Wall clock time and date at job start Wed Apr 1 2020 00:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47014 * 2 1 4 4 H 1.08998 * 109.47341 * 54.58542 * 3 2 1 5 5 O 1.42901 * 109.47340 * 294.58455 * 3 2 1 6 6 C 1.42900 * 114.00098 * 152.04387 * 5 3 2 7 7 C 1.54258 * 110.03174 * 269.71554 * 6 5 3 8 8 C 1.54892 * 104.19615 * 217.10688 * 7 6 5 9 9 C 1.54887 * 102.74905 * 37.94235 * 8 7 6 10 10 C 1.53879 * 110.02832 * 152.55423 * 6 5 3 11 11 C 1.50697 * 109.47209 * 174.58453 * 3 2 1 12 12 O 1.21288 * 119.99960 * 112.00171 * 11 3 2 13 13 N 1.34775 * 120.00350 * 292.00750 * 11 3 2 14 14 C 1.48112 * 127.03682 * 175.32995 * 13 11 3 15 15 C 1.54601 * 103.42323 * 219.28327 * 14 13 11 16 16 H 1.08995 * 110.57357 * 81.16750 * 15 14 13 17 17 C 1.52993 * 110.98966 * 204.37209 * 15 14 13 18 18 N 1.46493 * 109.47290 * 288.65084 * 17 15 14 19 19 C 1.36939 * 120.00078 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00267 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99813 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99804 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00119 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46756 * 90.00135 * 23 21 19 25 25 H 1.48500 * 109.47008 * 209.99718 * 23 21 19 26 26 H 1.48497 * 109.46949 * 329.99611 * 23 21 19 27 27 C 1.54624 * 102.91072 * 322.86758 * 15 14 13 28 28 H 1.08996 * 110.32348 * 262.80945 * 27 15 14 29 29 C 1.52993 * 110.41324 * 140.63635 * 27 15 14 30 30 C 1.47487 * 127.02867 * 355.63969 * 13 11 3 31 31 H 1.08996 * 109.47240 * 185.43273 * 1 2 3 32 32 H 1.09003 * 109.47226 * 305.43261 * 1 2 3 33 33 H 1.09002 * 109.47306 * 65.43157 * 1 2 3 34 34 H 1.09001 * 109.47097 * 240.00596 * 2 1 3 35 35 H 1.08994 * 109.47256 * 119.99468 * 2 1 3 36 36 H 1.08994 * 110.01619 * 31.16249 * 6 5 3 37 37 H 1.08999 * 110.49257 * 335.78449 * 7 6 5 38 38 H 1.08999 * 110.49018 * 98.43166 * 7 6 5 39 39 H 1.09004 * 110.75678 * 279.62945 * 8 7 6 40 40 H 1.09000 * 110.75882 * 156.25833 * 8 7 6 41 41 H 1.08994 * 110.48832 * 203.37487 * 9 8 7 42 42 H 1.09006 * 110.59652 * 80.79237 * 9 8 7 43 43 H 1.09002 * 110.02552 * 238.57164 * 10 6 5 44 44 H 1.08997 * 110.03767 * 359.94775 * 10 6 5 45 45 H 1.08997 * 110.66084 * 337.76262 * 14 13 11 46 46 H 1.08996 * 110.66397 * 100.88199 * 14 13 11 47 47 H 1.09008 * 109.47062 * 48.65172 * 17 15 14 48 48 H 1.09002 * 109.46850 * 168.64829 * 17 15 14 49 49 H 0.96999 * 119.99989 * 0.02562 * 18 17 15 50 50 H 0.97004 * 120.00051 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.46947 * 302.86991 * 29 27 15 52 52 H 1.08993 * 109.47350 * 62.87537 * 29 27 15 53 53 H 1.09002 * 109.46845 * 182.87371 * 29 27 15 54 54 H 1.09001 * 109.91259 * 273.87733 * 30 13 11 55 55 H 1.08996 * 109.91515 * 35.16072 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5996 1.9836 0.8375 5 8 1.6703 2.0785 -1.2251 6 6 1.5084 3.4944 -1.1193 7 6 0.0470 3.8337 -0.7605 8 6 -0.2502 5.1264 -1.5604 9 6 0.4959 4.8814 -2.8955 10 6 1.7937 4.1604 -2.4768 11 6 3.5409 1.4447 0.1341 12 8 4.2322 1.8082 -0.7939 13 7 4.1153 1.0426 1.2851 14 6 5.5639 0.8910 1.5538 15 6 5.6377 -0.3950 2.4088 16 1 5.5981 -1.2799 1.7737 17 6 6.9002 -0.4069 3.2729 18 7 8.0729 -0.6203 2.4213 19 6 9.3234 -0.6682 2.9774 20 1 9.4450 -0.5491 4.0439 21 6 10.4345 -0.8709 2.1705 22 7 11.6365 -0.9165 2.7049 23 14 10.2241 -1.0777 0.3259 24 1 10.2975 0.2512 -0.3327 25 1 11.3033 -1.9513 -0.2006 26 1 8.9042 -1.6974 0.0447 27 6 4.3715 -0.2967 3.2907 28 1 4.6219 0.1158 4.2680 29 6 3.7214 -1.6729 3.4463 30 6 3.4296 0.6573 2.5327 31 1 -0.3633 -1.0230 0.0973 32 1 -0.3634 0.5958 0.8374 33 1 -0.3634 0.4273 -0.9346 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 2.1819 3.8911 -0.3598 37 1 -0.6193 3.0299 -1.0735 38 1 -0.0506 4.0164 0.3096 39 1 0.1531 5.9995 -1.0472 40 1 -1.3210 5.2377 -1.7310 41 1 0.7258 5.8285 -3.3834 42 1 -0.0968 4.2476 -3.5552 43 1 2.6052 4.8810 -2.3758 44 1 2.0566 3.4038 -3.2161 45 1 6.1167 0.7652 0.6229 46 1 5.9425 1.7455 2.1147 47 1 6.9956 0.5480 3.7900 48 1 6.8317 -1.2113 4.0052 49 1 7.9637 -0.7269 1.4634 50 1 12.4129 -1.0586 2.1411 51 1 3.4878 -2.0778 2.4616 52 1 4.4093 -2.3435 3.9611 53 1 2.8039 -1.5777 4.0271 54 1 3.2332 1.5429 3.1371 55 1 2.4942 0.1484 2.3003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106718041.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:00 Heat of formation + Delta-G solvation = -106.199846 kcal Electronic energy + Delta-G solvation = -31042.617837 eV Core-core repulsion = 27078.194980 eV Total energy + Delta-G solvation = -3964.422856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.61396 -40.11709 -38.93781 -37.14296 -36.65660 -34.64370 -33.87508 -33.28206 -31.14099 -29.68133 -29.17915 -28.28465 -27.28325 -26.55825 -24.63184 -23.07438 -22.42447 -21.70244 -21.40627 -21.19462 -20.54979 -19.63581 -18.44715 -18.10740 -17.15623 -16.90837 -16.61748 -16.56019 -15.88756 -15.72903 -15.53813 -15.37022 -14.93624 -14.88151 -14.69070 -14.47589 -14.29723 -14.14696 -13.82904 -13.63239 -13.50650 -13.35477 -13.29071 -13.03781 -12.90322 -12.79206 -12.73863 -12.53370 -12.17827 -12.05384 -12.03708 -11.95318 -11.88317 -11.87104 -11.78055 -11.59721 -11.54822 -11.51182 -11.44354 -11.27400 -11.02278 -10.29737 -9.78340 -9.32595 -8.06882 -5.39041 1.32401 1.35189 1.40615 1.43230 1.77000 2.42651 2.59876 3.23748 3.25793 3.50403 3.56241 3.58499 3.64994 3.73759 3.84545 3.91045 3.95499 3.98736 4.14026 4.23426 4.29802 4.36072 4.44605 4.49128 4.50263 4.51889 4.56117 4.61389 4.68193 4.76714 4.77754 4.81603 4.84935 4.87499 4.90242 5.01180 5.01956 5.05156 5.06047 5.12612 5.18104 5.19484 5.21736 5.22585 5.25365 5.36886 5.41541 5.45248 5.54250 5.73168 6.11638 6.17862 6.48011 7.02972 7.04042 7.81290 7.97543 9.14599 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.002726 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.046869 B =10267.658970 C =11457.954324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.089 3.911 4 H 0.111 0.889 5 O -0.364 6.364 6 C 0.078 3.922 7 C -0.139 4.139 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.127 4.127 11 C 0.495 3.505 12 O -0.583 6.583 13 N -0.616 5.616 14 C 0.110 3.890 15 C -0.097 4.097 16 H 0.074 0.926 17 C 0.167 3.833 18 N -0.762 5.762 19 C -0.229 4.229 20 H 0.064 0.936 21 C -0.059 4.059 22 N -0.980 5.980 23 Si 0.945 3.055 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.259 1.259 27 C -0.090 4.090 28 H 0.103 0.897 29 C -0.140 4.140 30 C 0.095 3.905 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.038 0.962 49 H 0.362 0.638 50 H 0.258 0.742 51 H 0.053 0.947 52 H 0.054 0.946 53 H 0.086 0.914 54 H 0.092 0.908 55 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.862 7.233 -2.526 35.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.027 3.973 4 H 0.129 0.871 5 O -0.281 6.281 6 C 0.020 3.980 7 C -0.177 4.177 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.164 4.164 11 C 0.284 3.716 12 O -0.462 6.462 13 N -0.351 5.351 14 C -0.013 4.013 15 C -0.116 4.116 16 H 0.092 0.908 17 C 0.041 3.959 18 N -0.408 5.408 19 C -0.360 4.360 20 H 0.082 0.918 21 C -0.251 4.251 22 N -0.631 5.631 23 Si 0.773 3.227 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.183 1.183 27 C -0.110 4.110 28 H 0.121 0.879 29 C -0.198 4.198 30 C -0.026 4.026 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.194 0.806 50 H 0.067 0.933 51 H 0.072 0.928 52 H 0.073 0.927 53 H 0.105 0.895 54 H 0.110 0.890 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -34.468 7.377 -3.113 35.386 hybrid contribution 1.605 -0.012 -1.143 1.970 sum -32.863 7.365 -4.257 33.947 Atomic orbital electron populations 1.21685 0.92260 1.03068 1.02736 1.21705 0.98882 0.91310 1.03548 1.22204 0.87418 0.97911 0.89747 0.87099 1.88050 1.87812 1.20757 1.31527 1.23010 0.97004 0.80201 0.97750 1.22892 0.94679 0.98974 1.01136 1.22448 1.01189 0.96990 0.95057 1.22331 0.94908 1.00293 0.98104 1.22207 0.99094 0.98988 0.96138 1.22003 0.92747 0.76350 0.80492 1.90704 1.66088 1.49170 1.40266 1.48995 1.07841 1.65521 1.12731 1.22343 0.81865 0.98191 0.98895 1.22400 0.95369 0.96813 0.97054 0.90762 1.20797 0.83920 0.98663 0.92531 1.42829 1.03057 1.88921 1.05946 1.19062 0.83846 1.39629 0.93446 0.91768 1.25390 0.94947 1.02918 1.01871 1.69855 0.98269 1.58940 1.36067 0.85557 0.77634 0.77745 0.81728 1.21157 1.21804 1.18348 1.22088 0.92411 0.97406 0.99060 0.87888 1.21850 1.01330 0.94358 1.02223 1.22707 0.96826 0.99495 0.83602 0.90959 0.90792 0.92860 0.92612 0.88188 0.93378 0.89982 0.90031 0.90928 0.89603 0.90625 0.91177 0.91856 0.92384 0.93479 0.90858 0.94936 0.94397 0.80594 0.93319 0.92773 0.92730 0.89477 0.88971 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.76 71.98 0.70 -0.73 16 2 C -0.12 -1.79 5.43 30.59 0.17 -1.63 16 3 C 0.09 1.75 1.71 29.85 0.05 1.80 16 4 H 0.11 1.51 7.79 -2.39 -0.02 1.49 16 5 O -0.36 -8.60 8.75 -130.06 -1.14 -9.74 16 6 C 0.08 1.55 3.14 31.32 0.10 1.65 16 7 C -0.14 -1.76 6.54 31.67 0.21 -1.55 16 8 C -0.12 -1.30 6.91 31.89 0.22 -1.08 16 9 C -0.12 -1.66 6.83 31.66 0.22 -1.45 16 10 C -0.13 -2.59 6.61 31.32 0.21 -2.39 16 11 C 0.49 14.21 7.08 87.66 0.62 14.83 16 12 O -0.58 -23.25 16.76 15.86 0.27 -22.98 16 13 N -0.62 -15.33 3.29 -810.09 -2.67 -18.00 16 14 C 0.11 3.39 6.43 86.61 0.56 3.95 16 15 C -0.10 -2.67 2.60 -9.70 -0.03 -2.70 16 16 H 0.07 2.21 7.86 -2.39 -0.02 2.19 16 17 C 0.17 5.97 5.58 86.38 0.48 6.45 16 18 N -0.76 -36.08 5.33 -343.47 -1.83 -37.91 16 19 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 20 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 21 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 22 N -0.98 -63.84 13.97 21.65 0.30 -63.54 16 23 Si 0.95 47.93 27.74 68.60 1.90 49.84 16 24 H -0.28 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 26 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 27 C -0.09 -1.57 3.17 -9.90 -0.03 -1.60 16 28 H 0.10 1.60 7.85 -2.39 -0.02 1.58 16 29 C -0.14 -1.95 8.90 71.98 0.64 -1.31 16 30 C 0.09 1.41 6.23 86.53 0.54 1.95 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.68 7.98 -2.39 -0.02 0.66 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.10 1.19 5.56 -2.39 -0.01 1.18 16 36 H 0.05 1.05 7.80 -2.39 -0.02 1.03 16 37 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 45 H 0.05 1.78 7.89 -2.39 -0.02 1.76 16 46 H 0.07 2.28 7.94 -2.39 -0.02 2.26 16 47 H 0.03 1.17 8.00 -2.38 -0.02 1.15 16 48 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.36 17.01 5.53 -92.71 -0.51 16.50 16 50 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 51 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 54 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 55 H 0.11 1.01 4.82 -2.39 -0.01 1.00 16 Total: -1.00 -79.44 424.86 3.10 -76.33 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.27 Total: 25.23 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 6.00 Total: 0.77 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -4.19 Total: -119.45 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.87 Total: -32.72 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.90 Total: 49.84 kcal Total: -79.44 3.10 -76.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106718041.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.866 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds