Wall clock time and date at job start Tue Mar 31 2020 23:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47048 * 304.99427 * 3 2 1 5 5 C 1.53003 * 109.47281 * 64.99425 * 3 2 1 6 6 C 1.50695 * 109.47264 * 184.99732 * 3 2 1 7 7 O 1.21277 * 120.00283 * 263.40806 * 6 3 2 8 8 N 1.34779 * 120.00311 * 83.40660 * 6 3 2 9 9 C 1.46926 * 120.62609 * 4.76838 * 8 6 3 10 10 C 1.52764 * 109.00909 * 233.58382 * 9 8 6 11 11 C 1.53046 * 109.37933 * 305.58925 * 10 9 8 12 12 C 1.53006 * 109.45653 * 181.25918 * 11 10 9 13 13 O 1.42900 * 109.47101 * 64.93392 * 12 11 10 14 14 C 1.42899 * 113.99827 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.88501 * 26.12143 * 14 13 12 16 16 C 1.55166 * 111.00261 * 149.99732 * 14 13 12 17 17 C 1.54328 * 102.93836 * 153.57715 * 16 14 13 18 18 N 1.47018 * 107.27437 * 337.80659 * 17 16 14 19 19 C 1.36932 * 125.65049 * 178.96157 * 18 17 16 20 20 H 1.08000 * 120.00180 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99775 * 359.97438 * 19 18 17 22 22 N 1.31624 * 120.00366 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47329 * 59.99022 * 23 21 19 25 25 H 1.48501 * 109.47346 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46816 * 299.99435 * 23 21 19 27 27 C 1.47430 * 108.70366 * 358.94233 * 18 17 16 28 28 C 1.53034 * 109.53972 * 61.23960 * 11 10 9 29 29 C 1.46927 * 120.63687 * 185.04434 * 8 6 3 30 30 H 1.08995 * 109.47247 * 300.00588 * 1 2 3 31 31 H 1.09007 * 109.46631 * 60.00421 * 1 2 3 32 32 H 1.09005 * 109.46814 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47726 * 239.99632 * 2 1 3 34 34 H 1.09003 * 109.47332 * 119.99599 * 2 1 3 35 35 H 1.09001 * 109.46854 * 53.91985 * 5 3 2 36 36 H 1.08994 * 109.47019 * 173.91505 * 5 3 2 37 37 H 1.08993 * 109.47079 * 293.91821 * 5 3 2 38 38 H 1.08998 * 109.59200 * 353.41741 * 9 8 6 39 39 H 1.09000 * 109.59131 * 113.84057 * 9 8 6 40 40 H 1.08998 * 109.56468 * 185.55706 * 10 9 8 41 41 H 1.09002 * 109.36203 * 65.49574 * 10 9 8 42 42 H 1.08998 * 109.45631 * 301.21473 * 11 10 9 43 43 H 1.09000 * 109.46356 * 184.92896 * 12 11 10 44 44 H 1.08998 * 109.47041 * 304.92806 * 12 11 10 45 45 H 1.09003 * 110.71845 * 271.94119 * 16 14 13 46 46 H 1.09001 * 110.71735 * 35.03510 * 16 14 13 47 47 H 1.09002 * 109.87872 * 97.22816 * 17 16 14 48 48 H 1.09001 * 109.87645 * 218.23422 * 17 16 14 49 49 H 0.96997 * 120.00210 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.36721 * 265.29040 * 27 18 17 51 51 H 1.08995 * 110.36521 * 142.96453 * 27 18 17 52 52 H 1.08997 * 109.49948 * 178.68544 * 28 11 10 53 53 H 1.08997 * 109.52645 * 58.59824 * 28 11 10 54 54 H 1.08995 * 109.58734 * 246.15759 * 29 8 6 55 55 H 1.08999 * 109.58126 * 6.58538 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1267 1.3073 6 6 3.5418 1.4444 -0.1238 7 8 4.2320 1.5354 0.8693 8 7 4.1181 1.3449 -1.3381 9 6 3.2984 1.3389 -2.5574 10 6 3.6523 0.1072 -3.3888 11 6 5.1610 0.0838 -3.6450 12 6 5.5132 -1.1323 -4.5042 13 8 4.9114 -0.9954 -5.7930 14 6 5.1803 -2.0842 -6.6786 15 1 5.3850 -2.9977 -6.1203 16 6 4.0096 -2.2923 -7.6755 17 6 4.7019 -2.9468 -8.8897 18 7 6.1288 -2.5999 -8.8180 19 6 7.0937 -3.0039 -9.7016 20 1 8.1185 -2.6934 -9.5613 21 6 6.7546 -3.8125 -10.7776 22 7 5.5057 -4.1914 -10.9484 23 14 8.0710 -4.3642 -11.9827 24 1 9.1078 -5.1442 -11.2604 25 1 7.4554 -5.2140 -13.0335 26 1 8.6964 -3.1733 -12.6120 27 6 6.3487 -1.7447 -7.6374 28 6 5.9055 -0.0018 -2.3107 29 6 5.5775 1.2344 -1.4674 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9780 1.5287 2.1516 36 1 2.0889 3.1165 1.3551 37 1 0.5501 2.2221 1.3465 38 1 2.2428 1.3051 -2.2880 39 1 3.5007 2.2388 -3.1382 40 1 3.1222 0.1446 -4.3405 41 1 3.3617 -0.7916 -2.8449 42 1 5.4547 0.9943 -4.1672 43 1 6.5957 -1.1984 -4.6137 44 1 5.1408 -2.0369 -4.0234 45 1 3.2581 -2.9599 -7.2539 46 1 3.5635 -1.3368 -7.9512 47 1 4.5808 -4.0292 -8.8464 48 1 4.2705 -2.5623 -9.8139 49 1 5.2688 -4.7567 -11.7002 50 1 6.3142 -0.6924 -7.9195 51 1 7.3042 -1.9819 -7.1698 52 1 6.9790 -0.0419 -2.4950 53 1 5.5941 -0.8995 -1.7767 54 1 5.9695 2.1256 -1.9575 55 1 6.0251 1.1316 -0.4789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088228869.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:06 Heat of formation + Delta-G solvation = -94.702095 kcal Electronic energy + Delta-G solvation = -30228.765455 eV Core-core repulsion = 26264.841179 eV Total energy + Delta-G solvation = -3963.924277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.48768 -39.98243 -38.82667 -37.33596 -36.52898 -34.61554 -33.83924 -32.13141 -31.09914 -30.54571 -29.14177 -28.26056 -26.47039 -26.05254 -24.32751 -24.02462 -22.38529 -22.04948 -21.86254 -21.14318 -19.61891 -18.96422 -18.45137 -17.85320 -16.95656 -16.71942 -16.49871 -16.17478 -16.07944 -15.88829 -15.51511 -15.29235 -15.03613 -14.81049 -14.41400 -14.29538 -14.14880 -13.92885 -13.80363 -13.68030 -13.60388 -13.27952 -13.06404 -13.03280 -12.92852 -12.68916 -12.66758 -12.43503 -12.32319 -12.19548 -12.14827 -12.07575 -11.82832 -11.76287 -11.63352 -11.57562 -11.54443 -11.42170 -11.33917 -10.71696 -10.62766 -10.38510 -9.67417 -8.93031 -7.86274 -5.23167 1.45806 1.49343 1.55712 1.57830 2.00908 2.45138 2.65963 3.32072 3.46369 3.71308 3.72560 3.79880 3.86250 3.87553 3.96044 3.99485 4.10324 4.11878 4.18957 4.24054 4.36159 4.44911 4.45491 4.48801 4.57108 4.59778 4.64688 4.69960 4.72326 4.76771 4.80976 4.87411 4.89304 4.94011 4.98370 5.01507 5.03367 5.05375 5.06333 5.10685 5.15319 5.19592 5.24746 5.34929 5.42691 5.43412 5.48822 5.58968 5.63460 5.73164 6.15846 6.37413 6.39995 7.08079 7.15201 7.74330 8.38596 9.23794 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.001889 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.112317 B =14815.539610 C =15583.041264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.108 4.108 4 H 0.116 0.884 5 C -0.132 4.132 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.610 5.610 9 C 0.104 3.896 10 C -0.122 4.122 11 C -0.079 4.079 12 C 0.062 3.938 13 O -0.378 6.378 14 C 0.094 3.906 15 H 0.073 0.927 16 C -0.125 4.125 17 C 0.185 3.815 18 N -0.627 5.627 19 C -0.246 4.246 20 H 0.082 0.918 21 C -0.067 4.067 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.277 1.277 27 C 0.116 3.884 28 C -0.119 4.119 29 C 0.112 3.888 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.017 0.983 48 H 0.010 0.990 49 H 0.248 0.752 50 H 0.023 0.977 51 H 0.042 0.958 52 H 0.087 0.913 53 H 0.063 0.937 54 H 0.078 0.922 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 11.867 23.205 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.129 4.129 4 H 0.134 0.866 5 C -0.189 4.189 6 C 0.302 3.698 7 O -0.469 6.469 8 N -0.342 5.342 9 C -0.017 4.017 10 C -0.161 4.161 11 C -0.097 4.097 12 C -0.015 4.015 13 O -0.297 6.297 14 C 0.035 3.965 15 H 0.091 0.909 16 C -0.163 4.163 17 C 0.060 3.940 18 N -0.354 5.354 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.010 4.010 28 C -0.157 4.157 29 C -0.011 4.011 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.035 0.965 48 H 0.028 0.972 49 H 0.058 0.942 50 H 0.041 0.959 51 H 0.060 0.940 52 H 0.105 0.895 53 H 0.082 0.918 54 H 0.096 0.904 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.605 11.968 23.497 28.064 hybrid contribution 1.133 -0.774 -0.991 1.693 sum -8.472 11.194 22.506 26.525 Atomic orbital electron populations 1.21798 0.93326 1.02552 1.02951 1.21458 0.97792 0.93217 1.02325 1.21466 0.89712 0.99788 1.01969 0.86594 1.21657 1.02288 0.99706 0.95270 1.21309 0.91839 0.74464 0.82140 1.90653 1.66250 1.51919 1.38071 1.48297 1.07616 1.71828 1.06466 1.21931 0.96284 0.98988 0.84539 1.21810 0.95372 0.98181 1.00689 1.21069 0.96413 0.97828 0.94417 1.22709 0.96987 0.98657 0.83139 1.87836 1.73863 1.43952 1.24000 1.23009 0.94793 0.89000 0.89701 0.90882 1.22817 0.97073 1.01340 0.95051 1.20915 0.82959 0.96318 0.93776 1.44663 1.05108 1.57890 1.27785 1.19419 0.89652 1.25016 1.03432 0.90018 1.25703 0.98831 1.00686 1.00739 1.70169 1.17464 1.40545 1.31768 0.85110 0.77957 0.77824 0.78168 1.20152 1.21878 1.20337 1.22042 0.97265 0.93743 0.87944 1.21821 1.01300 0.98038 0.94553 1.21569 0.80279 0.98413 1.00816 0.91792 0.91305 0.92157 0.91308 0.92765 0.93361 0.93329 0.89479 0.87424 0.90085 0.89662 0.91651 0.90148 0.93391 0.92906 0.89427 0.90754 0.96460 0.97204 0.94241 0.95882 0.94009 0.89452 0.91773 0.90410 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 71.98 0.70 -0.47 16 2 C -0.11 -1.25 5.21 30.59 0.16 -1.10 16 3 C -0.11 -1.38 1.87 -11.54 -0.02 -1.40 16 4 H 0.12 0.94 6.36 -2.39 -0.02 0.93 16 5 C -0.13 -1.73 8.20 71.98 0.59 -1.14 16 6 C 0.51 10.03 6.82 87.65 0.60 10.62 16 7 O -0.59 -16.48 15.63 -3.02 -0.05 -16.52 16 8 N -0.61 -9.88 2.98 -819.75 -2.44 -12.33 16 9 C 0.10 1.21 6.08 86.22 0.52 1.73 16 10 C -0.12 -1.75 5.26 30.53 0.16 -1.59 16 11 C -0.08 -1.31 2.39 -10.76 -0.03 -1.34 16 12 C 0.06 1.33 5.15 71.98 0.37 1.70 16 13 O -0.38 -10.76 9.66 -148.98 -1.44 -12.20 16 14 C 0.09 3.21 3.55 31.99 0.11 3.32 16 15 H 0.07 2.41 7.83 -2.39 -0.02 2.39 16 16 C -0.12 -4.58 6.69 31.79 0.21 -4.37 16 17 C 0.19 9.23 5.37 86.73 0.47 9.70 16 18 N -0.63 -32.87 3.39 -691.99 -2.35 -35.22 16 19 C -0.25 -14.00 10.28 84.03 0.86 -13.14 16 20 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 22 N -0.95 -57.35 10.31 21.65 0.22 -57.12 16 23 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C 0.12 4.85 6.97 86.85 0.61 5.45 16 28 C -0.12 -1.80 5.36 30.67 0.16 -1.63 16 29 C 0.11 1.84 6.42 86.36 0.55 2.40 16 30 H 0.06 0.45 6.70 -2.39 -0.02 0.43 16 31 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.07 0.78 7.79 -2.39 -0.02 0.76 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.79 8.07 -2.39 -0.02 0.77 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.72 6.87 -2.39 -0.02 0.70 16 38 H 0.11 0.83 5.19 -2.39 -0.01 0.82 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 1.35 7.79 -2.39 -0.02 1.33 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.05 1.08 8.12 -2.39 -0.02 1.06 16 45 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 46 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 47 H 0.02 0.95 7.38 -2.39 -0.02 0.93 16 48 H 0.01 0.54 7.51 -2.39 -0.02 0.53 16 49 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 55 H 0.08 1.53 7.04 -2.39 -0.02 1.52 16 Total: -1.00 -71.70 418.53 3.30 -68.40 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.83 Total: 11.76 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 6.50 Total: 5.41 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.57 Total: -104.67 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.49 Total: -28.72 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.70 3.30 -68.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088228869.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.298 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds