Wall clock time and date at job start Tue Mar 31 2020 23:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.08998 * 109.47135 * 305.00213 * 3 2 1 5 5 C 1.53002 * 109.47051 * 65.00148 * 3 2 1 6 6 C 1.50693 * 109.47148 * 185.00155 * 3 2 1 7 7 O 1.21283 * 120.00327 * 334.74452 * 6 3 2 8 8 N 1.34782 * 119.99886 * 154.74560 * 6 3 2 9 9 C 1.46922 * 120.63030 * 4.94058 * 8 6 3 10 10 C 1.53629 * 108.54435 * 126.36876 * 9 8 6 11 11 C 1.53040 * 109.23954 * 54.85575 * 10 9 8 12 12 C 1.52997 * 109.46042 * 178.49369 * 11 10 9 13 13 O 1.42910 * 109.46758 * 295.06852 * 12 11 10 14 14 C 1.42897 * 113.99657 * 180.02562 * 13 12 11 15 15 H 1.08994 * 110.64478 * 333.13563 * 14 13 12 16 16 C 1.55156 * 110.71687 * 209.99740 * 14 13 12 17 17 C 1.54914 * 101.58253 * 206.13620 * 16 14 13 18 18 N 1.47418 * 104.83171 * 37.00666 * 17 16 14 19 19 C 1.36943 * 125.64432 * 155.83689 * 18 17 16 20 20 H 1.08004 * 119.99717 * 180.02562 * 19 18 17 21 21 C 1.38803 * 120.00426 * 0.02562 * 19 18 17 22 22 N 1.31622 * 119.99779 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46881 * 60.00344 * 23 21 19 25 25 H 1.48500 * 109.47053 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47035 * 300.00426 * 23 21 19 27 27 C 1.47016 * 108.70649 * 335.87539 * 18 17 16 28 28 C 1.53036 * 109.53862 * 298.51258 * 11 10 9 29 29 C 1.46931 * 120.63086 * 185.21897 * 8 6 3 30 30 H 1.09001 * 109.46740 * 299.99734 * 1 2 3 31 31 H 1.09005 * 109.47292 * 59.99789 * 1 2 3 32 32 H 1.08997 * 109.46890 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46740 * 240.00266 * 2 1 3 34 34 H 1.08991 * 109.47453 * 120.00279 * 2 1 3 35 35 H 1.08994 * 109.47133 * 174.88110 * 5 3 2 36 36 H 1.08998 * 109.46757 * 54.87843 * 5 3 2 37 37 H 1.09000 * 109.46885 * 294.88112 * 5 3 2 38 38 H 1.09006 * 109.58658 * 246.20021 * 9 8 6 39 39 H 1.08999 * 109.58600 * 6.62692 * 9 8 6 40 40 H 1.08995 * 109.63371 * 294.86601 * 10 9 8 41 41 H 1.09000 * 109.45696 * 174.73761 * 10 9 8 42 42 H 1.08999 * 109.46460 * 58.53044 * 11 10 9 43 43 H 1.08998 * 109.47418 * 55.06261 * 12 11 10 44 44 H 1.09003 * 109.47652 * 175.07099 * 12 11 10 45 45 H 1.08998 * 111.00937 * 324.20634 * 16 14 13 46 46 H 1.09000 * 111.00550 * 88.06360 * 16 14 13 47 47 H 1.08998 * 110.37016 * 155.85069 * 17 16 14 48 48 H 1.09000 * 110.36416 * 278.16800 * 17 16 14 49 49 H 0.97001 * 120.00356 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.88569 * 241.64083 * 27 18 17 51 51 H 1.08997 * 109.88414 * 120.47467 * 27 18 17 52 52 H 1.09003 * 109.49718 * 301.41622 * 28 11 10 53 53 H 1.09001 * 109.52719 * 181.33638 * 28 11 10 54 54 H 1.09002 * 109.58323 * 353.37573 * 29 8 6 55 55 H 1.09003 * 109.58591 * 113.79618 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1820 0.4825 0.2451 8 7 4.1738 2.5148 -0.6447 9 6 3.4244 3.7288 -0.9959 10 6 4.0830 4.9286 -0.2981 11 6 5.5667 4.9765 -0.6705 12 6 6.2194 6.1914 -0.0082 13 8 5.6541 7.3884 -0.5466 14 6 6.1980 8.5882 0.0073 15 1 6.5690 8.4116 1.0169 16 6 5.1407 9.7237 0.0019 17 6 6.0391 10.9850 -0.0408 18 7 7.1696 10.6138 -0.9110 19 6 7.9549 11.4870 -1.6153 20 1 8.7623 11.1137 -2.2278 21 6 7.7131 12.8519 -1.5422 22 7 6.7293 13.3068 -0.7954 23 14 8.7846 14.0431 -2.5025 24 1 8.6864 13.7387 -3.9525 25 1 8.3236 15.4330 -2.2556 26 1 10.1960 13.9047 -2.0621 27 6 7.3140 9.1508 -0.8981 28 6 6.2573 3.6995 -0.1864 29 6 5.6243 2.4878 -0.8776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0751 3.1230 1.3474 36 1 1.9931 1.5372 2.1516 37 1 0.5493 2.2066 1.3545 38 1 3.4477 3.8729 -2.0762 39 1 2.3920 3.6307 -0.6604 40 1 3.9822 4.8246 0.7822 41 1 3.5968 5.8488 -0.6220 42 1 5.6671 5.0555 -1.7529 43 1 6.0428 6.1578 1.0669 44 1 7.2922 6.1777 -0.2008 45 1 4.5082 9.6645 -0.8839 46 1 4.5399 9.7026 0.9111 47 1 5.4923 11.8260 -0.4672 48 1 6.3952 11.2311 0.9596 49 1 6.5605 14.2607 -0.7439 50 1 8.2899 8.8780 -0.4965 51 1 7.2041 8.7585 -1.9091 52 1 6.1360 3.6070 0.8929 53 1 7.3186 3.7443 -0.4306 54 1 6.0437 1.5707 -0.4641 55 1 5.8233 2.5327 -1.9484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088228866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:51 Heat of formation + Delta-G solvation = -93.903684 kcal Electronic energy + Delta-G solvation = -30099.997064 eV Core-core repulsion = 26136.107409 eV Total energy + Delta-G solvation = -3963.889655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.47566 -40.00322 -38.82351 -37.33365 -36.44778 -34.65689 -33.86327 -32.18590 -31.10113 -30.52838 -29.08496 -28.20543 -26.42168 -26.04782 -24.35781 -24.19414 -22.39060 -22.04078 -21.80913 -21.07121 -19.63408 -18.97342 -18.33486 -17.85985 -17.02292 -16.76776 -16.54997 -16.19578 -16.09253 -15.84957 -15.48327 -15.28937 -15.11796 -14.71133 -14.58915 -14.28506 -14.09417 -14.02690 -13.86454 -13.56480 -13.49730 -13.22702 -13.01657 -13.00675 -12.94588 -12.65160 -12.58277 -12.51428 -12.40930 -12.23789 -12.19074 -12.05746 -11.81603 -11.73248 -11.63848 -11.61971 -11.52835 -11.42884 -11.27076 -10.75438 -10.63222 -10.41318 -9.67256 -8.91430 -7.78592 -5.23937 1.46693 1.50105 1.56609 1.58841 1.99906 2.46815 2.66991 3.31543 3.45746 3.70992 3.72137 3.77752 3.83610 3.88369 3.95418 4.01124 4.10132 4.12656 4.19511 4.26031 4.35367 4.43266 4.45708 4.51021 4.55380 4.60597 4.66076 4.68880 4.71415 4.76953 4.79200 4.85844 4.87786 4.92954 4.98085 4.99871 5.02399 5.03465 5.06382 5.07487 5.14165 5.18889 5.24785 5.35934 5.43113 5.44388 5.48175 5.58558 5.61398 5.78170 6.28063 6.37914 6.39792 7.09112 7.14765 7.75636 8.39031 9.23107 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.001811 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.081788 B =15456.608981 C =15985.862448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.108 4.108 4 H 0.115 0.885 5 C -0.141 4.141 6 C 0.513 3.487 7 O -0.589 6.589 8 N -0.611 5.611 9 C 0.104 3.896 10 C -0.122 4.122 11 C -0.079 4.079 12 C 0.061 3.939 13 O -0.380 6.380 14 C 0.095 3.905 15 H 0.079 0.921 16 C -0.124 4.124 17 C 0.153 3.847 18 N -0.625 5.625 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.066 4.066 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.115 3.885 28 C -0.118 4.118 29 C 0.111 3.889 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.077 0.923 48 H -0.006 1.006 49 H 0.249 0.751 50 H 0.022 0.978 51 H 0.026 0.974 52 H 0.063 0.937 53 H 0.087 0.913 54 H 0.077 0.923 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.461 -24.920 2.337 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.129 4.129 4 H 0.133 0.867 5 C -0.199 4.199 6 C 0.303 3.697 7 O -0.469 6.469 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.160 4.160 11 C -0.098 4.098 12 C -0.016 4.016 13 O -0.299 6.299 14 C 0.037 3.963 15 H 0.097 0.903 16 C -0.162 4.162 17 C 0.028 3.972 18 N -0.353 5.353 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.258 4.258 22 N -0.597 5.597 23 Si 0.811 3.189 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.011 4.011 28 C -0.157 4.157 29 C -0.012 4.012 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.126 0.874 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.012 0.988 49 H 0.059 0.941 50 H 0.040 0.960 51 H 0.044 0.956 52 H 0.082 0.918 53 H 0.105 0.895 54 H 0.096 0.904 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.238 -25.222 2.348 28.132 hybrid contribution 1.295 0.905 -0.196 1.592 sum -10.944 -24.317 2.152 26.753 Atomic orbital electron populations 1.21804 0.93431 1.02439 1.02889 1.21339 0.97129 0.93970 1.01849 1.21438 0.89601 0.99657 1.02157 0.86741 1.21821 1.03540 1.00108 0.94423 1.21327 0.91517 0.81408 0.75454 1.90652 1.69228 1.36316 1.50738 1.48304 1.08668 1.14994 1.62329 1.22103 0.96549 0.82408 1.00686 1.21945 0.94811 0.98424 1.00805 1.21069 0.95678 0.92051 1.01000 1.22718 0.97018 0.84388 0.97443 1.87883 1.63225 1.13236 1.65563 1.22898 0.93507 0.84598 0.95316 0.90319 1.22955 0.97150 0.93741 1.02372 1.21758 0.87865 0.95777 0.91805 1.44693 1.35753 1.01072 1.53743 1.19415 1.09238 0.87904 1.20736 0.90350 1.25661 1.00468 0.98323 1.01389 1.70020 1.32988 1.12615 1.44112 0.85090 0.77984 0.77554 0.78309 1.20292 1.21657 1.20449 1.21835 0.96756 0.84657 0.97871 1.21811 1.00441 0.92849 1.00564 1.21583 0.79899 0.98920 1.00768 0.91466 0.91614 0.92276 0.92925 0.92761 0.91686 0.93219 0.88986 0.90028 0.87374 0.91648 0.89831 0.90311 0.92703 0.93414 0.91583 0.89077 0.90456 0.98798 0.94140 0.95965 0.95613 0.91842 0.89488 0.90429 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 71.98 0.70 -0.59 16 2 C -0.10 -1.45 4.85 30.60 0.15 -1.30 16 3 C -0.11 -1.38 1.85 -11.54 -0.02 -1.40 16 4 H 0.11 0.96 6.73 -2.39 -0.02 0.95 16 5 C -0.14 -1.49 8.50 71.98 0.61 -0.88 16 6 C 0.51 10.13 6.80 87.65 0.60 10.73 16 7 O -0.59 -16.59 15.62 -3.04 -0.05 -16.64 16 8 N -0.61 -10.09 2.97 -818.05 -2.43 -12.52 16 9 C 0.10 1.26 5.95 86.51 0.51 1.77 16 10 C -0.12 -1.84 5.29 30.82 0.16 -1.68 16 11 C -0.08 -1.39 2.39 -10.77 -0.03 -1.41 16 12 C 0.06 1.35 5.15 71.98 0.37 1.72 16 13 O -0.38 -11.23 9.58 -148.98 -1.43 -12.65 16 14 C 0.10 3.28 3.45 31.78 0.11 3.39 16 15 H 0.08 2.46 7.82 -2.39 -0.02 2.44 16 16 C -0.12 -4.64 6.81 31.99 0.22 -4.42 16 17 C 0.15 7.58 5.89 86.86 0.51 8.09 16 18 N -0.63 -33.07 3.39 -692.00 -2.35 -35.42 16 19 C -0.24 -13.96 10.27 84.03 0.86 -13.09 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 22 N -0.95 -56.44 10.09 21.65 0.22 -56.22 16 23 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 C 0.11 4.90 7.02 86.73 0.61 5.51 16 28 C -0.12 -1.86 5.36 30.67 0.16 -1.69 16 29 C 0.11 1.86 6.44 86.36 0.56 2.42 16 30 H 0.07 0.48 6.68 -2.39 -0.02 0.46 16 31 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.94 8.03 -2.39 -0.02 0.92 16 35 H 0.06 0.66 7.20 -2.39 -0.02 0.64 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.60 6.82 -2.39 -0.02 0.58 16 38 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.11 0.88 4.89 -2.39 -0.01 0.87 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.41 7.79 -2.39 -0.02 1.39 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 1.12 8.11 -2.39 -0.02 1.10 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.08 4.35 5.87 -2.39 -0.01 4.34 16 48 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.02 0.93 8.14 -2.38 -0.02 0.92 16 51 H 0.03 1.13 8.06 -2.39 -0.02 1.11 16 52 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.08 1.57 7.00 -2.39 -0.02 1.55 16 55 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.25 416.95 3.38 -67.88 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.83 Total: 13.96 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.55 Total: 3.87 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -4.56 Total: -104.15 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.47 Total: -29.29 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.25 3.38 -67.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088228866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.027 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds