6 3.9016 2.6487 0.9702 20 6 2.7456 2.5556 1.9971 21 7 1.5723 2.1382 1.2079 22 6 0.2638 2.3621 1.5438 23 1 -0.5044 2.3116 0.7863 24 6 -0.0752 2.6540 2.8578 25 7 -1.2271 3.2309 3.1276 26 14 1.1032 2.2282 4.2432 27 1 2.0857 3.3287 4.4131 28 1 0.3401 2.0468 5.5040 29 1 1.8209 0.9705 3.9135 30 1 -0.3633 0.3951 0.9487 31 1 -0.3633 0.6241 -0.8164 32 1 -0.3632 -1.0191 -0.1322 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.5986 2.1524 -1.9719 36 1 4.0252 1.2347 -3.9716 37 1 5.4350 0.9882 -5.0295 38 1 4.9885 -0.2561 -3.8372 39 1 6.6246 3.4736 -2.5265 40 1 6.3911 3.1658 -4.2639 41 1 4.9806 3.4127 -3.2062 42 1 7.2984 -0.1696 -2.8799 43 1 8.2380 2.6602 -2.2146 44 1 7.8714 1.3705 -1.0423 45 1 9.6740 -0.0243 -1.9829 46 1 10.3218 1.5581 -1.4880 47 1 9.3517 -0.4534 -4.3526 48 1 9.7742 0.8293 -5.5121 49 1 7.3036 0.6147 -5.2154 50 1 7.9002 2.2108 -4.6967 51 1 3.8657 3.5924 0.4260 52 1 4.8680 2.5173 1.4569 53 1 2.5672 3.5277 2.4567 54 1 2.9743 1.8108 2.7594 55 1 -1.4642 3.4345 4.0458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087649098.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:47 Heat of formation + Delta-G solvation = -91.317032 kcal Electronic energy + Delta-G solvation = -31976.239053 eV Core-core repulsion = 28012.461564 eV Total energy + Delta-G solvation = -3963.777489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.84812 -40.37936 -39.38031 -36.96549 -35.71930 -34.20884 -33.95618 -32.51095 -31.98123 -30.89132 -28.67677 -28.30801 -26.36324 -26.12329 -24.62004 -23.95161 -23.70585 -22.16730 -21.51346 -21.01284 -19.74275 -18.91547 -17.76038 -17.75100 -17.07493 -16.98027 -16.86080 -16.31040 -16.10676 -15.63269 -15.44591 -15.32910 -15.09570 -14.86366 -14.71944 -14.56060 -14.27300 -14.09737 -13.85812 -13.74859 -13.45459 -13.20765 -13.10882 -13.03290 -12.94650 -12.77498 -12.61239 -12.59185 -12.38182 -12.22617 -11.96363 -11.94493 -11.83076 -11.70927 -11.64276 -11.57126 -11.52147 -11.23916 -11.04160 -10.73622 -10.53796 -10.28782 -9.96618 -9.01643 -8.11752 -5.38170 1.29331 1.38909 1.44542 1.68405 2.12898 2.43156 3.01121 3.09558 3.28771 3.54379 3.63773 3.69620 3.72444 3.78050 4.08382 4.12384 4.14368 4.17406 4.22030 4.25388 4.33860 4.38900 4.41893 4.45035 4.58852 4.64650 4.65780 4.72522 4.77838 4.81554 4.81642 4.88463 4.90457 4.91736 4.93601 4.98529 5.04168 5.06740 5.11413 5.12937 5.15440 5.18782 5.25152 5.29267 5.38114 5.45276 5.54183 5.62072 5.68438 5.78701 6.16835 6.30712 6.60466 6.78915 7.30782 7.57904 8.13120 9.07604 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.002812 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.974679 B = 9953.504035 C =10556.800155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.157 3.843 4 H 0.059 0.941 5 C 0.150 3.850 6 H 0.084 0.916 7 N -0.704 5.704 8 C 0.521 3.479 9 O -0.573 6.573 10 C -0.067 4.067 11 C -0.143 4.143 12 C -0.145 4.145 13 C -0.060 4.060 14 C -0.159 4.159 15 C 0.063 3.937 16 O -0.403 6.403 17 C 0.053 3.947 18 C -0.147 4.147 19 C -0.126 4.126 20 C 0.101 3.899 21 N -0.615 5.615 22 C -0.199 4.199 23 H 0.079 0.921 24 C -0.038 4.038 25 N -0.959 5.959 26 Si 0.933 3.067 27 H -0.278 1.278 28 H -0.316 1.316 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.412 0.588 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.095 0.905 47 H 0.049 0.951 48 H 0.110 0.890 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.077 0.923 53 H 0.045 0.955 54 H 0.020 0.980 55 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.361 -4.242 -20.003 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.051 3.949 4 H 0.076 0.924 5 C 0.043 3.957 6 H 0.102 0.898 7 N -0.355 5.355 8 C 0.309 3.691 9 O -0.452 6.452 10 C -0.070 4.070 11 C -0.200 4.200 12 C -0.202 4.202 13 C -0.079 4.079 14 C -0.196 4.196 15 C -0.014 4.014 16 O -0.323 6.323 17 C -0.023 4.023 18 C -0.184 4.184 19 C -0.165 4.165 20 C -0.024 4.024 21 N -0.341 5.341 22 C -0.327 4.327 23 H 0.097 0.903 24 C -0.232 4.232 25 N -0.607 5.607 26 Si 0.764 3.236 27 H -0.204 1.204 28 H -0.245 1.245 29 H -0.197 1.197 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.249 0.751 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.068 0.932 48 H 0.128 0.872 49 H 0.114 0.886 50 H 0.100 0.900 51 H 0.103 0.897 52 H 0.096 0.904 53 H 0.063 0.937 54 H 0.037 0.963 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.804 -4.478 -19.336 28.038 hybrid contribution -0.567 -0.174 1.562 1.671 sum 19.237 -4.652 -17.774 26.601 Atomic orbital electron populations 1.21858 0.95961 1.00200 1.02478 1.21848 0.96564 0.96864 1.00647 1.21320 0.91062 0.92305 0.90198 0.92357 1.21688 0.92521 0.98159 0.83286 0.89813 1.45877 1.16825 1.59141 1.13650 1.21147 0.80668 0.76895 0.90362 1.90618 1.59263 1.43242 1.52093 1.20773 0.96247 0.98971 0.90987 1.21955 0.99166 1.00220 0.98639 1.22017 1.03127 0.91526 1.03521 1.20924 0.92069 0.99274 0.95656 1.22440 0.95452 1.00679 1.01069 1.22569 0.95148 0.99786 0.83851 1.87888 1.54820 1.73861 1.15707 1.22767 0.91279 0.96082 0.92162 1.22367 0.96490 1.03387 0.96181 1.23016 0.97241 0.99268 0.97009 1.22041 0.87948 0.97557 0.94883 1.44886 1.01020 1.64744 1.23416 1.18568 0.82821 1.38399 0.92948 0.90319 1.25476 0.97301 1.01423 0.99001 1.69895 1.25182 1.46172 1.19473 0.86195 0.78487 0.79168 0.79743 1.20447 1.24470 1.19726 0.92729 0.93458 0.93081 0.90708 0.94174 0.75100 0.91027 0.88901 0.92774 0.92837 0.89164 0.91144 0.92122 0.91239 0.90652 0.93590 0.88725 0.93234 0.87245 0.88568 0.89976 0.89746 0.90435 0.93678 0.96262 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 8.64 71.98 0.62 -4.75 16 2 C -0.12 -4.03 5.51 30.60 0.17 -3.86 16 3 C 0.16 5.45 3.06 45.34 0.14 5.59 16 4 H 0.06 1.91 7.72 -2.39 -0.02 1.89 16 5 C 0.15 4.52 2.84 46.18 0.13 4.65 16 6 H 0.08 2.82 7.26 -2.39 -0.02 2.81 16 7 N -0.70 -15.97 4.96 -436.93 -2.17 -18.14 16 8 C 0.52 12.13 6.20 87.66 0.54 12.67 16 9 O -0.57 -17.73 13.35 -3.01 -0.04 -17.77 16 10 C -0.07 -1.03 0.43 -52.92 -0.02 -1.06 16 11 C -0.14 -1.61 8.02 71.98 0.58 -1.03 16 12 C -0.14 -1.83 7.67 71.98 0.55 -1.28 16 13 C -0.06 -1.00 1.27 -10.67 -0.01 -1.02 16 14 C -0.16 -3.16 4.77 30.68 0.15 -3.01 16 15 C 0.06 1.19 6.84 72.01 0.49 1.68 16 16 O -0.40 -7.80 10.77 -148.98 -1.60 -9.40 16 17 C 0.05 0.71 6.84 72.01 0.49 1.20 16 18 C -0.15 -1.68 4.70 30.68 0.14 -1.53 16 19 C -0.13 -4.07 6.77 31.99 0.22 -3.86 16 20 C 0.10 4.21 4.69 86.85 0.41 4.62 16 21 N -0.61 -27.38 2.94 -668.23 -1.96 -29.35 16 22 C -0.20 -10.60 7.78 84.03 0.65 -9.95 16 23 H 0.08 4.46 6.97 -2.91 -0.02 4.44 16 24 C -0.04 -2.20 5.46 84.86 0.46 -1.74 16 25 N -0.96 -59.38 13.97 21.65 0.30 -59.08 16 26 Si 0.93 47.20 24.25 68.60 1.66 48.86 16 27 H -0.28 -13.46 6.56 99.48 0.65 -12.81 16 28 H -0.32 -16.40 7.11 99.48 0.71 -15.70 16 29 H -0.27 -13.41 6.37 99.48 0.63 -12.78 16 30 H 0.05 2.46 5.39 -2.39 -0.01 2.45 16 31 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 7.34 7.21 -92.71 -0.67 6.67 16 36 H 0.07 0.71 7.56 -2.39 -0.02 0.69 16 37 H 0.09 0.65 6.51 -2.38 -0.02 0.63 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.82 6.36 -2.39 -0.02 0.81 16 40 H 0.09 0.81 6.37 -2.39 -0.02 0.79 16 41 H 0.07 0.78 7.56 -2.39 -0.02 0.77 16 42 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 43 H 0.07 1.33 6.27 -2.39 -0.01 1.32 16 44 H 0.08 1.92 5.65 -2.39 -0.01 1.91 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.10 0.72 6.62 -2.39 -0.02 0.71 16 50 H 0.08 0.88 6.28 -2.38 -0.01 0.87 16 51 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 53 H 0.04 2.03 6.55 -2.39 -0.02 2.01 16 54 H 0.02 0.87 5.37 -2.39 -0.01 0.86 16 55 H 0.26 15.47 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -68.89 393.36 1.99 -66.91 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.08 Total: 20.63 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.71 Total: -2.66 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.83 Total: -106.56 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.64 Total: -27.17 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.66 Total: 48.86 kcal Total: -68.89 1.99 -66.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087649098.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.409 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds