Wall clock time and date at job start Tue Mar 31 2020 21:56:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.47041 * 2 1
4 4 H 1.09002 * 109.47174 * 54.99800 * 3 2 1
5 5 C 1.53000 * 109.47352 * 175.00210 * 3 2 1
6 6 C 1.53000 * 109.47352 * 179.97438 * 5 3 2
7 7 C 1.52997 * 109.47205 * 299.99624 * 6 5 3
8 8 H 1.08997 * 109.46991 * 300.00544 * 7 6 5
9 9 C 1.50697 * 109.47043 * 179.97438 * 7 6 5
10 10 O 1.21277 * 120.00016 * 359.97438 * 9 7 6
11 11 N 1.34782 * 119.99653 * 180.02562 * 9 7 6
12 12 C 1.46494 * 119.99563 * 180.02562 * 11 9 7
13 13 C 1.53006 * 109.46908 * 179.97438 * 12 11 9
14 14 C 1.53003 * 109.51106 * 59.99874 * 13 12 11
15 15 C 1.53295 * 109.51247 * 180.09820 * 13 12 11
16 16 N 1.47166 * 108.37550 * 172.17157 * 15 13 12
17 17 C 1.36945 * 120.94022 * 129.48426 * 16 15 13
18 18 H 1.08001 * 120.00215 * 206.29929 * 17 16 15
19 19 C 1.38811 * 119.99802 * 26.30055 * 17 16 15
20 20 N 1.31615 * 120.00064 * 16.88466 * 19 17 16
21 21 Si 1.86800 * 119.99886 * 196.89301 * 19 17 16
22 22 H 1.48500 * 109.47462 * 89.99509 * 21 19 17
23 23 H 1.48501 * 109.46974 * 209.99821 * 21 19 17
24 24 H 1.48508 * 109.46933 * 329.99492 * 21 19 17
25 25 C 1.47146 * 118.07986 * 309.55149 * 16 15 13
26 26 C 1.53299 * 108.38358 * 50.49764 * 25 16 15
27 27 O 1.42958 * 109.51221 * 299.89792 * 13 12 11
28 28 C 1.53005 * 109.46975 * 59.99947 * 7 6 5
29 29 C 1.53000 * 109.47198 * 300.00058 * 28 7 6
30 30 H 1.08998 * 109.47052 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47186 * 299.99913 * 1 2 3
32 32 H 1.09003 * 109.47108 * 59.99789 * 1 2 3
33 33 H 1.08998 * 109.47186 * 240.00087 * 2 1 3
34 34 H 1.08992 * 109.46979 * 119.99687 * 2 1 3
35 35 H 1.09002 * 109.47316 * 59.99677 * 5 3 2
36 36 H 1.09008 * 109.46527 * 300.00226 * 5 3 2
37 37 H 1.09003 * 109.46800 * 179.97438 * 6 5 3
38 38 H 1.09004 * 109.47014 * 60.00105 * 6 5 3
39 39 H 0.97000 * 120.00071 * 359.97438 * 11 9 7
40 40 H 1.08997 * 109.47581 * 299.99691 * 12 11 9
41 41 H 1.08997 * 109.47726 * 59.99977 * 12 11 9
42 42 H 1.08997 * 109.46970 * 60.00228 * 14 13 12
43 43 H 1.08995 * 109.46926 * 180.02562 * 14 13 12
44 44 H 1.08994 * 109.47361 * 300.00118 * 14 13 12
45 45 H 1.08999 * 109.68496 * 291.95380 * 15 13 12
46 46 H 1.09005 * 109.68340 * 52.50755 * 15 13 12
47 47 H 0.97003 * 120.00398 * 179.97438 * 20 19 17
48 48 H 1.09001 * 109.68526 * 290.77443 * 25 16 15
49 49 H 1.09004 * 109.68506 * 170.21944 * 25 16 15
50 50 H 1.09002 * 109.50992 * 187.77164 * 26 25 16
51 51 H 1.09008 * 109.50969 * 67.62443 * 26 25 16
52 52 H 1.09004 * 109.46813 * 59.99783 * 28 7 6
53 53 H 1.08996 * 109.47237 * 179.97438 * 28 7 6
54 54 H 1.09002 * 109.47174 * 300.00117 * 29 28 7
55 55 H 1.08998 * 109.47017 * 179.97438 * 29 28 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8418
5 6 3.5648 1.4444 0.1257
6 6 4.0749 2.8869 0.1250
7 6 3.6702 3.5704 -1.1826
8 1 4.1047 3.0309 -2.0241
9 6 4.1720 4.9913 -1.1829
10 8 4.7919 5.4157 -0.2308
11 7 3.9310 5.7908 -2.2409
12 6 4.4194 7.1720 -2.2415
13 6 4.0145 7.8555 -3.5491
14 6 2.4898 7.8541 -3.6758
15 6 4.5272 9.3002 -3.5518
16 7 4.2924 9.8733 -4.8868
17 6 3.6668 11.0827 -5.0338
18 1 3.1269 11.3045 -5.9424
19 6 3.7267 12.0234 -4.0148
20 7 4.6331 11.9103 -3.0672
21 14 2.5206 13.4496 -3.9883
22 1 1.3104 13.0603 -3.2207
23 1 3.1587 14.6255 -3.3437
24 1 2.1341 13.7968 -5.3795
25 6 4.7478 9.1088 -6.0587
26 6 4.2233 7.6738 -5.9333
27 8 4.5861 7.1501 -4.6535
28 6 2.1453 3.5685 -1.3084
29 6 1.6353 2.1260 -1.3077
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 3.9995 0.9054 -0.7161
36 1 3.8532 0.9570 1.0571
37 1 5.1612 2.8882 0.2150
38 1 3.6403 3.4263 0.9667
39 1 3.4350 5.4514 -3.0023
40 1 3.9851 7.7113 -1.3997
41 1 5.5057 7.1734 -2.1524
42 1 2.0549 8.3936 -2.8344
43 1 2.2022 8.3407 -4.6077
44 1 2.1261 6.8266 -3.6756
45 1 3.9905 9.8816 -2.8021
46 1 5.5946 9.3114 -3.3309
47 1 4.6753 12.5679 -2.3553
48 1 5.8373 9.0999 -6.0905
49 1 4.3571 9.5642 -6.9687
50 1 4.6619 7.0561 -6.7171
51 1 3.1378 7.6729 -6.0327
52 1 1.7107 4.1079 -0.4667
53 1 1.8569 4.0558 -2.2397
54 1 2.0699 1.5866 -2.1493
55 1 0.5489 2.1247 -1.3968
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001108355187.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:56:02
Heat of formation + Delta-G solvation = -110.839886 kcal
Electronic energy + Delta-G solvation = -31092.776524 eV
Core-core repulsion = 27128.152461 eV
Total energy + Delta-G solvation = -3964.624064 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 2.90 seconds
Orbital eigenvalues (eV)
-41.41346 -40.51861 -39.06355 -36.54966 -35.92399 -34.85191 -33.26360 -33.13153
-31.64870 -30.22339 -29.57066 -28.05698 -27.29386 -25.10146 -24.91303 -23.55618
-23.00421 -22.15012 -21.04074 -20.65244 -20.23428 -18.95631 -18.28491 -17.45590
-16.96780 -16.86609 -16.33610 -16.11104 -15.86243 -15.57725 -15.51849 -15.30648
-15.09111 -14.89092 -14.66803 -14.59865 -14.35293 -14.16796 -13.78035 -13.63474
-13.37968 -13.17480 -13.02962 -12.93477 -12.80244 -12.72400 -12.53665 -12.46186
-12.41847 -12.13589 -12.09886 -11.97863 -11.96106 -11.84824 -11.61347 -11.33709
-11.21079 -11.12907 -10.81904 -10.78979 -10.59590 -10.50206 -10.08816 -8.72678
-7.90233 -5.37291 1.45542 1.46809 1.55587 1.66060 2.17765 2.47950
2.79084 3.24284 3.49919 3.61629 3.73198 3.79360 3.91778 4.01519
4.08731 4.10823 4.16674 4.25639 4.42130 4.44271 4.46725 4.48377
4.56496 4.58278 4.61231 4.63086 4.67759 4.71342 4.77446 4.79836
4.84292 4.96462 4.98104 5.04669 5.08925 5.12361 5.18651 5.20566
5.22525 5.25134 5.29153 5.31979 5.35508 5.37851 5.41482 5.44563
5.52822 5.59387 5.61054 5.67669 6.28733 6.36970 6.58750 7.06153
7.27624 7.75678 8.29573 9.15383
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.018549 B = 0.002345 C = 0.002325
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1509.149443 B =11939.370935 C =12037.925822
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.116 4.116
3 C -0.089 4.089
4 H 0.060 0.940
5 C -0.107 4.107
6 C -0.097 4.097
7 C -0.095 4.095
8 H 0.117 0.883
9 C 0.508 3.492
10 O -0.591 6.591
11 N -0.704 5.704
12 C 0.149 3.851
13 C 0.095 3.905
14 C -0.152 4.152
15 C 0.167 3.833
16 N -0.607 5.607
17 C -0.258 4.258
18 H 0.075 0.925
19 C -0.051 4.051
20 N -0.937 5.937
21 Si 0.967 3.033
22 H -0.284 1.284
23 H -0.299 1.299
24 H -0.266 1.266
25 C 0.101 3.899
26 C 0.053 3.947
27 O -0.384 6.384
28 C -0.108 4.108
29 C -0.108 4.108
30 H 0.056 0.944
31 H 0.048 0.952
32 H 0.059 0.941
33 H 0.068 0.932
34 H 0.060 0.940
35 H 0.074 0.926
36 H 0.067 0.933
37 H 0.054 0.946
38 H 0.050 0.950
39 H 0.414 0.586
40 H 0.068 0.932
41 H 0.050 0.950
42 H 0.053 0.947
43 H 0.062 0.938
44 H 0.079 0.921
45 H 0.066 0.934
46 H -0.010 1.010
47 H 0.250 0.750
48 H 0.011 0.989
49 H 0.072 0.928
50 H 0.118 0.882
51 H 0.062 0.938
52 H 0.055 0.945
53 H 0.079 0.921
54 H 0.076 0.924
55 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.744 -25.150 0.921 26.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.153 4.153
3 C -0.108 4.108
4 H 0.079 0.921
5 C -0.144 4.144
6 C -0.135 4.135
7 C -0.116 4.116
8 H 0.135 0.865
9 C 0.296 3.704
10 O -0.472 6.472
11 N -0.357 5.357
12 C 0.024 3.976
13 C 0.054 3.946
14 C -0.209 4.209
15 C 0.040 3.960
16 N -0.331 5.331
17 C -0.388 4.388
18 H 0.092 0.908
19 C -0.247 4.247
20 N -0.583 5.583
21 Si 0.795 3.205
22 H -0.210 1.210
23 H -0.226 1.226
24 H -0.190 1.190
25 C -0.024 4.024
26 C -0.024 4.024
27 O -0.304 6.304
28 C -0.146 4.146
29 C -0.145 4.145
30 H 0.075 0.925
31 H 0.067 0.933
32 H 0.078 0.922
33 H 0.086 0.914
34 H 0.079 0.921
35 H 0.093 0.907
36 H 0.086 0.914
37 H 0.072 0.928
38 H 0.068 0.932
39 H 0.252 0.748
40 H 0.086 0.914
41 H 0.068 0.932
42 H 0.072 0.928
43 H 0.081 0.919
44 H 0.098 0.902
45 H 0.084 0.916
46 H 0.008 0.992
47 H 0.059 0.941
48 H 0.029 0.971
49 H 0.091 0.909
50 H 0.136 0.864
51 H 0.080 0.920
52 H 0.073 0.927
53 H 0.097 0.903
54 H 0.095 0.905
55 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -8.163 -24.870 1.692 26.230
hybrid contribution -0.161 1.809 0.075 1.818
sum -8.324 -23.061 1.767 24.581
Atomic orbital electron populations
1.21835 0.95778 1.01735 1.01914 1.21532 0.95974 0.95590 1.02252
1.21217 0.95020 0.96425 0.98100 0.92134 1.21573 0.95521 0.94656
1.02686 1.21301 1.00460 0.96290 0.95479 1.21370 0.98516 0.89993
1.01709 0.86527 1.21464 0.78499 0.89052 0.81349 1.90675 1.42965
1.77125 1.36433 1.45847 1.57190 1.11777 1.20842 1.20987 0.98741
0.82499 0.95404 1.22158 0.94024 0.92362 0.86028 1.22097 0.93810
1.02169 1.02828 1.21061 0.95963 0.90354 0.88605 1.44255 1.68256
1.19673 1.00909 1.19521 1.24418 0.91567 1.03245 0.90771 1.25808
0.99455 1.00168 0.99234 1.70187 1.34580 1.37690 1.15872 0.85271
0.78583 0.78548 0.78097 1.21042 1.22588 1.19037 1.21828 0.96331
0.93181 0.91058 1.23116 1.00091 0.94295 0.84945 1.87822 1.73047
1.55208 1.14311 1.21544 0.91467 0.98916 1.02647 1.21612 1.01407
0.93663 0.97815 0.92513 0.93256 0.92150 0.91360 0.92076 0.90744
0.91394 0.92763 0.93161 0.74837 0.91400 0.93177 0.92830 0.91934
0.90248 0.91584 0.99183 0.94108 0.97083 0.90917 0.86377 0.91990
0.92651 0.90271 0.90495 0.90522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.49 9.67 71.98 0.70 -0.80 16
2 C -0.12 -1.16 5.40 30.60 0.17 -0.99 16
3 C -0.09 -1.09 2.19 -10.79 -0.02 -1.11 16
4 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16
5 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16
6 C -0.10 -1.94 4.49 30.59 0.14 -1.80 16
7 C -0.09 -1.82 2.53 -11.54 -0.03 -1.85 16
8 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16
9 C 0.51 14.55 7.15 87.66 0.63 15.18 16
10 O -0.59 -22.58 15.98 -3.02 -0.05 -22.62 16
11 N -0.70 -19.39 5.04 -463.07 -2.34 -21.73 16
12 C 0.15 5.26 4.82 86.38 0.42 5.67 16
13 C 0.10 3.50 0.76 -10.69 -0.01 3.50 16
14 C -0.15 -4.87 7.92 71.98 0.57 -4.30 16
15 C 0.17 8.08 4.11 86.35 0.36 8.44 16
16 N -0.61 -29.73 2.57 -697.49 -1.79 -31.52 16
17 C -0.26 -13.71 9.65 84.03 0.81 -12.90 16
18 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16
19 C -0.05 -2.83 4.94 84.86 0.42 -2.41 16
20 N -0.94 -55.58 11.14 21.65 0.24 -55.34 16
21 Si 0.97 44.23 29.59 68.60 2.03 46.26 16
22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16
24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16
25 C 0.10 4.04 6.74 86.36 0.58 4.62 16
26 C 0.05 1.64 6.60 72.08 0.48 2.12 16
27 O -0.38 -13.28 9.98 -148.98 -1.49 -14.76 16
28 C -0.11 -1.64 5.10 30.60 0.16 -1.48 16
29 C -0.11 -1.21 4.96 30.60 0.15 -1.06 16
30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16
31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16
32 H 0.06 0.55 6.56 -2.39 -0.02 0.53 16
33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16
37 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16
38 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16
39 H 0.41 9.16 6.62 -92.71 -0.61 8.55 16
40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16
41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
43 H 0.06 2.17 6.11 -2.39 -0.01 2.16 16
44 H 0.08 1.95 6.87 -2.39 -0.02 1.93 16
45 H 0.07 3.59 6.14 -2.39 -0.01 3.57 16
46 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16
47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16
48 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16
49 H 0.07 2.69 7.96 -2.38 -0.02 2.67 16
50 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16
51 H 0.06 1.80 6.25 -2.38 -0.01 1.79 16
52 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16
53 H 0.08 1.03 7.56 -2.39 -0.02 1.02 16
54 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
55 H 0.08 0.77 6.56 -2.39 -0.02 0.76 16
Total: -1.00 -68.80 411.15 2.50 -66.30
By element:
Atomic # 1 Polarization: 23.66 SS G_CDS: 0.24 Total: 23.90 kcal
Atomic # 6 Polarization: 3.87 SS G_CDS: 5.66 Total: 9.53 kcal
Atomic # 7 Polarization: -104.70 SS G_CDS: -3.89 Total: -108.59 kcal
Atomic # 8 Polarization: -35.85 SS G_CDS: -1.53 Total: -37.39 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal
Total: -68.80 2.50 -66.30 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108355187.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.541 kcal
(2) G-P(sol) polarization free energy of solvation -68.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.299 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.90 seconds