Wall clock time and date at job start Tue Mar 31 2020 23:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47184 * 2 1 4 4 H 1.09001 * 109.46907 * 54.99591 * 3 2 1 5 5 C 1.52994 * 109.47158 * 295.00165 * 3 2 1 6 6 C 1.53001 * 109.47368 * 174.99763 * 3 2 1 7 7 H 1.09001 * 109.46848 * 60.00397 * 6 3 2 8 8 C 1.53000 * 109.46843 * 300.00184 * 6 3 2 9 9 C 1.50700 * 109.47322 * 180.02562 * 6 3 2 10 10 O 1.21284 * 119.99663 * 24.76658 * 9 6 3 11 11 N 1.34769 * 119.99896 * 204.76711 * 9 6 3 12 12 C 1.46919 * 120.63323 * 4.56977 * 11 9 6 13 13 C 1.52763 * 109.01102 * 233.58247 * 12 11 9 14 14 C 1.53038 * 109.38203 * 305.59027 * 13 12 11 15 15 O 1.42901 * 109.45928 * 181.25460 * 14 13 12 16 16 C 1.42905 * 113.99799 * 89.93366 * 15 14 13 17 17 C 1.53948 * 113.73739 * 248.74289 * 16 15 14 18 18 N 1.47816 * 86.03608 * 222.08129 * 17 16 15 19 19 C 1.36936 * 134.46370 * 204.64529 * 18 17 16 20 20 H 1.07993 * 120.00381 * 179.86713 * 19 18 17 21 21 C 1.38817 * 119.99351 * 359.86952 * 19 18 17 22 22 N 1.31614 * 120.00277 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99758 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47313 * 89.99912 * 23 21 19 25 25 H 1.48498 * 109.47423 * 209.99696 * 23 21 19 26 26 H 1.48503 * 109.47178 * 329.99693 * 23 21 19 27 27 C 1.47590 * 91.04721 * 24.54852 * 18 17 16 28 28 C 1.53047 * 109.54023 * 61.23956 * 14 13 12 29 29 C 1.46927 * 120.62685 * 184.84823 * 11 9 6 30 30 H 1.08994 * 109.47532 * 299.99725 * 1 2 3 31 31 H 1.09001 * 109.46954 * 59.99992 * 1 2 3 32 32 H 1.09007 * 109.47180 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47369 * 119.99707 * 2 1 3 34 34 H 1.09004 * 109.47576 * 240.00212 * 2 1 3 35 35 H 1.09001 * 109.47238 * 299.99712 * 5 3 2 36 36 H 1.09001 * 109.47654 * 59.99400 * 5 3 2 37 37 H 1.09004 * 109.47431 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.46994 * 66.15246 * 8 6 3 39 39 H 1.09005 * 109.46679 * 186.14761 * 8 6 3 40 40 H 1.09001 * 109.47477 * 306.14411 * 8 6 3 41 41 H 1.08998 * 109.58761 * 353.42298 * 12 11 9 42 42 H 1.09001 * 109.58777 * 113.84552 * 12 11 9 43 43 H 1.08992 * 109.56598 * 185.55431 * 13 12 11 44 44 H 1.09001 * 109.35738 * 65.49923 * 13 12 11 45 45 H 1.08996 * 109.45472 * 301.22220 * 14 13 12 46 46 H 1.08996 * 112.94491 * 20.33074 * 16 15 14 47 47 H 1.08993 * 113.77133 * 336.34679 * 17 16 15 48 48 H 1.09001 * 113.76865 * 107.74805 * 17 16 15 49 49 H 0.96996 * 120.00538 * 180.02562 * 22 21 19 50 50 H 1.09002 * 113.76708 * 221.14795 * 27 18 17 51 51 H 1.09001 * 113.76749 * 89.75781 * 27 18 17 52 52 H 1.08998 * 109.49850 * 178.68598 * 28 14 13 53 53 H 1.09000 * 109.52562 * 58.59750 * 28 14 13 54 54 H 1.08998 * 109.59050 * 246.15417 * 29 11 9 55 55 H 1.09000 * 109.59185 * 6.43951 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 1 3.9994 0.9054 -0.7161 8 6 3.9695 0.7604 1.4331 9 6 4.0671 2.8652 0.1264 10 8 3.3372 3.7662 0.4820 11 7 5.3273 3.1346 -0.2682 12 6 6.1904 2.0692 -0.7957 13 6 7.5000 2.0545 -0.0093 14 6 8.1293 3.4491 -0.0446 15 8 9.3690 3.4301 0.6660 16 6 10.4999 3.1101 -0.1469 17 6 11.1246 1.7397 0.1722 18 7 12.4308 2.4177 0.0337 19 6 13.6988 2.0028 -0.2748 20 1 14.5065 2.7186 -0.3146 21 6 13.9460 0.6621 -0.5363 22 7 12.9618 -0.2103 -0.4873 23 14 15.6758 0.0960 -0.9564 24 1 16.3931 -0.2714 0.2909 25 1 15.6060 -1.0854 -1.8534 26 1 16.4037 1.1947 -1.6408 27 6 11.8193 3.7210 0.3587 28 6 7.1810 4.4554 0.6116 29 6 5.8660 4.4982 -0.1732 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 2.0698 1.5876 -2.1491 36 1 0.5489 2.1252 -1.3970 37 1 1.9989 3.1541 -1.3075 38 1 3.7029 -0.2956 1.3883 39 1 5.0457 0.8576 1.5761 40 1 3.4483 1.2317 2.2664 41 1 5.6903 1.1067 -0.6880 42 1 6.4017 2.2577 -1.8483 43 1 8.1858 1.3345 -0.4556 44 1 7.2977 1.7727 1.0241 45 1 8.3084 3.7404 -1.0795 46 1 10.3194 3.2734 -1.2093 47 1 10.9176 1.3871 1.1826 48 1 10.9378 0.9835 -0.5902 49 1 13.1345 -1.1472 -0.6697 50 1 12.1863 4.5437 -0.2551 51 1 11.8169 3.9517 1.4240 52 1 7.6398 5.4441 0.6070 53 1 6.9816 4.1515 1.6392 54 1 6.0503 4.8889 -1.1739 55 1 5.1508 5.1387 0.3430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105730648.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:56 Heat of formation + Delta-G solvation = -63.201419 kcal Electronic energy + Delta-G solvation = -30637.563708 eV Core-core repulsion = 26675.005403 eV Total energy + Delta-G solvation = -3962.558305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.61715 -40.29651 -38.87213 -37.61196 -36.73945 -34.18718 -33.54023 -32.33489 -31.89528 -30.18251 -29.43550 -26.61771 -26.44578 -25.36280 -24.93565 -24.68544 -23.77826 -22.04344 -21.29316 -20.77920 -19.60163 -18.79192 -18.49265 -17.71855 -17.03695 -16.97700 -16.47022 -16.05201 -15.84547 -15.79977 -15.31830 -15.17607 -15.07527 -14.98974 -14.63370 -14.43306 -14.05185 -13.95297 -13.54908 -13.52789 -13.37475 -13.22441 -13.11270 -12.89304 -12.83599 -12.75473 -12.74981 -12.72670 -12.56562 -12.25734 -12.19897 -12.11410 -11.90225 -11.81743 -11.59304 -11.50946 -11.41642 -11.35500 -11.30798 -10.87387 -10.59645 -10.20529 -9.71190 -8.97037 -7.92561 -5.27400 1.46182 1.48429 1.57102 1.60940 1.98153 2.42273 2.73345 3.27195 3.42652 3.46410 3.68962 3.71856 3.81234 3.92736 3.97156 4.04825 4.09591 4.14471 4.19398 4.30999 4.34013 4.36329 4.39771 4.54952 4.57367 4.64321 4.67045 4.74580 4.76736 4.77415 4.79050 4.83370 4.87227 4.91248 4.93548 4.95585 5.00057 5.10715 5.15265 5.17791 5.19623 5.21833 5.24099 5.27924 5.33638 5.38423 5.49237 5.50818 5.56233 5.57562 5.88921 6.38514 6.47318 6.89517 7.16808 7.57293 8.52455 9.24541 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002151 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.857313 B =13013.017572 C =14070.486649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.070 4.070 4 H 0.059 0.941 5 C -0.148 4.148 6 C -0.106 4.106 7 H 0.113 0.887 8 C -0.142 4.142 9 C 0.520 3.480 10 O -0.579 6.579 11 N -0.612 5.612 12 C 0.111 3.889 13 C -0.154 4.154 14 C 0.085 3.915 15 O -0.383 6.383 16 C 0.071 3.929 17 C 0.149 3.851 18 N -0.639 5.639 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.266 1.266 27 C 0.118 3.882 28 C -0.121 4.121 29 C 0.117 3.883 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.010 0.990 48 H 0.048 0.952 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.042 0.958 52 H 0.090 0.910 53 H 0.059 0.941 54 H 0.085 0.915 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.849 2.949 -2.477 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.089 4.089 4 H 0.077 0.923 5 C -0.206 4.206 6 C -0.127 4.127 7 H 0.131 0.869 8 C -0.199 4.199 9 C 0.310 3.690 10 O -0.459 6.459 11 N -0.345 5.345 12 C -0.011 4.011 13 C -0.192 4.192 14 C 0.027 3.973 15 O -0.301 6.301 16 C 0.012 3.988 17 C 0.024 3.976 18 N -0.368 5.368 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.810 3.190 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.190 1.190 27 C -0.007 4.007 28 C -0.159 4.159 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.028 0.972 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.085 0.915 51 H 0.060 0.940 52 H 0.109 0.891 53 H 0.077 0.923 54 H 0.104 0.896 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.984 3.276 -2.187 24.305 hybrid contribution 1.224 -0.476 0.076 1.315 sum -22.760 2.800 -2.110 23.028 Atomic orbital electron populations 1.21815 0.95598 1.01967 1.01742 1.21630 0.96216 0.94679 1.02999 1.20968 0.92128 0.97242 0.98593 0.92265 1.21889 1.01869 0.99829 0.96975 1.21500 0.97691 0.91691 1.01819 0.86904 1.21802 1.01499 1.01823 0.94808 1.21139 0.80817 0.91976 0.75109 1.90646 1.56445 1.49114 1.49689 1.48299 1.12855 1.10147 1.63186 1.21835 0.89652 0.91527 0.98129 1.22334 0.97239 0.97974 1.01690 1.22285 0.83828 0.95090 0.96048 1.87935 1.15019 1.90108 1.37011 1.24440 0.84339 0.95423 0.94553 1.22642 0.83361 0.94534 0.97105 1.46096 1.04976 1.05311 1.80400 1.19412 0.84889 0.92911 1.39263 0.89591 1.25688 1.01823 0.95833 1.02683 1.70002 1.31993 1.01860 1.56240 0.85023 0.78898 0.77680 0.77384 1.21528 1.21745 1.19048 1.22885 0.89903 0.89599 0.98361 1.21908 0.94249 1.00082 0.99671 1.21558 0.94127 0.83567 1.01282 0.93316 0.92518 0.91943 0.90938 0.90886 0.91872 0.91804 0.94395 0.88984 0.92406 0.93022 0.87255 0.89338 0.90567 0.91783 0.90816 0.88398 0.97181 0.93333 0.94090 0.91508 0.93977 0.89134 0.92256 0.89643 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.01 16 2 C -0.12 -1.34 5.19 30.59 0.16 -1.18 16 3 C -0.07 -1.11 1.61 -10.79 -0.02 -1.12 16 4 H 0.06 1.19 7.87 -2.39 -0.02 1.17 16 5 C -0.15 -2.40 8.66 71.98 0.62 -1.78 16 6 C -0.11 -1.67 1.48 -11.54 -0.02 -1.69 16 7 H 0.11 1.32 6.29 -2.39 -0.02 1.31 16 8 C -0.14 -2.09 8.50 71.98 0.61 -1.48 16 9 C 0.52 11.37 6.00 87.66 0.53 11.90 16 10 O -0.58 -16.85 14.43 -3.04 -0.04 -16.89 16 11 N -0.61 -11.92 2.98 -819.75 -2.44 -14.36 16 12 C 0.11 1.79 6.23 86.22 0.54 2.33 16 13 C -0.15 -3.40 5.68 30.53 0.17 -3.22 16 14 C 0.09 2.06 2.57 30.62 0.08 2.13 16 15 O -0.38 -12.52 10.01 -148.98 -1.49 -14.01 16 16 C 0.07 2.64 4.44 31.25 0.14 2.77 16 17 C 0.15 7.17 7.36 86.44 0.64 7.81 16 18 N -0.64 -33.33 3.70 -720.74 -2.67 -36.00 16 19 C -0.24 -13.35 10.70 84.03 0.90 -12.45 16 20 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 22 N -0.95 -57.05 11.39 21.65 0.25 -56.80 16 23 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.12 4.84 8.77 86.48 0.76 5.60 16 28 C -0.12 -2.56 5.73 30.68 0.18 -2.38 16 29 C 0.12 2.27 6.42 86.36 0.55 2.82 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.62 6.56 -2.39 -0.02 0.61 16 32 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.07 0.75 6.31 -2.39 -0.02 0.74 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.93 6.57 -2.39 -0.02 0.92 16 37 H 0.04 0.80 6.45 -2.38 -0.02 0.78 16 38 H 0.09 0.98 6.66 -2.39 -0.02 0.96 16 39 H 0.06 0.92 8.05 -2.38 -0.02 0.90 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 1.37 5.29 -2.39 -0.01 1.35 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.60 7.43 -2.39 -0.02 1.58 16 46 H 0.10 3.30 7.47 -2.39 -0.02 3.28 16 47 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.05 2.53 7.17 -2.39 -0.02 2.52 16 49 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 54 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 55 H 0.08 1.86 7.03 -2.39 -0.02 1.85 16 Total: -1.00 -70.91 417.17 3.47 -67.44 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.84 Total: 17.60 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 7.00 Total: 5.71 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -4.86 Total: -107.16 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.54 Total: -30.90 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.91 3.47 -67.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105730648.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.237 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds