Wall clock time and date at job start Tue Mar 31 2020 23:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 H 1.08997 * 109.47170 * 304.45479 * 3 2 1 5 5 O 1.42892 * 109.47370 * 64.46244 * 3 2 1 6 6 C 1.42901 * 113.99901 * 205.43635 * 5 3 2 7 7 C 1.50702 * 109.46445 * 184.46247 * 3 2 1 8 8 O 1.21280 * 119.99518 * 244.99555 * 7 3 2 9 9 N 1.34773 * 120.00293 * 65.00042 * 7 3 2 10 10 C 1.46922 * 120.63174 * 355.89598 * 9 7 3 11 11 C 1.53625 * 108.54608 * 126.36511 * 10 9 7 12 12 C 1.53038 * 109.24006 * 54.85897 * 11 10 9 13 13 C 1.53044 * 109.53833 * 298.51040 * 12 11 10 14 14 C 1.46930 * 120.63076 * 176.17076 * 9 7 3 15 15 H 1.08999 * 109.58110 * 113.79916 * 14 9 7 16 16 C 1.52997 * 109.58597 * 353.37761 * 14 9 7 17 17 C 1.53000 * 112.84853 * 302.37890 * 16 14 9 18 18 N 1.46496 * 109.47228 * 277.04313 * 17 16 14 19 19 C 1.36940 * 119.99516 * 172.89654 * 18 17 16 20 20 H 1.07994 * 120.00232 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99480 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00074 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99629 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46829 * 89.99995 * 23 21 19 25 25 H 1.48498 * 109.46984 * 209.99289 * 23 21 19 26 26 H 1.48493 * 109.47277 * 329.99568 * 23 21 19 27 27 C 1.53785 * 113.61227 * 171.07505 * 16 14 9 28 28 C 1.53772 * 87.08015 * 220.01609 * 27 16 14 29 29 C 1.53780 * 113.61520 * 73.58056 * 16 14 9 30 30 H 1.08995 * 109.47072 * 304.95301 * 1 2 3 31 31 H 1.08997 * 109.47054 * 64.95242 * 1 2 3 32 32 H 1.08997 * 109.47112 * 184.94507 * 1 2 3 33 33 H 1.08997 * 109.46922 * 239.99401 * 2 1 3 34 34 H 1.08999 * 109.46979 * 119.99815 * 2 1 3 35 35 H 1.08995 * 109.46852 * 304.98138 * 6 5 3 36 36 H 1.08995 * 109.47275 * 64.98852 * 6 5 3 37 37 H 1.09007 * 109.46913 * 184.98101 * 6 5 3 38 38 H 1.08999 * 109.58979 * 246.20460 * 10 9 7 39 39 H 1.09008 * 109.58698 * 6.62823 * 10 9 7 40 40 H 1.08993 * 109.63579 * 294.86664 * 11 10 9 41 41 H 1.09004 * 109.46032 * 174.73816 * 11 10 9 42 42 H 1.09000 * 109.46556 * 178.48758 * 12 11 10 43 43 H 1.09009 * 109.46488 * 58.52667 * 12 11 10 44 44 H 1.08993 * 109.49877 * 301.41475 * 13 12 11 45 45 H 1.08999 * 109.52371 * 181.32919 * 13 12 11 46 46 H 1.09005 * 109.46980 * 37.04788 * 17 16 14 47 47 H 1.09004 * 109.46676 * 157.04129 * 17 16 14 48 48 H 0.97000 * 119.99976 * 352.88681 * 18 17 16 49 49 H 0.96999 * 119.99261 * 180.02562 * 22 21 19 50 50 H 1.08996 * 113.61671 * 334.57116 * 27 16 14 51 51 H 1.09006 * 113.61271 * 105.46866 * 27 16 14 52 52 H 1.09000 * 113.62032 * 270.88388 * 28 27 16 53 53 H 1.09005 * 113.69369 * 139.98979 * 28 27 16 54 54 H 1.09005 * 113.61089 * 254.52880 * 29 16 14 55 55 H 1.08998 * 113.61941 * 25.34783 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6129 1.9789 -0.8474 5 8 1.6512 2.0852 1.2156 6 6 1.5462 3.5067 1.1136 7 6 3.5429 1.4439 -0.1106 8 8 4.2179 1.8636 0.8055 9 7 4.1370 0.9788 -1.2274 10 6 3.3384 0.3850 -2.3082 11 6 3.6826 1.1038 -3.6216 12 6 5.1945 1.0402 -3.8500 13 6 5.9155 1.7568 -2.7059 14 6 5.5961 1.0506 -1.3846 15 1 6.0119 0.0431 -1.3988 16 6 6.1990 1.8411 -0.2216 17 6 5.6263 3.2550 -0.1042 18 7 6.3303 4.1454 -1.0303 19 6 5.8940 5.4311 -1.2087 20 1 5.0307 5.7885 -0.6671 21 6 6.5608 6.2747 -2.0867 22 7 7.6126 5.8390 -2.7471 23 14 5.9652 8.0284 -2.3306 24 1 6.6389 8.9204 -1.3530 25 1 6.2874 8.4731 -3.7103 26 1 4.4960 8.0857 -2.1225 27 6 7.7352 1.7906 -0.1734 28 6 7.6048 1.6682 1.3539 29 6 6.2103 1.0686 1.1080 30 1 -0.3633 0.5887 0.8423 31 1 -0.3633 0.4351 -0.9310 32 1 -0.3633 -1.0238 0.0886 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 2.4852 3.9144 0.7394 36 1 0.7394 3.7632 0.4271 37 1 1.3339 3.9268 2.0969 38 1 3.5738 -0.6756 -2.3963 39 1 2.2777 0.5090 -2.0894 40 1 3.3670 2.1454 -3.5627 41 1 3.1688 0.6142 -4.4490 42 1 5.4399 1.5258 -4.7945 43 1 5.5133 -0.0016 -3.8840 44 1 5.5789 2.7922 -2.6556 45 1 6.9911 1.7319 -2.8809 46 1 4.5649 3.2388 -0.3518 47 1 5.7559 3.6158 0.9161 48 1 7.1055 3.8243 -1.5169 49 1 8.0786 6.4286 -3.3603 50 1 8.1581 0.9052 -0.6479 51 1 8.2128 2.7151 -0.4982 52 1 7.5825 2.6288 1.8687 53 1 8.3098 0.9659 1.7988 54 1 5.4567 1.4101 1.8178 55 1 6.2149 -0.0143 0.9840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105516170.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:58 Heat of formation + Delta-G solvation = -10.941968 kcal Electronic energy + Delta-G solvation = -33983.252076 eV Core-core repulsion = 30022.959911 eV Total energy + Delta-G solvation = -3960.292165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.54124 -39.97293 -38.53125 -37.85878 -35.98605 -34.93471 -33.36097 -32.94498 -31.93915 -29.08494 -28.13461 -27.31552 -26.59998 -26.15126 -25.16650 -24.00993 -22.96461 -22.86157 -21.59595 -20.30531 -19.49835 -18.76325 -18.19030 -17.72919 -17.18458 -16.77650 -16.52116 -16.28158 -16.00031 -15.76783 -15.54786 -15.11526 -14.97414 -14.92989 -14.53324 -14.45825 -14.35291 -14.04908 -13.67664 -13.55336 -13.33519 -13.17518 -13.01604 -12.83627 -12.75576 -12.70911 -12.46372 -12.39174 -12.28993 -12.16352 -11.94941 -11.86508 -11.83307 -11.66450 -11.36235 -11.34510 -11.22915 -11.15620 -10.95286 -10.72768 -10.54208 -9.65126 -9.31114 -8.83315 -7.92155 -5.16863 1.41413 1.43733 1.51355 1.72914 2.04606 2.55539 2.80512 3.39325 3.48833 3.73814 3.79905 3.88137 3.91940 3.98714 4.01736 4.08024 4.11702 4.16446 4.28064 4.35533 4.37609 4.42537 4.47332 4.50070 4.55555 4.60615 4.63588 4.71072 4.79932 4.86445 4.87390 4.89567 4.92969 4.99214 5.03426 5.09953 5.11908 5.15149 5.21729 5.22521 5.28132 5.36292 5.36699 5.43707 5.48417 5.51864 5.60720 5.71910 5.76042 5.86401 6.05187 6.31418 6.61609 7.37265 7.49288 8.19750 8.45324 9.31152 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004940 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.716383 B = 5666.849747 C = 6111.468134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.089 0.911 5 O -0.372 6.372 6 C 0.033 3.967 7 C 0.460 3.540 8 O -0.520 6.520 9 N -0.599 5.599 10 C 0.097 3.903 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.135 4.135 14 C 0.174 3.826 15 H 0.085 0.915 16 C -0.057 4.057 17 C 0.214 3.786 18 N -0.738 5.738 19 C -0.236 4.236 20 H 0.058 0.942 21 C -0.069 4.069 22 N -0.964 5.964 23 Si 0.964 3.036 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.274 1.274 27 C -0.138 4.138 28 C -0.141 4.141 29 C -0.096 4.096 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.024 0.976 47 H -0.021 1.021 48 H 0.375 0.625 49 H 0.249 0.751 50 H 0.094 0.906 51 H 0.040 0.960 52 H 0.049 0.951 53 H 0.079 0.921 54 H 0.086 0.914 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -18.519 0.428 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.107 0.893 5 O -0.289 6.289 6 C -0.064 4.064 7 C 0.249 3.751 8 O -0.398 6.398 9 N -0.334 5.334 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.150 4.150 13 C -0.174 4.174 14 C 0.071 3.929 15 H 0.103 0.897 16 C -0.058 4.058 17 C 0.089 3.911 18 N -0.383 5.383 19 C -0.368 4.368 20 H 0.076 0.924 21 C -0.262 4.262 22 N -0.615 5.615 23 Si 0.794 3.206 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.199 1.199 27 C -0.177 4.177 28 C -0.179 4.179 29 C -0.134 4.134 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.059 0.941 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.042 0.958 47 H -0.003 1.003 48 H 0.210 0.790 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.058 0.942 52 H 0.068 0.932 53 H 0.097 0.903 54 H 0.103 0.897 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.459 -18.258 1.134 22.711 hybrid contribution 0.731 2.020 -0.486 2.203 sum -12.728 -16.238 0.648 20.642 Atomic orbital electron populations 1.21707 0.93344 1.02866 1.02370 1.21835 0.98153 0.91115 1.04363 1.22267 0.89871 0.97668 0.88883 0.89343 1.87899 1.87910 1.19964 1.33111 1.22829 0.99436 0.80581 1.03529 1.21791 0.91740 0.78961 0.82583 1.90871 1.63441 1.45517 1.39928 1.48095 1.06870 1.60562 1.17886 1.22370 0.96410 0.98248 0.85418 1.21987 0.96142 1.00505 0.98324 1.21473 0.95556 1.00869 0.97105 1.22001 0.99903 1.00745 0.94718 1.21101 0.79792 0.98052 0.93971 0.89691 1.21889 0.93742 0.94926 0.95220 1.20593 0.93595 0.87275 0.89632 1.43024 1.34940 1.09981 1.50388 1.19465 1.08828 0.89951 1.18604 0.92432 1.25374 0.98704 1.01749 1.00325 1.69806 1.22838 1.36509 1.32378 0.85281 0.77841 0.80939 0.76587 1.21867 1.21773 1.19910 1.23014 0.96405 1.01082 0.97155 1.22782 0.99129 1.00224 0.95752 1.23241 0.94909 0.97913 0.97288 0.93203 0.91589 0.90746 0.87257 0.91601 0.96430 0.92177 0.88476 0.88257 0.87502 0.94064 0.87825 0.92803 0.89969 0.92545 0.92932 0.95781 1.00314 0.79036 0.94168 0.88743 0.94151 0.93235 0.90276 0.89663 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.86 71.98 0.71 -1.20 16 2 C -0.12 -1.92 5.15 30.60 0.16 -1.76 16 3 C 0.07 1.77 1.70 29.85 0.05 1.83 16 4 H 0.09 1.92 7.37 -2.39 -0.02 1.90 16 5 O -0.37 -10.48 9.36 -129.99 -1.22 -11.69 16 6 C 0.03 0.88 10.71 113.37 1.21 2.10 16 7 C 0.46 13.85 5.18 87.66 0.45 14.30 16 8 O -0.52 -19.38 7.04 15.96 0.11 -19.27 16 9 N -0.60 -15.77 2.89 -794.20 -2.29 -18.07 16 10 C 0.10 1.67 5.01 86.51 0.43 2.10 16 11 C -0.13 -2.65 6.10 30.82 0.19 -2.46 16 12 C -0.11 -2.78 5.88 30.62 0.18 -2.60 16 13 C -0.14 -4.60 4.39 30.67 0.13 -4.46 16 14 C 0.17 5.29 2.33 44.97 0.10 5.40 16 15 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 16 C -0.06 -2.09 0.09 -51.66 0.00 -2.10 16 17 C 0.21 10.02 3.61 86.38 0.31 10.33 16 18 N -0.74 -40.02 3.65 -343.45 -1.25 -41.27 16 19 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 20 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 21 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 22 N -0.96 -60.20 13.06 21.65 0.28 -59.91 16 23 Si 0.96 48.00 29.55 68.60 2.03 50.03 16 24 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 27 C -0.14 -5.04 6.50 31.12 0.20 -4.84 16 28 C -0.14 -4.86 7.74 31.12 0.24 -4.62 16 29 C -0.10 -3.24 5.74 31.12 0.18 -3.06 16 30 H 0.05 0.81 7.68 -2.39 -0.02 0.80 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 1.27 5.12 -2.39 -0.01 1.26 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.02 0.59 7.82 -2.39 -0.02 0.57 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.40 4.49 -2.38 -0.01 1.39 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.06 2.52 5.99 -2.39 -0.01 2.51 16 45 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 46 H 0.02 1.17 5.04 -2.38 -0.01 1.16 16 47 H -0.02 -1.11 7.39 -2.39 -0.02 -1.13 16 48 H 0.38 21.17 5.30 -92.71 -0.49 20.68 16 49 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 51 H 0.04 1.78 6.47 -2.38 -0.02 1.76 16 52 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 53 H 0.08 2.26 8.14 -2.38 -0.02 2.25 16 54 H 0.09 3.28 5.56 -51.45 -0.29 3.00 16 55 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 Total: -1.00 -73.53 396.38 3.63 -69.90 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.10 Total: 38.15 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 5.86 Total: -7.86 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -3.26 Total: -119.25 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.10 Total: -30.96 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -73.53 3.63 -69.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105516170.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.961 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds