Wall clock time and date at job start Tue Mar 31 2020 23:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47111 * 2 1 4 4 H 1.09001 * 109.46893 * 55.00342 * 3 2 1 5 5 C 1.53000 * 109.47301 * 295.00406 * 3 2 1 6 6 C 1.52995 * 109.47435 * 174.99975 * 3 2 1 7 7 H 1.09002 * 109.47432 * 59.99923 * 6 3 2 8 8 C 1.52996 * 109.47580 * 180.02562 * 6 3 2 9 9 C 1.50712 * 109.47056 * 300.00629 * 6 3 2 10 10 O 1.21272 * 119.99759 * 337.33135 * 9 6 3 11 11 N 1.34780 * 119.99860 * 157.33319 * 9 6 3 12 12 C 1.46928 * 120.63024 * 354.60898 * 11 9 6 13 13 C 1.53192 * 108.88984 * 233.51493 * 12 11 9 14 14 C 1.53082 * 109.29303 * 305.58111 * 13 12 11 15 15 O 1.42898 * 109.44809 * 181.24499 * 14 13 12 16 16 C 1.42904 * 114.00344 * 89.78977 * 15 14 13 17 17 C 1.53946 * 113.74024 * 248.73965 * 16 15 14 18 18 N 1.47816 * 86.03550 * 222.07963 * 17 16 15 19 19 C 1.36930 * 134.45613 * 204.64149 * 18 17 16 20 20 H 1.08008 * 120.00043 * 179.86603 * 19 18 17 21 21 C 1.38814 * 120.00052 * 359.86762 * 19 18 17 22 22 N 1.31620 * 120.00071 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99863 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47217 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46997 * 119.99962 * 23 21 19 26 26 H 1.48497 * 109.47083 * 239.99759 * 23 21 19 27 27 C 1.47580 * 91.04819 * 24.54896 * 18 17 16 28 28 C 1.53034 * 109.66248 * 61.15399 * 14 13 12 29 29 C 1.46922 * 120.62864 * 174.58365 * 11 9 6 30 30 H 1.09006 * 109.46872 * 299.99681 * 1 2 3 31 31 H 1.08994 * 109.47055 * 59.99663 * 1 2 3 32 32 H 1.09002 * 109.46806 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47348 * 240.00406 * 2 1 3 34 34 H 1.09003 * 109.47689 * 119.99848 * 2 1 3 35 35 H 1.08996 * 109.46671 * 299.99741 * 5 3 2 36 36 H 1.08995 * 109.47366 * 59.99581 * 5 3 2 37 37 H 1.09002 * 109.46869 * 179.97438 * 5 3 2 38 38 H 1.08996 * 109.47047 * 52.98435 * 8 6 3 39 39 H 1.08997 * 109.47301 * 172.98666 * 8 6 3 40 40 H 1.08998 * 109.46778 * 292.98803 * 8 6 3 41 41 H 1.08997 * 109.58409 * 353.36843 * 12 11 9 42 42 H 1.08998 * 109.58764 * 113.65678 * 12 11 9 43 43 H 1.08999 * 109.49872 * 65.38432 * 13 12 11 44 44 H 1.08997 * 109.50121 * 185.48736 * 13 12 11 45 45 H 1.09006 * 109.33242 * 301.13248 * 14 13 12 46 46 H 1.09001 * 112.94309 * 20.32627 * 16 15 14 47 47 H 1.09001 * 113.76833 * 336.34308 * 17 16 15 48 48 H 1.09001 * 113.77194 * 107.74018 * 17 16 15 49 49 H 0.96999 * 119.99780 * 179.97438 * 22 21 19 50 50 H 1.09005 * 113.76872 * 221.15023 * 27 18 17 51 51 H 1.09003 * 113.77274 * 89.75576 * 27 18 17 52 52 H 1.08997 * 109.49769 * 178.75222 * 28 14 13 53 53 H 1.08996 * 109.52690 * 58.66346 * 28 14 13 54 54 H 1.09002 * 109.58906 * 246.20136 * 29 11 9 55 55 H 1.09002 * 109.58769 * 6.48237 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4445 0.1257 7 1 3.9995 0.9054 -0.7161 8 6 4.0748 2.8869 0.1264 9 6 3.9635 0.7706 1.4135 10 8 3.1739 0.7012 2.3313 11 7 5.1977 0.2450 1.5450 12 6 6.1243 0.2159 0.4051 13 6 6.6201 -1.2197 0.2055 14 6 7.2163 -1.7360 1.5175 15 8 7.7061 -3.0648 1.3272 16 6 9.0696 -3.1267 0.9038 17 6 9.2478 -3.6272 -0.5410 18 7 10.3811 -4.4190 -0.0181 19 6 11.5191 -4.9445 -0.5694 20 1 12.2110 -5.4997 0.0468 21 6 11.7835 -4.7637 -1.9200 22 7 10.9406 -4.0867 -2.6708 23 14 13.3363 -5.4801 -2.6719 24 1 14.1114 -6.1909 -1.6235 25 1 12.9699 -6.4347 -3.7487 26 1 14.1615 -4.3846 -3.2412 27 6 9.7951 -4.4136 1.3363 28 6 6.1402 -1.7402 2.6056 29 6 5.6421 -0.3091 2.8310 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0698 1.5877 -2.1491 36 1 0.5489 2.1253 -1.3969 37 1 1.9982 3.1545 -1.3070 38 1 3.5474 3.4584 0.8901 39 1 5.1435 2.8944 0.3403 40 1 3.8966 3.3357 -0.8509 41 1 5.6082 0.5526 -0.4940 42 1 6.9721 0.8706 0.6066 43 1 5.7847 -1.8557 -0.0873 44 1 7.3815 -1.2366 -0.5742 45 1 8.0372 -1.0863 1.8211 46 1 9.6247 -2.2148 1.1240 47 1 8.4171 -4.2340 -0.9014 48 1 9.5422 -2.8470 -1.2431 49 1 11.1255 -3.9601 -3.6145 50 1 10.5258 -4.2603 2.1306 51 1 9.1256 -5.2520 1.5287 52 1 6.5617 -2.1289 3.5326 53 1 5.3076 -2.3699 2.2922 54 1 6.4519 0.3008 3.2315 55 1 4.8086 -0.3165 3.5334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105730650.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:05 Heat of formation + Delta-G solvation = -63.074128 kcal Electronic energy + Delta-G solvation = -30745.518609 eV Core-core repulsion = 26782.965824 eV Total energy + Delta-G solvation = -3962.552785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.60866 -40.30567 -38.87352 -37.53808 -36.72513 -34.21157 -33.70776 -32.37187 -32.04686 -29.54708 -29.33679 -26.96711 -26.61444 -25.90681 -24.77541 -24.44710 -23.39838 -22.02607 -21.33967 -20.80364 -19.71427 -18.80416 -18.52354 -17.72931 -17.10290 -16.98293 -16.37394 -16.06593 -15.89907 -15.80229 -15.45425 -15.24552 -14.97446 -14.89377 -14.62539 -14.32639 -14.08054 -13.74831 -13.57915 -13.49730 -13.41095 -13.26501 -13.15915 -13.01386 -12.87215 -12.81366 -12.76920 -12.58852 -12.50903 -12.31674 -12.22831 -12.17820 -11.88635 -11.82700 -11.52921 -11.52121 -11.43074 -11.34700 -11.31128 -10.88872 -10.59503 -10.21528 -9.70117 -8.97616 -7.92902 -5.27926 1.46140 1.47505 1.57880 1.62600 1.98615 2.41780 2.72778 3.26970 3.43325 3.47086 3.67497 3.70399 3.81299 3.90889 3.97554 4.04695 4.07142 4.12922 4.18949 4.29999 4.32485 4.37736 4.42074 4.52944 4.57753 4.63914 4.65972 4.72717 4.76129 4.77443 4.79524 4.84934 4.86914 4.92308 4.94761 4.97246 5.01765 5.11412 5.13695 5.17204 5.18470 5.20153 5.22978 5.25103 5.32270 5.36645 5.48760 5.50955 5.54289 5.58551 5.88345 6.39167 6.46897 6.89135 7.17763 7.56870 8.51899 9.24294 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017265 B = 0.002220 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.363667 B =12609.387970 C =13266.154294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.070 4.070 4 H 0.063 0.937 5 C -0.146 4.146 6 C -0.108 4.108 7 H 0.107 0.893 8 C -0.138 4.138 9 C 0.518 3.482 10 O -0.578 6.578 11 N -0.613 5.613 12 C 0.112 3.888 13 C -0.155 4.155 14 C 0.086 3.914 15 O -0.384 6.384 16 C 0.071 3.929 17 C 0.149 3.851 18 N -0.640 5.640 19 C -0.236 4.236 20 H 0.086 0.914 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.288 1.288 27 C 0.118 3.882 28 C -0.121 4.121 29 C 0.117 3.883 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.009 0.991 48 H 0.049 0.951 49 H 0.250 0.750 50 H 0.067 0.933 51 H 0.042 0.958 52 H 0.090 0.910 53 H 0.055 0.945 54 H 0.089 0.911 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 16.642 6.201 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.089 4.089 4 H 0.081 0.919 5 C -0.203 4.203 6 C -0.129 4.129 7 H 0.125 0.875 8 C -0.196 4.196 9 C 0.308 3.692 10 O -0.458 6.458 11 N -0.346 5.346 12 C -0.010 4.010 13 C -0.193 4.193 14 C 0.028 3.972 15 O -0.302 6.302 16 C 0.012 3.988 17 C 0.023 3.977 18 N -0.369 5.369 19 C -0.364 4.364 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.189 1.189 25 H -0.221 1.221 26 H -0.214 1.214 27 C -0.007 4.007 28 C -0.159 4.159 29 C -0.006 4.006 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.027 0.973 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.060 0.940 52 H 0.109 0.891 53 H 0.074 0.926 54 H 0.107 0.893 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.741 16.373 6.508 24.304 hybrid contribution 0.839 -0.913 -0.647 1.399 sum -15.902 15.460 5.861 22.940 Atomic orbital electron populations 1.21751 0.95060 1.01575 1.02037 1.21620 0.96951 0.96699 1.00974 1.20967 0.92309 0.96252 0.99366 0.91895 1.21915 1.01941 1.00875 0.95550 1.21533 0.97981 0.98701 0.94729 0.87502 1.21774 1.01367 0.92498 1.03919 1.21177 0.80443 0.77372 0.90168 1.90644 1.51230 1.60205 1.43754 1.48303 1.14407 1.59474 1.12374 1.21918 0.93768 0.95993 0.89349 1.22421 1.01481 0.96957 0.98473 1.22292 0.96331 0.83772 0.94809 1.87936 1.26851 1.28020 1.87386 1.24448 0.81536 0.98201 0.94573 1.22643 0.87494 0.92999 0.94531 1.46113 1.20352 1.63625 1.06771 1.19446 0.96239 1.27798 0.92923 0.89582 1.25691 1.02119 1.01662 0.96536 1.70017 1.38192 1.46062 1.05776 0.84953 0.78558 0.77357 0.78091 1.18895 1.22058 1.21434 1.22882 0.94146 0.95303 0.88398 1.21895 0.97818 0.97033 0.99182 1.21569 1.00478 0.92902 0.85617 0.93385 0.91187 0.93058 0.91961 0.94098 0.91967 0.91851 0.91187 0.92737 0.91574 0.89088 0.87364 0.89016 0.92217 0.90521 0.90635 0.88296 0.97269 0.93300 0.94111 0.91441 0.94032 0.89136 0.92583 0.89316 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.73 16 2 C -0.12 -2.37 5.18 30.60 0.16 -2.21 16 3 C -0.07 -1.14 1.60 -10.79 -0.02 -1.16 16 4 H 0.06 1.25 7.88 -2.39 -0.02 1.23 16 5 C -0.15 -1.63 8.60 71.98 0.62 -1.01 16 6 C -0.11 -1.69 1.52 -11.54 -0.02 -1.70 16 7 H 0.11 1.40 6.15 -2.39 -0.01 1.38 16 8 C -0.14 -1.60 8.61 71.98 0.62 -0.98 16 9 C 0.52 11.35 6.00 87.66 0.53 11.87 16 10 O -0.58 -16.89 14.31 -3.01 -0.04 -16.94 16 11 N -0.61 -11.94 2.97 -818.90 -2.44 -14.37 16 12 C 0.11 1.81 6.10 86.36 0.53 2.34 16 13 C -0.15 -3.51 5.70 30.69 0.18 -3.34 16 14 C 0.09 2.10 2.56 30.63 0.08 2.18 16 15 O -0.38 -12.76 10.01 -148.98 -1.49 -14.25 16 16 C 0.07 2.65 4.44 31.25 0.14 2.79 16 17 C 0.15 7.21 7.36 86.44 0.64 7.84 16 18 N -0.64 -33.54 3.70 -720.79 -2.67 -36.21 16 19 C -0.24 -13.34 10.70 84.04 0.90 -12.44 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 22 N -0.95 -57.09 11.39 21.65 0.25 -56.85 16 23 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 27 C 0.12 4.88 8.77 86.48 0.76 5.64 16 28 C -0.12 -2.63 5.73 30.67 0.18 -2.45 16 29 C 0.12 2.26 6.44 86.36 0.56 2.82 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.92 6.56 -2.39 -0.02 0.91 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 1.01 6.26 -2.39 -0.01 1.00 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.68 6.56 -2.39 -0.02 0.66 16 37 H 0.07 0.62 6.59 -2.39 -0.02 0.61 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.70 7.93 -2.39 -0.02 0.69 16 40 H 0.09 0.71 6.83 -2.39 -0.02 0.69 16 41 H 0.11 1.37 5.42 -2.39 -0.01 1.35 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 1.64 7.43 -2.38 -0.02 1.62 16 46 H 0.10 3.34 7.47 -2.39 -0.02 3.32 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.05 2.57 7.16 -2.39 -0.02 2.55 16 49 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 50 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 51 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 53 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 54 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 55 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 Total: -1.00 -71.63 417.12 3.47 -68.16 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.84 Total: 17.96 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 7.00 Total: 5.10 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.86 Total: -107.43 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.53 Total: -31.18 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.63 3.47 -68.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105730650.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.084 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds