Wall clock time and date at job start Tue Mar 31 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 H 1.09000 * 109.48046 * 55.02007 * 3 2 1 5 5 C 1.53100 * 109.49230 * 174.96641 * 3 2 1 6 6 C 1.53176 * 109.15823 * 177.51269 * 5 3 2 7 7 H 1.09003 * 109.54791 * 63.05406 * 6 5 3 8 8 C 1.50695 * 109.54570 * 183.23990 * 6 5 3 9 9 O 1.21284 * 119.99969 * 359.81488 * 8 6 5 10 10 N 1.34781 * 120.00287 * 179.82125 * 8 6 5 11 11 C 1.46497 * 120.00185 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47146 * 177.65724 * 11 10 8 13 13 N 1.46494 * 109.47442 * 54.61773 * 12 11 10 14 14 C 1.36935 * 120.00231 * 59.73194 * 13 12 11 15 15 H 1.08004 * 119.99642 * 4.91963 * 14 13 12 16 16 C 1.38811 * 120.00464 * 184.91984 * 14 13 12 17 17 N 1.31610 * 120.00208 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99777 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47052 * 89.99809 * 18 16 14 20 20 H 1.48497 * 109.47397 * 210.00020 * 18 16 14 21 21 H 1.48508 * 109.47285 * 330.00269 * 18 16 14 22 22 C 1.52994 * 109.47108 * 174.62236 * 12 11 10 23 23 C 1.53002 * 109.47357 * 179.97438 * 22 12 11 24 24 C 1.53004 * 109.46749 * 299.99775 * 23 22 12 25 25 C 1.53000 * 109.47307 * 60.00045 * 24 23 22 26 26 C 1.53004 * 109.46632 * 294.61786 * 12 11 10 27 27 C 1.53186 * 109.10495 * 303.14857 * 6 5 3 28 28 C 1.53093 * 109.16348 * 56.93900 * 27 6 5 29 29 O 1.42904 * 109.41242 * 302.38973 * 28 27 6 30 30 H 1.08998 * 109.47214 * 60.00019 * 1 2 3 31 31 H 1.09004 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46736 * 299.99853 * 1 2 3 33 33 H 1.09005 * 109.46960 * 240.00165 * 2 1 3 34 34 H 1.08997 * 109.47630 * 120.00314 * 2 1 3 35 35 H 1.09000 * 109.45873 * 57.64846 * 5 3 2 36 36 H 1.08999 * 109.59665 * 297.45412 * 5 3 2 37 37 H 0.96999 * 119.99613 * 359.97438 * 10 8 6 38 38 H 1.09004 * 109.47228 * 57.65230 * 11 10 8 39 39 H 1.09002 * 109.46873 * 297.65048 * 11 10 8 40 40 H 0.97004 * 119.99878 * 239.73573 * 13 12 11 41 41 H 0.97002 * 120.00157 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46765 * 299.99327 * 22 12 11 43 43 H 1.09003 * 109.47594 * 59.99619 * 22 12 11 44 44 H 1.08995 * 109.47491 * 179.97438 * 23 22 12 45 45 H 1.09003 * 109.46837 * 59.99452 * 23 22 12 46 46 H 1.08993 * 109.47200 * 299.99667 * 24 23 22 47 47 H 1.09007 * 109.46878 * 179.97438 * 24 23 22 48 48 H 1.08991 * 109.47310 * 179.97438 * 25 24 23 49 49 H 1.09003 * 109.47473 * 59.99592 * 25 24 23 50 50 H 1.09003 * 109.47187 * 299.99840 * 26 12 11 51 51 H 1.08995 * 109.47454 * 59.99950 * 26 12 11 52 52 H 1.08998 * 109.51787 * 176.84058 * 27 6 5 53 53 H 1.08998 * 109.52133 * 297.02704 * 27 6 5 54 54 H 1.08996 * 109.48106 * 62.37190 * 28 27 6 55 55 H 1.09001 * 109.47836 * 182.41298 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5657 1.4450 0.1266 6 6 4.0731 2.8889 0.0633 7 1 3.6808 3.4508 0.9110 8 6 5.5794 2.8963 0.1072 9 8 6.1890 1.8507 0.1852 10 7 6.2493 4.0649 0.0600 11 6 7.7136 4.0721 0.1021 12 6 8.2204 5.5102 -0.0244 13 7 7.5952 6.3409 1.0077 14 6 7.7731 6.0379 2.3312 15 1 8.4375 5.2359 2.6170 16 6 7.0994 6.7616 3.3056 17 7 7.2708 6.4706 4.5776 18 14 5.9507 8.1492 2.8113 19 1 4.5803 7.6115 2.6157 20 1 5.9302 9.1795 3.8805 21 1 6.4282 8.7598 1.5446 22 6 9.7398 5.5330 0.1537 23 6 10.2467 6.9710 0.0266 24 6 9.8871 7.5181 -1.3562 25 6 8.3676 7.4954 -1.5344 26 6 7.8607 6.0579 -1.4070 27 6 3.5954 3.5314 -1.2426 28 6 2.0684 3.4485 -1.3142 29 8 1.6620 2.0817 -1.2210 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9990 0.8704 -0.6921 36 1 3.8543 0.9990 1.0784 37 1 5.7617 4.9012 -0.0027 38 1 8.1038 3.4755 -0.7225 39 1 8.0519 3.6496 1.0482 40 1 7.0552 7.1056 0.7535 41 1 6.8003 6.9766 5.2585 42 1 9.9960 5.1429 1.1387 43 1 10.2050 4.9150 -0.6142 44 1 11.3291 6.9873 0.1539 45 1 9.7815 7.5894 0.7943 46 1 10.3522 6.8998 -2.1239 47 1 10.2478 8.5428 -1.4466 48 1 8.1114 7.8856 -2.5193 49 1 7.9024 8.1138 -0.7667 50 1 8.3259 5.4398 -2.1749 51 1 6.7783 6.0416 -1.5340 52 1 3.9051 4.5761 -1.2691 53 1 4.0292 3.0003 -2.0898 54 1 1.6346 4.0138 -0.4894 55 1 1.7257 3.8658 -2.2611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115809548.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:39 Heat of formation + Delta-G solvation = -124.463181 kcal Electronic energy + Delta-G solvation = -31774.454018 eV Core-core repulsion = 27809.239204 eV Total energy + Delta-G solvation = -3965.214814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.47104 -40.45357 -39.46619 -35.97120 -35.22459 -34.89135 -34.64542 -33.02848 -31.61727 -30.88998 -30.70445 -27.70055 -26.02730 -25.41040 -24.56851 -23.56130 -22.84159 -21.86121 -21.62385 -20.83908 -19.79059 -19.69077 -18.23476 -17.43209 -17.09156 -16.84204 -16.49683 -16.31928 -16.02680 -15.75673 -15.51746 -15.21622 -14.97838 -14.86312 -14.62613 -14.51603 -14.39376 -14.27235 -13.98507 -13.85017 -13.47627 -13.35172 -12.96623 -12.83479 -12.76434 -12.72690 -12.67775 -12.38116 -12.34900 -12.12771 -12.05828 -11.93430 -11.80144 -11.69957 -11.62674 -11.35759 -11.30134 -11.20556 -10.95907 -10.77339 -10.76259 -10.36615 -9.92504 -9.25696 -7.93611 -5.27180 1.37872 1.42290 1.49973 1.66596 2.30294 2.53035 2.84599 3.37183 3.52362 3.56047 3.65053 3.75537 3.86462 3.91751 3.93808 4.04899 4.12381 4.16362 4.33894 4.36774 4.40597 4.43384 4.45092 4.52891 4.60980 4.69630 4.70747 4.72436 4.73909 4.76032 4.81882 4.87007 4.90209 4.93177 5.03415 5.05727 5.10298 5.12777 5.15241 5.17538 5.20618 5.29961 5.40857 5.40975 5.45932 5.47369 5.54188 5.62933 5.71624 5.88587 6.29335 6.29583 6.64310 7.16399 7.30349 7.89398 8.10827 9.28488 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.003414 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.894438 B = 8199.255357 C = 9063.955278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.064 0.936 5 C -0.123 4.123 6 C -0.108 4.108 7 H 0.101 0.899 8 C 0.510 3.490 9 O -0.592 6.592 10 N -0.695 5.695 11 C 0.125 3.875 12 C 0.196 3.804 13 N -0.730 5.730 14 C -0.199 4.199 15 H 0.047 0.953 16 C -0.065 4.065 17 N -0.990 5.990 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.310 1.310 21 H -0.246 1.246 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.111 4.111 27 C -0.138 4.138 28 C 0.062 3.938 29 O -0.388 6.388 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.406 0.594 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.368 0.632 41 H 0.252 0.748 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.046 0.954 50 H 0.086 0.914 51 H 0.071 0.929 52 H 0.095 0.905 53 H 0.072 0.928 54 H 0.061 0.939 55 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -2.826 -17.834 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.082 0.918 5 C -0.161 4.161 6 C -0.129 4.129 7 H 0.119 0.881 8 C 0.297 3.703 9 O -0.474 6.474 10 N -0.344 5.344 11 C -0.001 4.001 12 C 0.106 3.894 13 N -0.374 5.374 14 C -0.330 4.330 15 H 0.065 0.935 16 C -0.255 4.255 17 N -0.641 5.641 18 Si 0.775 3.225 19 H -0.202 1.202 20 H -0.238 1.238 21 H -0.170 1.170 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.149 4.149 27 C -0.176 4.176 28 C -0.015 4.015 29 O -0.307 6.307 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.242 0.758 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.203 0.797 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.089 0.911 52 H 0.113 0.887 53 H 0.090 0.910 54 H 0.079 0.921 55 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.938 -3.740 -17.766 20.236 hybrid contribution -0.127 1.181 1.353 1.800 sum -9.064 -2.559 -16.413 18.923 Atomic orbital electron populations 1.21681 0.94343 1.02144 1.02039 1.21562 0.97334 0.93487 1.03023 1.22186 0.91914 0.95070 0.87211 0.91827 1.21964 0.96530 0.94663 1.02935 1.21408 0.90321 0.99580 1.01624 0.88138 1.21039 0.90898 0.83254 0.75067 1.90632 1.71247 1.33285 1.52205 1.45704 1.07400 1.08603 1.72734 1.21646 0.80223 0.98910 0.99361 1.19986 0.92133 0.87934 0.89316 1.42740 1.60848 1.32474 1.01381 1.18718 1.19164 1.12397 0.82729 0.93461 1.25395 1.02636 1.02661 0.94857 1.69902 1.48753 1.45046 1.00432 0.85548 0.79790 0.79510 0.77695 1.20233 1.23786 1.17016 1.21792 0.95997 0.97687 1.00166 1.21330 0.99383 0.95798 0.98037 1.21477 0.96029 1.00990 0.96161 1.21494 0.95999 0.96017 1.01782 1.21725 1.01489 0.97213 0.94471 1.22181 0.98179 1.02137 0.95145 1.22718 0.92196 0.82681 1.03881 1.87902 1.78476 1.25536 1.38833 0.92593 0.91720 0.92614 0.91492 0.89971 0.91684 0.91575 0.75757 0.91510 0.95915 0.79739 0.93921 0.95202 0.90798 0.92545 0.93849 0.90739 0.91707 0.89856 0.93524 0.89520 0.91072 0.88683 0.90951 0.92099 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.81 71.98 0.71 -1.60 16 2 C -0.12 -2.16 5.64 30.60 0.17 -1.99 16 3 C 0.09 1.99 2.64 30.63 0.08 2.07 16 4 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.12 -3.18 4.02 30.69 0.12 -3.06 16 6 C -0.11 -2.83 2.61 -11.42 -0.03 -2.86 16 7 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 8 C 0.51 17.49 7.16 87.65 0.63 18.12 16 9 O -0.59 -25.00 15.97 -3.04 -0.05 -25.05 16 10 N -0.70 -22.74 5.01 -463.05 -2.32 -25.06 16 11 C 0.12 4.45 4.31 86.38 0.37 4.82 16 12 C 0.20 6.37 0.40 3.60 0.00 6.37 16 13 N -0.73 -29.07 3.26 -303.36 -0.99 -30.06 16 14 C -0.20 -10.38 9.21 84.03 0.77 -9.61 16 15 H 0.05 2.86 6.98 -2.91 -0.02 2.84 16 16 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 17 N -0.99 -62.33 13.97 21.65 0.30 -62.03 16 18 Si 0.95 42.48 27.78 68.60 1.91 44.38 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 21 H -0.25 -9.58 6.45 99.48 0.64 -8.94 16 22 C -0.12 -3.83 4.57 30.59 0.14 -3.69 16 23 C -0.11 -3.26 5.77 30.60 0.18 -3.08 16 24 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 25 C -0.12 -2.59 5.75 30.58 0.18 -2.42 16 26 C -0.11 -2.63 4.65 30.58 0.14 -2.49 16 27 C -0.14 -2.70 5.30 30.69 0.16 -2.54 16 28 C 0.06 1.05 6.84 72.01 0.49 1.54 16 29 O -0.39 -8.31 9.94 -148.98 -1.48 -9.79 16 30 H 0.05 0.95 7.82 -2.39 -0.02 0.94 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.41 11.92 6.87 -92.71 -0.64 11.28 16 38 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.02 1.01 7.55 -2.39 -0.02 1.00 16 40 H 0.37 13.94 4.35 -92.71 -0.40 13.54 16 41 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.03 1.19 7.19 -2.39 -0.02 1.17 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.61 7.60 -2.39 -0.02 1.59 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 1.24 6.86 -2.39 -0.02 1.23 16 50 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.07 1.52 7.26 -2.39 -0.02 1.51 16 52 H 0.09 1.54 7.68 -2.39 -0.02 1.52 16 53 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 54 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 55 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.99 411.63 1.89 -69.11 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.25 Total: 44.36 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.77 Total: -5.87 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -3.01 Total: -117.15 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.53 Total: -34.84 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.91 Total: 44.38 kcal Total: -70.99 1.89 -69.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115809548.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.356 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds