Wall clock time and date at job start Tue Mar 31 2020 23:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47758 * 2 1 4 4 H 1.09002 * 109.46856 * 54.99424 * 3 2 1 5 5 C 1.53001 * 109.46963 * 294.99997 * 3 2 1 6 6 C 1.52992 * 109.47883 * 174.99762 * 3 2 1 7 7 C 1.50699 * 109.47656 * 184.99932 * 6 3 2 8 8 O 1.21277 * 119.99589 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00215 * 180.02562 * 7 6 3 10 10 C 1.47147 * 120.98759 * 359.71987 * 9 7 6 11 11 C 1.52844 * 108.62280 * 230.52539 * 10 9 7 12 12 H 1.09009 * 109.35050 * 67.79298 * 11 10 9 13 13 C 1.52995 * 109.63066 * 187.86750 * 11 10 9 14 14 O 1.42963 * 109.30927 * 307.91841 * 11 10 9 15 15 C 1.42896 * 114.21064 * 62.34127 * 14 11 10 16 16 C 1.52987 * 109.56419 * 57.46988 * 15 14 11 17 17 C 1.53200 * 109.34587 * 59.04340 * 16 15 14 18 18 N 1.46931 * 108.77572 * 54.57365 * 17 16 15 19 19 C 1.36936 * 120.63870 * 126.34920 * 18 17 16 20 20 H 1.07993 * 119.99801 * 207.66293 * 19 18 17 21 21 C 1.38812 * 120.00084 * 27.66385 * 19 18 17 22 22 N 1.31624 * 120.00262 * 17.38303 * 21 19 18 23 23 Si 1.86795 * 120.00069 * 197.37953 * 21 19 18 24 24 H 1.48499 * 109.47226 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47318 * 120.00298 * 23 21 19 26 26 H 1.48500 * 109.47287 * 239.99774 * 23 21 19 27 27 C 1.46921 * 118.71618 * 306.32907 * 18 17 16 28 28 C 1.53001 * 109.54846 * 177.77095 * 15 14 11 29 29 C 1.47155 * 120.98709 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.46589 * 60.00322 * 1 2 3 31 31 H 1.08995 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47320 * 300.00567 * 1 2 3 33 33 H 1.09003 * 109.47302 * 239.99178 * 2 1 3 34 34 H 1.09005 * 109.47201 * 120.00069 * 2 1 3 35 35 H 1.08995 * 109.47409 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47049 * 299.99935 * 5 3 2 37 37 H 1.09004 * 109.47379 * 59.99132 * 5 3 2 38 38 H 1.09004 * 109.47007 * 304.99965 * 6 3 2 39 39 H 1.09001 * 109.46937 * 64.99611 * 6 3 2 40 40 H 1.09006 * 109.68723 * 350.30563 * 10 9 7 41 41 H 1.08998 * 109.68832 * 110.86354 * 10 9 7 42 42 H 1.09004 * 109.46855 * 179.97438 * 13 11 10 43 43 H 1.08999 * 109.47281 * 299.92225 * 13 11 10 44 44 H 1.08994 * 109.47106 * 59.92661 * 13 11 10 45 45 H 1.08995 * 109.49208 * 179.00535 * 16 15 14 46 46 H 1.08998 * 109.49069 * 299.08743 * 16 15 14 47 47 H 1.09004 * 109.58560 * 294.78520 * 17 16 15 48 48 H 1.09004 * 109.58268 * 174.36387 * 17 16 15 49 49 H 0.96999 * 120.00519 * 180.02562 * 22 21 19 50 50 H 1.08999 * 109.58792 * 293.88225 * 27 18 17 51 51 H 1.09001 * 109.58116 * 173.46187 * 27 18 17 52 52 H 1.09000 * 109.48927 * 60.91936 * 28 15 14 53 53 H 1.08999 * 109.48719 * 180.98823 * 28 15 14 54 54 H 1.09003 * 109.67652 * 249.25216 * 29 9 7 55 55 H 1.09002 * 109.67573 * 9.75496 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 6 4.0571 2.8632 0.2493 8 8 3.2662 3.7826 0.2373 9 7 5.3763 3.1107 0.3719 10 6 6.3544 2.0116 0.3939 11 6 7.2703 2.1974 1.6033 12 1 6.6969 2.0442 2.5176 13 6 8.4148 1.1839 1.5419 14 8 7.8053 3.5231 1.5918 15 6 6.8211 4.5532 1.7022 16 6 6.0133 4.3545 2.9861 17 6 6.9584 4.3921 4.1913 18 7 7.7285 5.6428 4.1495 19 6 7.7530 6.4837 5.2300 20 1 7.9107 7.5424 5.0867 21 6 7.5751 5.9753 6.5093 22 7 7.7240 4.6866 6.7320 23 14 7.1246 7.1200 7.9150 24 1 7.0167 8.5107 7.4057 25 1 5.8225 6.7033 8.4948 26 1 8.1757 7.0558 8.9620 27 6 8.4720 5.9734 2.9262 28 6 7.5106 5.9187 1.7349 29 6 5.8807 4.4876 0.4945 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5140 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.9984 3.1542 -1.3073 36 1 2.0700 1.5874 -2.1492 37 1 0.5491 2.1251 -1.3971 38 1 3.8571 0.8800 1.0114 39 1 4.0030 0.9834 -0.7596 40 1 5.8331 1.0575 0.4731 41 1 6.9490 2.0308 -0.5194 42 1 9.0665 1.3191 2.4052 43 1 8.0062 0.1735 1.5508 44 1 8.9866 1.3366 0.6267 45 1 5.2748 5.1508 3.0781 46 1 5.5066 3.3901 2.9514 47 1 7.6394 3.5421 4.1484 48 1 6.3773 4.3513 5.1127 49 1 7.5994 4.3312 7.6259 50 1 9.2757 5.2516 2.7807 51 1 8.8901 6.9763 3.0126 52 1 8.0684 6.0666 0.8102 53 1 6.7602 6.7026 1.8367 54 1 6.4250 4.7610 -0.4095 55 1 5.0456 5.1726 0.6413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111541971.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:38 Heat of formation + Delta-G solvation = -89.723805 kcal Electronic energy + Delta-G solvation = -32242.398214 eV Core-core repulsion = 28278.689812 eV Total energy + Delta-G solvation = -3963.708402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.91617 -40.27412 -38.02547 -37.25427 -35.74095 -35.13566 -33.22401 -31.90598 -31.69540 -31.16740 -29.31640 -28.05522 -27.21441 -25.94980 -24.65636 -24.17023 -23.11224 -22.16630 -20.98626 -20.52494 -19.87798 -18.89464 -18.16816 -17.34726 -17.05900 -16.81053 -16.66934 -16.16885 -15.90637 -15.67429 -15.36434 -15.23285 -15.12239 -14.85863 -14.84823 -14.55044 -14.06509 -13.82605 -13.59303 -13.33901 -13.26742 -13.11290 -13.09729 -12.91923 -12.84793 -12.77113 -12.70580 -12.64963 -12.55641 -12.23411 -12.18885 -12.01161 -11.91418 -11.75598 -11.70311 -11.54444 -11.41307 -11.39201 -11.24813 -10.79176 -10.59458 -10.53718 -9.48522 -8.68581 -7.88942 -5.33464 1.43144 1.45161 1.55805 1.61353 1.90283 2.48906 2.71748 3.25212 3.46473 3.60695 3.69665 3.79908 3.84816 3.90123 3.95333 3.99354 4.13890 4.20380 4.26634 4.40793 4.43982 4.44744 4.49190 4.59300 4.62642 4.66918 4.67690 4.69297 4.72434 4.78589 4.83105 4.84342 4.91471 4.93444 4.96453 5.04617 5.12202 5.14564 5.16097 5.17425 5.24625 5.31122 5.32841 5.34910 5.38462 5.45793 5.53077 5.60126 5.62655 5.69470 6.35674 6.37556 6.39905 7.13133 7.16004 7.84900 8.37787 9.17579 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.003192 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.831422 B = 8769.261954 C = 9548.190990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.077 4.077 4 H 0.049 0.951 5 C -0.149 4.149 6 C -0.130 4.130 7 C 0.508 3.492 8 O -0.578 6.578 9 N -0.615 5.615 10 C 0.084 3.916 11 C 0.060 3.940 12 H 0.043 0.957 13 C -0.134 4.134 14 O -0.373 6.373 15 C 0.126 3.874 16 C -0.143 4.143 17 C 0.196 3.804 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.067 0.933 21 C -0.053 4.053 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.150 3.850 28 C -0.110 4.110 29 C 0.098 3.902 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.055 0.945 47 H -0.002 1.002 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.016 0.984 51 H 0.055 0.945 52 H 0.091 0.909 53 H 0.071 0.929 54 H 0.087 0.913 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 -12.996 -19.035 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.096 4.096 4 H 0.068 0.932 5 C -0.206 4.206 6 C -0.170 4.170 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.348 5.348 10 C -0.038 4.038 11 C 0.001 3.999 12 H 0.061 0.939 13 C -0.191 4.191 14 O -0.293 6.293 15 C 0.085 3.915 16 C -0.182 4.182 17 C 0.070 3.930 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.248 4.248 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.024 3.976 28 C -0.149 4.149 29 C -0.026 4.026 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.016 0.984 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.073 0.927 52 H 0.109 0.891 53 H 0.090 0.910 54 H 0.105 0.895 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.221 -12.541 -18.930 23.827 hybrid contribution -0.364 0.792 1.526 1.757 sum -7.585 -11.749 -17.404 22.326 Atomic orbital electron populations 1.21825 0.95877 1.01994 1.01596 1.21551 0.96074 0.94459 1.03010 1.20906 0.92973 0.97124 0.98564 0.93234 1.21924 1.01361 1.00624 0.96710 1.21868 0.97474 0.91571 1.06055 1.21446 0.80967 0.93021 0.74692 1.90649 1.54909 1.48342 1.51858 1.48289 1.06574 1.07496 1.72400 1.22589 0.91042 0.90741 0.99416 1.22560 0.96418 0.83840 0.97034 0.93880 1.21691 0.96906 0.97641 1.02907 1.87985 1.33116 1.14193 1.93992 1.21514 0.88314 0.89199 0.92439 1.22443 0.98436 1.00101 0.97222 1.20295 0.91406 0.86721 0.94550 1.44307 1.54173 1.22601 1.12196 1.19567 1.44039 0.89892 0.85652 0.91505 1.25793 1.01962 0.97379 0.99650 1.70202 1.53674 1.13376 1.20774 0.85232 0.77076 0.79020 0.79298 1.19076 1.21864 1.21690 1.20891 0.92774 0.98035 0.85877 1.21885 0.99629 0.93670 0.99727 1.22152 0.97795 0.84361 0.98247 0.92507 0.91705 0.93771 0.90295 0.91292 0.93725 0.91794 0.92490 0.87276 0.85941 0.85775 0.88603 0.93677 0.88013 0.90562 0.93562 0.92638 0.98357 0.93684 0.94212 0.96553 0.92652 0.89069 0.91030 0.89468 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.67 71.98 0.70 -1.37 16 2 C -0.11 -1.44 5.40 30.59 0.17 -1.28 16 3 C -0.08 -1.39 2.04 -10.80 -0.02 -1.41 16 4 H 0.05 1.18 7.96 -2.39 -0.02 1.16 16 5 C -0.15 -2.85 8.69 71.98 0.63 -2.22 16 6 C -0.13 -2.14 3.55 29.85 0.11 -2.03 16 7 C 0.51 13.08 7.43 87.66 0.65 13.73 16 8 O -0.58 -19.71 13.43 -3.02 -0.04 -19.75 16 9 N -0.61 -15.16 2.53 -818.39 -2.07 -17.24 16 10 C 0.08 1.53 5.80 86.20 0.50 2.03 16 11 C 0.06 1.52 3.00 30.54 0.09 1.61 16 12 H 0.04 1.31 6.29 -2.38 -0.01 1.29 16 13 C -0.13 -2.65 9.57 71.98 0.69 -1.96 16 14 O -0.37 -12.32 8.64 -148.98 -1.29 -13.60 16 15 C 0.13 4.26 0.68 -10.73 -0.01 4.25 16 16 C -0.14 -5.84 4.33 30.66 0.13 -5.70 16 17 C 0.20 9.96 5.08 86.36 0.44 10.40 16 18 N -0.61 -31.94 2.99 -699.09 -2.09 -34.03 16 19 C -0.26 -14.88 9.59 84.03 0.81 -14.08 16 20 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 21 C -0.05 -3.03 4.91 84.86 0.42 -2.62 16 22 N -0.93 -56.78 11.19 21.65 0.24 -56.53 16 23 Si 0.97 46.24 29.59 68.60 2.03 48.27 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 C 0.15 6.48 6.28 86.36 0.54 7.02 16 28 C -0.11 -3.80 5.10 30.66 0.16 -3.65 16 29 C 0.10 2.82 5.29 86.32 0.46 3.28 16 30 H 0.06 0.75 6.56 -2.39 -0.02 0.73 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.04 1.13 5.95 -2.39 -0.01 1.12 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.02 6.57 -2.38 -0.02 1.00 16 38 H 0.11 1.47 7.65 -2.38 -0.02 1.45 16 39 H 0.12 1.28 8.02 -2.39 -0.02 1.26 16 40 H 0.12 1.39 6.06 -2.38 -0.01 1.38 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 2.15 6.15 -2.39 -0.01 2.14 16 47 H 0.00 -0.09 7.83 -2.38 -0.02 -0.11 16 48 H 0.04 2.61 6.03 -2.38 -0.01 2.60 16 49 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 50 H 0.02 0.75 7.83 -2.39 -0.02 0.73 16 51 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 52 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 53 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 54 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 55 H 0.08 2.60 7.07 -2.39 -0.02 2.58 16 Total: -1.00 -73.43 406.03 4.07 -69.36 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.84 Total: 17.53 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.44 Total: 5.99 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -3.92 Total: -107.80 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.33 Total: -33.35 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -73.43 4.07 -69.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111541971.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.363 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds