Wall clock time and date at job start Wed Apr 1 2020 00:00:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53013 * 109.46786 * 2 1
4 4 H 1.09000 * 109.47033 * 56.18235 * 3 2 1
5 5 O 1.42896 * 109.47055 * 296.18189 * 3 2 1
6 6 C 1.42895 * 114.00083 * 97.96360 * 5 3 2
7 7 C 1.50696 * 109.46833 * 176.18114 * 3 2 1
8 8 O 1.21281 * 119.99813 * 106.85508 * 7 3 2
9 9 N 1.34779 * 120.00334 * 286.85521 * 7 3 2
10 10 C 1.46924 * 120.62771 * 6.31140 * 9 7 3
11 11 C 1.53193 * 108.77471 * 233.63258 * 10 9 7
12 12 C 1.53042 * 109.31496 * 305.36486 * 11 10 9
13 13 C 1.53049 * 109.53422 * 61.36611 * 12 11 10
14 14 C 1.46927 * 120.62867 * 186.34026 * 9 7 3
15 15 H 1.08997 * 109.70124 * 246.21822 * 14 9 7
16 16 C 1.52991 * 109.59035 * 6.57843 * 14 9 7
17 17 C 1.53001 * 112.85077 * 61.03867 * 16 14 9
18 18 N 1.46497 * 109.47545 * 175.41250 * 17 16 14
19 19 C 1.36939 * 120.00549 * 179.97438 * 18 17 16
20 20 H 1.07996 * 119.99350 * 359.97438 * 19 18 17
21 21 C 1.38803 * 120.00115 * 179.97438 * 19 18 17
22 22 N 1.31624 * 120.00427 * 359.72105 * 21 19 18
23 23 Si 1.86799 * 119.99856 * 179.97438 * 21 19 18
24 24 H 1.48498 * 109.47111 * 359.97438 * 23 21 19
25 25 H 1.48509 * 109.47184 * 119.99787 * 23 21 19
26 26 H 1.48501 * 109.47347 * 239.99581 * 23 21 19
27 27 C 1.53787 * 113.69367 * 192.30319 * 16 14 9
28 28 C 1.53782 * 87.07921 * 89.12709 * 27 16 14
29 29 C 1.53779 * 113.61690 * 289.83935 * 16 14 9
30 30 H 1.09006 * 109.47003 * 185.78953 * 1 2 3
31 31 H 1.09001 * 109.47378 * 305.78572 * 1 2 3
32 32 H 1.09003 * 109.47628 * 65.79186 * 1 2 3
33 33 H 1.09001 * 109.47430 * 240.00177 * 2 1 3
34 34 H 1.09004 * 109.47602 * 119.99725 * 2 1 3
35 35 H 1.09001 * 109.47436 * 185.17154 * 6 5 3
36 36 H 1.09003 * 109.47189 * 305.17375 * 6 5 3
37 37 H 1.09003 * 109.47390 * 65.17085 * 6 5 3
38 38 H 1.09002 * 109.58577 * 113.84747 * 10 9 7
39 39 H 1.08996 * 109.70395 * 353.48892 * 10 9 7
40 40 H 1.09004 * 109.49330 * 185.41411 * 11 10 9
41 41 H 1.08994 * 109.52207 * 65.33832 * 11 10 9
42 42 H 1.08999 * 109.46308 * 301.35035 * 12 11 10
43 43 H 1.08995 * 109.45032 * 181.37572 * 12 11 10
44 44 H 1.08994 * 109.49392 * 178.67806 * 13 12 11
45 45 H 1.09000 * 109.49227 * 58.58351 * 13 12 11
46 46 H 1.08997 * 109.47546 * 55.40314 * 17 16 14
47 47 H 1.09002 * 109.46747 * 295.41063 * 17 16 14
48 48 H 0.97004 * 119.99697 * 359.97438 * 18 17 16
49 49 H 0.96996 * 120.00149 * 179.97438 * 22 21 19
50 50 H 1.08994 * 113.61587 * 203.67625 * 27 16 14
51 51 H 1.08996 * 113.61023 * 334.58127 * 27 16 14
52 52 H 1.08999 * 113.61347 * 270.88804 * 28 27 16
53 53 H 1.08994 * 113.61265 * 139.98580 * 28 27 16
54 54 H 1.09005 * 113.61183 * 25.34626 * 29 16 14
55 55 H 1.09001 * 113.62060 * 156.24959 * 29 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4427 0.0000
4 1 1.6217 1.9758 0.8538
5 8 1.6382 2.0898 -1.2090
6 6 0.4629 2.8916 -1.0763
7 6 3.5439 1.4437 0.0946
8 8 4.2124 1.7263 -0.8770
9 7 4.1461 1.1306 1.2590
10 6 3.3591 0.6533 2.4042
11 6 3.6791 1.5272 3.6210
12 6 5.1914 1.5331 3.8563
13 6 5.8970 2.1279 2.6354
14 6 5.6021 1.2608 1.4074
15 1 6.0474 0.2750 1.5408
16 6 6.1877 1.9235 0.1590
17 6 5.6381 3.3313 -0.0796
18 7 6.3249 3.9364 -1.2235
19 6 5.9971 5.2032 -1.6272
20 1 5.2320 5.7560 -1.1026
21 6 6.6483 5.7765 -2.7107
22 7 7.5846 5.1048 -3.3467
23 14 6.2006 7.5043 -3.2619
24 1 5.1295 8.0417 -2.3849
25 1 7.3983 8.3780 -3.1736
26 1 5.7179 7.4666 -4.6658
27 6 7.7210 1.8386 0.0759
28 6 7.5286 0.5017 -0.6592
29 6 6.1490 1.0272 -1.0899
30 1 -0.3633 -1.0225 0.1037
31 1 -0.3634 0.6009 0.8336
32 1 -0.3634 0.4214 -0.9373
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 0.1714 3.2740 -2.0545
36 1 -0.3459 2.2860 -0.6672
37 1 0.6664 3.7266 -0.4057
38 1 3.6194 -0.3829 2.6199
39 1 2.2960 0.7227 2.1739
40 1 3.1757 1.1251 4.5002
41 1 3.3353 2.5454 3.4388
42 1 5.5382 0.5119 4.0145
43 1 5.4194 2.1345 4.7363
44 1 6.9720 2.1534 2.8132
45 1 5.5323 3.1403 2.4619
46 1 5.8041 3.9415 0.8082
47 1 4.5694 3.2739 -0.2863
48 1 7.0119 3.4396 -1.6949
49 1 8.0393 5.5053 -4.1041
50 1 8.1685 2.6166 -0.5426
51 1 8.2059 1.7372 1.0468
52 1 7.4791 -0.3597 0.0068
53 1 8.2194 0.3568 -1.4897
54 1 5.3648 0.2707 -1.0603
55 1 6.1667 1.5833 -2.0273
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001105516173.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:00:12
Heat of formation + Delta-G solvation = -13.902792 kcal
Electronic energy + Delta-G solvation = -33592.712945 eV
Core-core repulsion = 29632.292390 eV
Total energy + Delta-G solvation = -3960.420556 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.38 seconds
Orbital eigenvalues (eV)
-42.57440 -39.99328 -38.54231 -38.09116 -35.88883 -34.66156 -33.34842 -32.89888
-32.09277 -29.46256 -28.46011 -27.03930 -26.53476 -25.87818 -25.10478 -23.96571
-23.16940 -22.87556 -21.56085 -20.52831 -19.28089 -18.75780 -18.06027 -17.67773
-17.29423 -16.70233 -16.56548 -16.28098 -16.15793 -15.67082 -15.49478 -15.11362
-15.06695 -14.91140 -14.63774 -14.50292 -14.29070 -14.07455 -13.95015 -13.56475
-13.26026 -13.16924 -13.07448 -12.91592 -12.83925 -12.74050 -12.62856 -12.36474
-12.25691 -12.06516 -12.01355 -11.92993 -11.73846 -11.68380 -11.60233 -11.43188
-11.02520 -10.89486 -10.75826 -10.69657 -10.60491 -9.66904 -9.34790 -8.73408
-7.92511 -5.16882 1.39413 1.42936 1.52291 1.74345 1.92754 2.55492
2.96811 3.39120 3.50057 3.70156 3.77699 3.84588 3.90286 3.94738
4.03060 4.07193 4.14227 4.19059 4.24948 4.32623 4.38253 4.38331
4.41918 4.49994 4.55147 4.58781 4.65043 4.71407 4.79767 4.84597
4.86993 4.90356 4.97699 5.05171 5.06593 5.08353 5.09966 5.15897
5.18888 5.19390 5.27371 5.29738 5.33900 5.39121 5.43153 5.48525
5.55682 5.63948 5.79744 5.86172 6.16596 6.31185 6.60633 7.35416
7.47061 8.20426 8.43250 9.32403
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.009833 B = 0.004910 C = 0.003931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2846.726392 B = 5701.797195 C = 7121.902549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.134 4.134
3 C 0.077 3.923
4 H 0.100 0.900
5 O -0.395 6.395
6 C 0.021 3.979
7 C 0.464 3.536
8 O -0.499 6.499
9 N -0.603 5.603
10 C 0.097 3.903
11 C -0.133 4.133
12 C -0.112 4.112
13 C -0.133 4.133
14 C 0.184 3.816
15 H 0.092 0.908
16 C -0.064 4.064
17 C 0.172 3.828
18 N -0.733 5.733
19 C -0.232 4.232
20 H 0.061 0.939
21 C -0.082 4.082
22 N -0.973 5.973
23 Si 0.973 3.027
24 H -0.269 1.269
25 H -0.288 1.288
26 H -0.293 1.293
27 C -0.133 4.133
28 C -0.152 4.152
29 C -0.059 4.059
30 H 0.075 0.925
31 H 0.072 0.928
32 H 0.049 0.951
33 H 0.053 0.947
34 H 0.103 0.897
35 H 0.085 0.915
36 H 0.077 0.923
37 H 0.039 0.961
38 H 0.095 0.905
39 H 0.101 0.899
40 H 0.105 0.895
41 H 0.051 0.949
42 H 0.082 0.918
43 H 0.072 0.928
44 H 0.075 0.925
45 H 0.044 0.956
46 H -0.014 1.014
47 H 0.038 0.962
48 H 0.373 0.627
49 H 0.249 0.751
50 H 0.050 0.950
51 H 0.080 0.920
52 H 0.102 0.898
53 H 0.051 0.949
54 H 0.058 0.942
55 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.836 -15.966 19.534 29.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.172 4.172
3 C 0.016 3.984
4 H 0.117 0.883
5 O -0.313 6.313
6 C -0.075 4.075
7 C 0.253 3.747
8 O -0.375 6.375
9 N -0.340 5.340
10 C -0.024 4.024
11 C -0.171 4.171
12 C -0.149 4.149
13 C -0.171 4.171
14 C 0.081 3.919
15 H 0.110 0.890
16 C -0.065 4.065
17 C 0.046 3.954
18 N -0.376 5.376
19 C -0.364 4.364
20 H 0.079 0.921
21 C -0.273 4.273
22 N -0.625 5.625
23 Si 0.802 3.198
24 H -0.194 1.194
25 H -0.215 1.215
26 H -0.221 1.221
27 C -0.171 4.171
28 C -0.189 4.189
29 C -0.097 4.097
30 H 0.094 0.906
31 H 0.091 0.909
32 H 0.068 0.932
33 H 0.072 0.928
34 H 0.121 0.879
35 H 0.104 0.896
36 H 0.095 0.905
37 H 0.057 0.943
38 H 0.113 0.887
39 H 0.119 0.881
40 H 0.124 0.876
41 H 0.069 0.931
42 H 0.100 0.900
43 H 0.091 0.909
44 H 0.093 0.907
45 H 0.063 0.937
46 H 0.004 0.996
47 H 0.055 0.945
48 H 0.206 0.794
49 H 0.058 0.942
50 H 0.069 0.931
51 H 0.099 0.901
52 H 0.120 0.880
53 H 0.070 0.930
54 H 0.076 0.924
55 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -14.516 -15.671 18.857 28.493
hybrid contribution 0.318 1.533 -1.157 1.947
sum -14.198 -14.137 17.700 26.735
Atomic orbital electron populations
1.21847 0.93292 1.03349 1.02239 1.22035 0.98253 0.93201 1.03672
1.22165 0.90983 0.96345 0.88951 0.88251 1.88044 1.46051 1.65136
1.32097 1.23143 0.87001 0.94150 1.03220 1.21015 0.90728 0.79351
0.83623 1.91019 1.64043 1.43866 1.38549 1.47979 1.07065 1.66684
1.12240 1.22196 0.96443 0.99111 0.84628 1.21952 0.96605 1.00102
0.98489 1.21495 0.95071 1.02042 0.96288 1.21996 1.01484 0.98816
0.94830 1.20882 0.79619 0.98668 0.92737 0.89025 1.21985 0.94273
0.94709 0.95509 1.21138 0.95959 0.91093 0.87227 1.42613 1.45127
1.14861 1.35028 1.19584 1.14894 0.92342 1.09608 0.92063 1.25520
0.99850 1.02669 0.99262 1.69850 1.29398 1.38966 1.24256 0.85063
0.77312 0.79860 0.77527 1.19403 1.21540 1.22073 1.22906 0.96028
0.97593 1.00619 1.23181 0.98614 0.97007 1.00133 1.22489 0.93581
0.97113 0.96479 0.90610 0.90891 0.93173 0.92770 0.87872 0.89640
0.90477 0.94268 0.88725 0.88112 0.87634 0.93053 0.89962 0.90898
0.90666 0.93707 0.99610 0.94504 0.79354 0.94221 0.93094 0.90133
0.87992 0.93038 0.92371 0.94856
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.87 8.58 71.98 0.62 -1.26 16
2 C -0.13 -2.33 5.23 30.60 0.16 -2.17 16
3 C 0.08 1.88 1.86 29.85 0.06 1.94 16
4 H 0.10 1.91 6.87 -2.39 -0.02 1.89 16
5 O -0.39 -12.71 9.72 -130.28 -1.27 -13.98 16
6 C 0.02 0.48 10.35 113.37 1.17 1.65 16
7 C 0.46 14.65 5.32 87.66 0.47 15.12 16
8 O -0.50 -21.59 7.54 15.67 0.12 -21.47 16
9 N -0.60 -14.42 2.95 -795.05 -2.35 -16.77 16
10 C 0.10 1.27 5.26 86.36 0.45 1.72 16
11 C -0.13 -1.60 6.08 30.67 0.19 -1.41 16
12 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16
13 C -0.13 -3.12 5.04 30.68 0.15 -2.97 16
14 C 0.18 4.91 2.28 44.97 0.10 5.01 16
15 H 0.09 2.08 7.31 -2.39 -0.02 2.06 16
16 C -0.06 -2.42 0.25 -51.66 -0.01 -2.43 16
17 C 0.17 8.31 4.73 86.38 0.41 8.72 16
18 N -0.73 -43.45 4.78 -343.47 -1.64 -45.09 16
19 C -0.23 -14.78 9.99 84.03 0.84 -13.94 16
20 H 0.06 3.83 7.83 -2.91 -0.02 3.81 16
21 C -0.08 -5.21 5.50 84.86 0.47 -4.74 16
22 N -0.97 -65.47 13.06 21.65 0.28 -65.18 16
23 Si 0.97 50.85 29.55 68.60 2.03 52.87 16
24 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16
25 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16
26 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16
27 C -0.13 -5.01 6.83 31.12 0.21 -4.80 16
28 C -0.15 -5.14 7.73 31.12 0.24 -4.90 16
29 C -0.06 -2.42 4.49 31.12 0.14 -2.28 16
30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16
31 H 0.07 0.64 8.06 -2.39 -0.02 0.62 16
32 H 0.05 0.77 6.59 -2.39 -0.02 0.75 16
33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16
34 H 0.10 1.23 5.91 -2.38 -0.01 1.21 16
35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
36 H 0.08 1.22 5.63 -2.39 -0.01 1.20 16
37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16
38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
39 H 0.10 0.97 4.67 -2.39 -0.01 0.96 16
40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
44 H 0.07 1.74 7.41 -2.39 -0.02 1.72 16
45 H 0.04 1.33 6.31 -2.39 -0.02 1.32 16
46 H -0.01 -0.67 6.40 -2.39 -0.02 -0.69 16
47 H 0.04 1.94 4.59 -37.77 -0.17 1.77 16
48 H 0.37 23.35 4.99 -92.71 -0.46 22.88 16
49 H 0.25 16.08 8.31 -92.71 -0.77 15.31 16
50 H 0.05 2.40 6.30 -2.39 -0.02 2.39 16
51 H 0.08 2.50 7.34 -2.39 -0.02 2.49 16
52 H 0.10 2.67 7.60 -2.39 -0.02 2.66 16
53 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
54 H 0.06 2.30 6.42 -2.38 -0.02 2.29 16
55 H 0.03 1.74 6.86 -2.39 -0.02 1.72 16
Total: -1.00 -85.31 391.17 3.28 -82.03
By element:
Atomic # 1 Polarization: 35.50 SS G_CDS: 0.26 Total: 35.76 kcal
Atomic # 6 Polarization: -14.02 SS G_CDS: 5.85 Total: -8.17 kcal
Atomic # 7 Polarization: -123.34 SS G_CDS: -3.71 Total: -127.04 kcal
Atomic # 8 Polarization: -34.30 SS G_CDS: -1.15 Total: -35.45 kcal
Atomic # 14 Polarization: 50.85 SS G_CDS: 2.03 Total: 52.87 kcal
Total: -85.31 3.28 -82.03 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001105516173.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.123 kcal
(2) G-P(sol) polarization free energy of solvation -85.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.903 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.38 seconds