Wall clock time and date at job start Tue Mar 31 2020 22:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46981 * 2 1 4 4 H 1.09000 * 110.53981 * 53.18783 * 3 2 1 5 5 C 1.55134 * 110.52796 * 290.39944 * 3 2 1 6 6 C 1.54994 * 102.09638 * 220.40187 * 5 3 2 7 7 O 1.44376 * 103.49230 * 37.10492 * 6 5 3 8 8 C 1.43747 * 106.97317 * 319.94340 * 7 6 5 9 9 H 1.09000 * 109.87706 * 266.93572 * 8 7 6 10 10 C 1.50701 * 109.87928 * 145.93985 * 8 7 6 11 11 O 1.21284 * 119.99673 * 348.85461 * 10 8 7 12 12 N 1.34773 * 120.00074 * 168.85895 * 10 8 7 13 13 C 1.46504 * 119.99763 * 184.86526 * 12 10 8 14 14 C 1.52999 * 109.47052 * 84.32447 * 13 12 10 15 15 H 1.09001 * 109.58585 * 301.10659 * 14 13 12 16 16 C 1.53162 * 109.58837 * 180.67615 * 14 13 12 17 17 C 1.53054 * 109.32644 * 185.56707 * 16 14 13 18 18 C 1.53040 * 109.52481 * 61.37088 * 17 16 14 19 19 C 1.53003 * 109.49402 * 58.59416 * 18 17 16 20 20 C 1.53000 * 109.49506 * 178.65616 * 18 17 16 21 21 C 1.53190 * 109.31158 * 298.64357 * 18 17 16 22 22 N 1.46922 * 108.77913 * 54.64013 * 21 18 17 23 23 C 1.36932 * 120.63634 * 126.41444 * 22 21 18 24 24 H 1.08004 * 120.00121 * 213.41916 * 23 22 21 25 25 C 1.38810 * 120.00008 * 33.41203 * 23 22 21 26 26 N 1.31615 * 119.99984 * 8.34692 * 25 23 22 27 27 Si 1.86802 * 119.99951 * 188.35198 * 25 23 22 28 28 H 1.48501 * 109.47033 * 4.99864 * 27 25 23 29 29 H 1.48493 * 109.47283 * 125.00146 * 27 25 23 30 30 H 1.48502 * 109.46697 * 245.00061 * 27 25 23 31 31 H 1.09001 * 109.47157 * 65.06030 * 1 2 3 32 32 H 1.09002 * 109.46920 * 185.06000 * 1 2 3 33 33 H 1.09001 * 109.47307 * 305.05995 * 1 2 3 34 34 H 1.08999 * 109.47106 * 240.00281 * 2 1 3 35 35 H 1.09005 * 109.47024 * 120.00077 * 2 1 3 36 36 H 1.08999 * 110.83289 * 102.22735 * 5 3 2 37 37 H 1.09004 * 111.00477 * 338.64685 * 5 3 2 38 38 H 1.09005 * 110.61506 * 278.60305 * 6 5 3 39 39 H 1.08997 * 110.61899 * 155.60708 * 6 5 3 40 40 H 0.96995 * 120.00264 * 4.86327 * 12 10 8 41 41 H 1.08995 * 109.47327 * 324.32361 * 13 12 10 42 42 H 1.09005 * 109.46791 * 204.31634 * 13 12 10 43 43 H 1.09001 * 109.47969 * 65.62325 * 16 14 13 44 44 H 1.08993 * 109.50302 * 305.52841 * 16 14 13 45 45 H 1.09000 * 109.45558 * 301.36097 * 17 16 14 46 46 H 1.08996 * 109.45889 * 181.38810 * 17 16 14 47 47 H 1.08998 * 109.47441 * 60.00044 * 19 18 17 48 48 H 1.09004 * 109.46473 * 179.97438 * 19 18 17 49 49 H 1.09005 * 109.47393 * 299.99447 * 19 18 17 50 50 H 1.08997 * 109.46986 * 60.00565 * 20 18 17 51 51 H 1.08999 * 109.46841 * 180.02562 * 20 18 17 52 52 H 1.09000 * 109.46947 * 300.00118 * 20 18 17 53 53 H 1.09006 * 109.58262 * 174.42399 * 21 18 17 54 54 H 1.08999 * 109.58654 * 294.84594 * 21 18 17 55 55 H 0.97003 * 119.99762 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5908 2.0069 0.8172 5 6 1.7438 2.1242 -1.3617 6 6 3.0431 2.9320 -1.6099 7 8 4.0805 2.0657 -1.1023 8 6 3.5770 1.4711 0.1057 9 1 3.8783 2.0684 0.9662 10 6 4.1073 0.0674 0.2456 11 8 4.6750 -0.4620 -0.6863 12 7 3.9507 -0.5995 1.4063 13 6 4.5581 -1.9215 1.5791 14 6 6.0139 -1.7600 2.0209 15 1 6.5615 -1.1869 1.2727 16 6 6.6565 -3.1405 2.1862 17 6 8.0659 -2.9777 2.7604 18 6 7.9838 -2.3153 4.1376 19 6 7.1206 -3.1724 5.0657 20 6 9.3901 -2.1834 4.7254 21 6 7.3560 -0.9253 3.9946 22 7 6.0623 -1.0586 3.3111 23 6 4.9234 -0.5385 3.8656 24 1 3.9760 -1.0365 3.7203 25 6 4.9864 0.6286 4.6144 26 7 6.1030 1.3240 4.6565 27 14 3.4863 1.2120 5.5625 28 1 2.4055 0.1998 5.4507 29 1 3.8452 1.3973 6.9915 30 1 3.0159 2.5029 4.9989 31 1 -0.3633 0.4333 -0.9318 32 1 -0.3633 -1.0237 0.0906 33 1 -0.3634 0.5903 0.8412 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 0.8822 2.7873 -1.2840 37 1 1.5916 1.3819 -2.1453 38 1 3.0226 3.8712 -1.0569 39 1 3.1834 3.1156 -2.6751 40 1 3.4360 -0.2043 2.1271 41 1 4.5231 -2.4637 0.6343 42 1 4.0077 -2.4777 2.3380 43 1 6.7139 -3.6332 1.2156 44 1 6.0542 -3.7432 2.8658 45 1 8.6603 -2.3543 2.0925 46 1 8.5345 -3.9572 2.8558 47 1 7.5661 -4.1623 5.1649 48 1 7.0628 -2.7004 6.0466 49 1 6.1185 -3.2652 4.6471 50 1 10.0043 -1.5718 4.0645 51 1 9.3311 -1.7120 5.7064 52 1 9.8368 -3.1727 4.8244 53 1 7.2044 -0.4895 4.9821 54 1 8.0151 -0.2853 3.4079 55 1 6.1471 2.1394 5.1801 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089654103.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:28 Heat of formation + Delta-G solvation = -86.868959 kcal Electronic energy + Delta-G solvation = -32947.853184 eV Core-core repulsion = 28984.268578 eV Total energy + Delta-G solvation = -3963.584606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.67635 -40.29845 -39.17218 -36.55035 -35.76839 -34.87379 -33.65005 -31.71453 -31.30938 -30.61080 -28.49222 -27.99763 -27.36515 -25.48477 -24.43079 -23.88521 -23.43342 -22.15767 -21.52196 -20.79951 -19.46178 -18.41527 -18.15521 -17.64252 -17.28157 -16.73088 -16.23865 -15.90319 -15.72523 -15.58161 -15.47103 -15.33421 -15.11483 -14.75877 -14.61471 -14.43903 -14.28675 -13.80931 -13.70434 -13.50216 -13.04909 -12.93303 -12.92652 -12.85101 -12.60954 -12.56098 -12.54789 -12.39851 -12.29910 -12.20604 -12.10577 -12.07691 -11.77934 -11.64504 -11.60687 -11.54973 -11.26808 -11.10942 -11.04144 -10.88779 -10.47601 -10.39922 -9.66069 -8.43670 -7.72940 -5.25516 1.48074 1.53859 1.60664 1.65497 2.26963 2.55216 3.08445 3.39278 3.42720 3.64309 3.66518 3.75870 4.02026 4.02130 4.11798 4.19383 4.22163 4.27947 4.32591 4.42468 4.46865 4.52767 4.54047 4.56159 4.67745 4.72460 4.77353 4.79183 4.85916 4.87446 4.91489 4.96689 4.98117 5.05546 5.10020 5.13056 5.13394 5.13516 5.18522 5.24173 5.25955 5.40665 5.42766 5.48636 5.54521 5.59029 5.70410 5.72053 5.82240 5.83412 5.90037 6.50916 6.73912 7.24935 7.38933 7.95127 8.55675 9.32453 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.004418 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.981480 B = 6335.556295 C = 7256.943053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C -0.106 4.106 4 H 0.110 0.890 5 C -0.135 4.135 6 C 0.033 3.967 7 O -0.387 6.387 8 C 0.058 3.942 9 H 0.080 0.920 10 C 0.519 3.481 11 O -0.584 6.584 12 N -0.690 5.690 13 C 0.134 3.866 14 C 0.155 3.845 15 H -0.017 1.017 16 C -0.122 4.122 17 C -0.093 4.093 18 C -0.091 4.091 19 C -0.113 4.113 20 C -0.129 4.129 21 C 0.200 3.800 22 N -0.589 5.589 23 C -0.233 4.233 24 H 0.081 0.919 25 C -0.045 4.045 26 N -0.936 5.936 27 Si 0.945 3.055 28 H -0.251 1.251 29 H -0.306 1.306 30 H -0.292 1.292 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.410 0.590 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.032 0.968 49 H 0.055 0.945 50 H 0.040 0.960 51 H 0.044 0.956 52 H 0.071 0.929 53 H 0.054 0.946 54 H -0.031 1.031 55 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 -4.044 -5.645 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.125 4.125 4 H 0.129 0.871 5 C -0.173 4.173 6 C -0.043 4.043 7 O -0.306 6.306 8 C -0.004 4.004 9 H 0.098 0.902 10 C 0.306 3.694 11 O -0.464 6.464 12 N -0.342 5.342 13 C 0.009 3.991 14 C 0.048 3.952 15 H 0.000 1.000 16 C -0.162 4.162 17 C -0.131 4.131 18 C -0.093 4.093 19 C -0.170 4.170 20 C -0.187 4.187 21 C 0.074 3.926 22 N -0.312 5.312 23 C -0.363 4.363 24 H 0.098 0.902 25 C -0.240 4.240 26 N -0.582 5.582 27 Si 0.774 3.226 28 H -0.175 1.175 29 H -0.234 1.234 30 H -0.219 1.219 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.249 0.751 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.090 0.910 53 H 0.073 0.927 54 H -0.013 1.013 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.194 -4.313 -6.310 11.956 hybrid contribution -0.130 1.376 1.054 1.738 sum -9.323 -2.938 -5.256 11.099 Atomic orbital electron populations 1.21705 0.93035 1.02363 1.02697 1.21845 0.98244 0.94409 1.02141 1.22682 0.90324 0.98844 1.00641 0.87140 1.23258 0.98720 0.99716 0.95575 1.23916 0.86103 0.93361 1.00918 1.88957 1.40388 1.61649 1.39616 1.22803 0.96282 0.91661 0.89624 0.90247 1.20557 0.78428 0.87807 0.82582 1.90600 1.45008 1.69934 1.40906 1.46040 1.53231 1.19815 1.15147 1.21349 0.92962 0.83962 1.00793 1.20950 0.94871 0.92461 0.86951 0.99951 1.21930 0.96836 0.96707 1.00677 1.21396 0.96482 0.99899 0.95291 1.21140 0.95463 0.97188 0.95477 1.21583 0.99772 0.98097 0.97553 1.21718 0.95540 1.01606 0.99840 1.20508 0.84963 0.91174 0.95922 1.44131 1.04684 1.64762 1.17659 1.19353 0.88618 1.01991 1.26344 0.90210 1.25859 0.98674 0.96463 1.03008 1.70172 1.27648 1.16427 1.43982 0.85535 0.80805 0.78553 0.77735 1.17487 1.23388 1.21867 0.91692 0.92240 0.91605 0.93450 0.91266 0.86732 0.90464 0.90727 0.87413 0.75108 0.90866 0.88531 0.91582 0.90398 0.94806 0.90630 0.92078 0.94904 0.92641 0.94089 0.93667 0.91019 0.92750 1.01322 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.72 71.98 0.70 -1.75 16 2 C -0.13 -3.10 4.16 30.59 0.13 -2.97 16 3 C -0.11 -2.60 3.06 -9.69 -0.03 -2.63 16 4 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 5 C -0.14 -2.69 6.10 32.01 0.20 -2.50 16 6 C 0.03 0.79 7.72 72.66 0.56 1.35 16 7 O -0.39 -14.35 10.76 -130.50 -1.40 -15.75 16 8 C 0.06 2.01 3.84 30.22 0.12 2.13 16 9 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 10 C 0.52 20.97 5.29 87.66 0.46 21.44 16 11 O -0.58 -27.84 16.21 15.43 0.25 -27.59 16 12 N -0.69 -25.60 2.85 -463.05 -1.32 -26.92 16 13 C 0.13 4.81 4.78 86.38 0.41 5.22 16 14 C 0.15 6.43 3.14 44.96 0.14 6.58 16 15 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 16 C -0.12 -4.12 5.03 30.67 0.15 -3.97 16 17 C -0.09 -3.13 4.71 30.63 0.14 -2.99 16 18 C -0.09 -3.34 0.77 -52.10 -0.04 -3.38 16 19 C -0.11 -3.79 7.98 71.98 0.57 -3.21 16 20 C -0.13 -4.19 8.48 71.98 0.61 -3.58 16 21 C 0.20 9.57 3.91 86.36 0.34 9.90 16 22 N -0.59 -27.28 2.41 -675.28 -1.63 -28.91 16 23 C -0.23 -10.94 7.02 84.03 0.59 -10.35 16 24 H 0.08 3.43 5.46 -2.91 -0.02 3.41 16 25 C -0.04 -2.25 5.09 84.86 0.43 -1.82 16 26 N -0.94 -52.97 11.07 21.65 0.24 -52.73 16 27 Si 0.94 40.11 29.56 68.60 2.03 42.14 16 28 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 29 H -0.31 -13.81 7.11 99.48 0.71 -13.10 16 30 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 31 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.34 7.69 -2.39 -0.02 1.32 16 35 H 0.07 1.81 5.52 -2.38 -0.01 1.79 16 36 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.58 7.79 -2.38 -0.02 1.57 16 38 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.41 14.65 6.16 -92.71 -0.57 14.08 16 41 H 0.07 2.58 7.53 -2.39 -0.02 2.57 16 42 H 0.10 3.07 7.34 -2.38 -0.02 3.05 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 2.43 6.33 -2.39 -0.02 2.41 16 45 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.05 1.96 5.97 -2.38 -0.01 1.95 16 50 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 53 H 0.05 2.93 6.19 -2.38 -0.01 2.92 16 54 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 55 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -68.43 405.46 3.94 -64.49 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.28 Total: 37.80 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 5.49 Total: 7.47 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -2.71 Total: -108.56 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.15 Total: -43.34 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -68.43 3.94 -64.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089654103.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.382 kcal (2) G-P(sol) polarization free energy of solvation -68.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds