Wall clock time and date at job start Tue Mar 31 2020 22:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47506 * 2 1 4 4 H 1.09001 * 109.87638 * 55.52030 * 3 2 1 5 5 C 1.54329 * 109.88227 * 294.50255 * 3 2 1 6 6 H 1.08999 * 110.71956 * 336.92863 * 5 3 2 7 7 N 1.46507 * 110.71728 * 100.02238 * 5 3 2 8 8 C 1.34768 * 120.00029 * 204.99829 * 7 5 3 9 9 O 1.21288 * 120.00026 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00413 * 180.02562 * 8 7 5 11 11 C 1.52996 * 109.47508 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.48260 * 55.00037 * 11 10 8 13 13 C 1.53100 * 109.48009 * 175.02171 * 11 10 8 14 14 C 1.53185 * 109.16109 * 177.57751 * 13 11 10 15 15 C 1.53175 * 109.04597 * 303.04191 * 14 13 11 16 16 C 1.53005 * 109.51873 * 297.06579 * 15 14 13 17 17 C 1.52996 * 109.57347 * 176.91323 * 15 14 13 18 18 C 1.53093 * 109.16559 * 56.97006 * 15 14 13 19 19 O 1.42895 * 109.48172 * 294.97794 * 11 10 8 20 20 C 1.55157 * 102.94449 * 218.38502 * 5 3 2 21 21 C 1.54912 * 101.57944 * 35.50322 * 20 5 3 22 22 N 1.47022 * 109.88629 * 176.53593 * 3 2 1 23 23 C 1.36937 * 125.64797 * 298.31511 * 22 3 2 24 24 H 1.08002 * 119.99905 * 346.82636 * 23 22 3 25 25 C 1.38817 * 119.99865 * 166.83495 * 23 22 3 26 26 N 1.31620 * 120.00080 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99555 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47585 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47095 * 119.99786 * 27 25 23 30 30 H 1.48506 * 109.46840 * 239.99236 * 27 25 23 31 31 H 1.08994 * 109.46985 * 65.63389 * 1 2 3 32 32 H 1.09007 * 109.47178 * 185.63272 * 1 2 3 33 33 H 1.09000 * 109.46958 * 305.63112 * 1 2 3 34 34 H 1.08999 * 109.47369 * 120.00193 * 2 1 3 35 35 H 1.09009 * 109.47156 * 239.99815 * 2 1 3 36 36 H 0.96998 * 119.99925 * 25.00321 * 7 5 3 37 37 H 1.09002 * 109.47001 * 300.00558 * 10 8 7 38 38 H 1.08999 * 109.47091 * 60.00225 * 10 8 7 39 39 H 1.08993 * 109.52307 * 297.49722 * 13 11 10 40 40 H 1.09001 * 109.51810 * 57.68929 * 13 11 10 41 41 H 1.08992 * 109.54337 * 183.16413 * 14 13 11 42 42 H 1.09004 * 109.60131 * 62.95059 * 14 13 11 43 43 H 1.09007 * 109.46822 * 179.69114 * 16 15 14 44 44 H 1.08998 * 109.47112 * 299.68752 * 16 15 14 45 45 H 1.08991 * 109.47294 * 59.69068 * 16 15 14 46 46 H 1.09008 * 109.47239 * 300.27862 * 17 15 14 47 47 H 1.08997 * 109.47274 * 60.27708 * 17 15 14 48 48 H 1.08997 * 109.47452 * 180.28348 * 17 15 14 49 49 H 1.08999 * 109.47855 * 182.40949 * 18 15 14 50 50 H 1.09005 * 109.47862 * 62.37801 * 18 15 14 51 51 H 1.09001 * 111.00038 * 153.57326 * 20 5 3 52 52 H 1.08999 * 111.00460 * 277.38944 * 20 5 3 53 53 H 1.08998 * 110.36695 * 81.82530 * 21 20 5 54 54 H 1.08994 * 110.36850 * 204.03924 * 21 20 5 55 55 H 0.96994 * 119.99796 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6165 1.9853 0.8450 5 6 1.6476 2.1379 -1.3206 6 1 1.4734 1.4030 -2.1065 7 7 0.4646 2.9811 -1.1306 8 6 -0.3346 3.2665 -2.1776 9 8 -0.0747 2.8251 -3.2770 10 6 -1.5511 4.1343 -1.9824 11 6 -2.2785 4.3007 -3.3180 12 1 -2.5072 3.3188 -3.7323 13 6 -3.5794 5.0774 -3.0976 14 6 -4.2715 5.2924 -4.4472 15 6 -3.3109 6.0225 -5.3908 16 6 -2.9876 7.4054 -4.8215 17 6 -3.9617 6.1755 -6.7670 18 6 -2.0206 5.2091 -5.5225 19 8 -1.4444 5.0196 -4.2287 20 6 2.8939 3.0048 -1.6406 21 6 4.0425 2.0969 -1.1345 22 7 3.5078 1.4538 0.0835 23 6 4.2523 0.9520 1.1176 24 1 3.7750 0.6958 2.0519 25 6 5.6203 0.7729 0.9649 26 7 6.2019 1.0848 -0.1739 27 14 6.6356 0.0877 2.3752 28 1 5.7510 -0.1811 3.5373 29 1 7.2887 -1.1754 1.9471 30 1 7.6747 1.0755 2.7627 31 1 -0.3633 0.4240 -0.9361 32 1 -0.3634 -1.0228 0.1009 33 1 -0.3633 0.5987 0.8353 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 0.2566 3.3339 -0.2514 37 1 -2.2199 3.6653 -1.2607 38 1 -1.2441 5.1121 -1.6112 39 1 -4.2354 4.5094 -2.4380 40 1 -3.3546 6.0435 -2.6457 41 1 -5.1696 5.8931 -4.3047 42 1 -4.5422 4.3280 -4.8770 43 1 -2.2997 7.9221 -5.4909 44 1 -3.9068 7.9838 -4.7281 45 1 -2.5261 7.2957 -3.8403 46 1 -4.1937 5.1899 -7.1708 47 1 -4.8802 6.7546 -6.6722 48 1 -3.2749 6.6907 -7.4385 49 1 -1.3165 5.7450 -6.1591 50 1 -2.2461 4.2391 -5.9657 51 1 2.9806 3.1836 -2.7124 52 1 2.8673 3.9454 -1.0905 53 1 4.2904 1.3454 -1.8840 54 1 4.9210 2.6953 -0.8934 55 1 7.1578 0.9600 -0.2805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087662807.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:22 Heat of formation + Delta-G solvation = -103.495818 kcal Electronic energy + Delta-G solvation = -31070.923320 eV Core-core repulsion = 27106.617719 eV Total energy + Delta-G solvation = -3964.305601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.29324 -40.54637 -39.14726 -36.23981 -35.52087 -34.30582 -34.06096 -33.43414 -31.16436 -30.28155 -28.15371 -28.08450 -26.95039 -26.34123 -25.10996 -23.62943 -22.62059 -22.09848 -21.48273 -20.85092 -19.77886 -18.75151 -17.85994 -17.39161 -17.36220 -16.76361 -16.52034 -15.92201 -15.87289 -15.69712 -15.55165 -15.33932 -15.06989 -14.78331 -14.46321 -14.35385 -13.91838 -13.76307 -13.54327 -13.48908 -13.23771 -13.02319 -12.94568 -12.88358 -12.80556 -12.73675 -12.70389 -12.55149 -12.41096 -12.20340 -12.00491 -11.95882 -11.90886 -11.87573 -11.72852 -11.55608 -11.35107 -11.32042 -11.07428 -10.74590 -10.65605 -10.16213 -9.88293 -8.83898 -7.84569 -5.22586 1.46900 1.47816 1.58023 1.81664 2.23582 2.52561 2.92104 3.34947 3.56873 3.70910 3.81922 3.83054 3.86980 3.87479 3.94410 4.08225 4.20332 4.22847 4.33291 4.39203 4.42209 4.44630 4.59687 4.62566 4.66177 4.67185 4.71378 4.75259 4.77473 4.83088 4.85587 4.92262 4.92676 4.98887 5.03035 5.05876 5.10103 5.16224 5.19047 5.20595 5.27310 5.33610 5.34627 5.42619 5.47442 5.51527 5.57346 5.57613 5.71052 5.72961 6.23297 6.42531 6.72333 7.08587 7.43842 7.76769 8.44616 9.26800 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.002244 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.626644 B =12474.431461 C =13010.052836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.055 0.945 5 C 0.159 3.841 6 H 0.072 0.928 7 N -0.706 5.706 8 C 0.511 3.489 9 O -0.579 6.579 10 C -0.127 4.127 11 C 0.102 3.898 12 H 0.044 0.956 13 C -0.145 4.145 14 C -0.110 4.110 15 C -0.099 4.099 16 C -0.133 4.133 17 C -0.138 4.138 18 C 0.070 3.930 19 O -0.389 6.389 20 C -0.141 4.141 21 C 0.181 3.819 22 N -0.614 5.614 23 C -0.228 4.228 24 H 0.085 0.915 25 C -0.067 4.067 26 N -0.952 5.952 27 Si 0.976 3.024 28 H -0.262 1.262 29 H -0.296 1.296 30 H -0.293 1.293 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.413 0.587 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.085 0.915 50 H 0.038 0.962 51 H 0.059 0.941 52 H 0.073 0.927 53 H -0.010 1.010 54 H 0.043 0.957 55 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.284 11.349 -5.488 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.072 0.928 5 C 0.053 3.947 6 H 0.090 0.910 7 N -0.358 5.358 8 C 0.299 3.701 9 O -0.458 6.458 10 C -0.166 4.166 11 C 0.044 3.956 12 H 0.062 0.938 13 C -0.182 4.182 14 C -0.148 4.148 15 C -0.100 4.100 16 C -0.191 4.191 17 C -0.195 4.195 18 C -0.007 4.007 19 O -0.309 6.309 20 C -0.181 4.181 21 C 0.055 3.945 22 N -0.339 5.339 23 C -0.357 4.357 24 H 0.103 0.897 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.805 3.195 28 H -0.186 1.186 29 H -0.224 1.224 30 H -0.220 1.220 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.250 0.750 37 H 0.160 0.840 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.056 0.944 51 H 0.078 0.922 52 H 0.091 0.909 53 H 0.008 0.992 54 H 0.061 0.939 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.724 11.057 -6.151 28.667 hybrid contribution 1.296 -0.694 0.437 1.534 sum -24.428 10.363 -5.714 27.143 Atomic orbital electron populations 1.21635 0.93631 1.01908 1.01802 1.21906 0.96697 0.97675 1.00352 1.21277 0.84313 0.94552 0.94729 0.92777 1.21542 0.84379 0.91922 0.96887 0.91009 1.45872 1.25727 1.51738 1.12479 1.21237 0.84867 0.80469 0.83551 1.90701 1.74453 1.54274 1.26331 1.21835 0.94633 1.01444 0.98704 1.21865 0.90325 0.94389 0.89007 0.93806 1.22240 0.95670 1.01792 0.98511 1.21662 0.98113 1.00440 0.94539 1.21199 0.95333 0.96464 0.96984 1.21782 1.01497 0.94800 1.00985 1.21776 1.00900 1.02007 0.94828 1.22644 0.95111 0.98287 0.84641 1.87948 1.43878 1.76078 1.22964 1.23205 0.96021 0.98760 1.00080 1.21189 0.93969 0.92338 0.86972 1.44783 1.00715 1.68665 1.19701 1.19366 0.89939 1.34360 0.92013 0.89749 1.25730 0.98470 1.02310 0.99528 1.70157 1.09541 1.54685 1.25684 0.85041 0.78558 0.77067 0.78864 1.18586 1.22383 1.22049 0.93343 0.92355 0.91176 0.93222 0.94987 0.74965 0.83971 0.86449 0.88791 0.90030 0.89868 0.92129 0.93221 0.91608 0.92655 0.92659 0.91218 0.92445 0.89683 0.94381 0.92184 0.90869 0.99205 0.93880 0.94458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.59 71.98 0.69 -2.85 16 2 C -0.13 -4.66 5.41 30.59 0.17 -4.49 16 3 C 0.16 6.17 2.93 45.34 0.13 6.31 16 4 H 0.05 1.94 7.71 -2.39 -0.02 1.92 16 5 C 0.16 5.74 2.03 46.18 0.09 5.83 16 6 H 0.07 2.94 7.19 -2.39 -0.02 2.93 16 7 N -0.71 -18.74 4.92 -436.90 -2.15 -20.89 16 8 C 0.51 13.98 7.71 87.66 0.68 14.65 16 9 O -0.58 -21.70 15.07 10.71 0.16 -21.54 16 10 C -0.13 -2.15 5.41 29.85 0.16 -1.98 16 11 C 0.10 1.99 2.19 30.63 0.07 2.06 16 12 H 0.04 1.02 7.96 -2.39 -0.02 1.00 16 13 C -0.14 -1.77 5.06 30.69 0.16 -1.62 16 14 C -0.11 -1.34 4.81 30.71 0.15 -1.19 16 15 C -0.10 -1.42 0.78 -52.09 -0.04 -1.47 16 16 C -0.13 -1.84 8.08 71.98 0.58 -1.25 16 17 C -0.14 -1.60 8.49 71.98 0.61 -0.98 16 18 C 0.07 1.45 5.54 72.01 0.40 1.84 16 19 O -0.39 -9.85 9.06 -135.21 -1.23 -11.07 16 20 C -0.14 -5.75 6.77 31.99 0.22 -5.54 16 21 C 0.18 9.31 5.46 86.79 0.47 9.78 16 22 N -0.61 -31.07 3.14 -667.44 -2.09 -33.16 16 23 C -0.23 -12.48 9.75 84.03 0.82 -11.66 16 24 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 25 C -0.07 -3.84 5.47 84.86 0.46 -3.37 16 26 N -0.95 -58.08 10.54 21.65 0.23 -57.85 16 27 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 28 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 30 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 31 H 0.05 1.31 7.42 -2.39 -0.02 1.30 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.95 7.89 -2.39 -0.02 1.93 16 35 H 0.03 1.31 8.06 -2.38 -0.02 1.29 16 36 H 0.41 8.24 8.37 -92.71 -0.78 7.46 16 37 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.93 6.62 -2.39 -0.02 0.92 16 41 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.87 6.13 -2.39 -0.01 0.85 16 46 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 53 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 54 H 0.04 2.47 6.83 -2.39 -0.02 2.45 16 55 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -73.71 417.77 2.83 -70.88 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.06 Total: 21.80 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.81 Total: 4.06 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -4.02 Total: -111.90 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.06 Total: -32.62 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.71 2.83 -70.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087662807.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.614 kcal (2) G-P(sol) polarization free energy of solvation -73.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds