Wall clock time and date at job start Tue Mar 31 2020 23:05:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.53008 * 109.46599 * 2 1
4 4 H 1.08993 * 109.47385 * 55.00168 * 3 2 1
5 5 C 1.52996 * 109.47054 * 294.99751 * 3 2 1
6 6 C 1.53006 * 109.46301 * 175.00125 * 3 2 1
7 7 C 1.50702 * 109.46457 * 185.00096 * 6 3 2
8 8 O 1.21286 * 120.00341 * 359.97438 * 7 6 3
9 9 N 1.34778 * 119.99887 * 180.02562 * 7 6 3
10 10 C 1.46930 * 120.63201 * 179.97438 * 9 7 6
11 11 C 1.53185 * 108.77813 * 233.62704 * 10 9 7
12 12 C 1.53044 * 109.31362 * 305.36689 * 11 10 9
13 13 C 1.52990 * 109.46055 * 181.38344 * 12 11 10
14 14 H 1.09000 * 110.67563 * 57.03516 * 13 12 11
15 15 O 1.44377 * 110.62140 * 294.06949 * 13 12 11
16 16 C 1.43744 * 106.98032 * 201.44055 * 15 13 12
17 17 C 1.54097 * 107.29232 * 26.50972 * 16 15 13
18 18 C 1.54813 * 104.18879 * 357.97414 * 17 16 15
19 19 H 1.09002 * 110.90684 * 97.31509 * 18 17 16
20 20 N 1.46502 * 110.90918 * 220.88400 * 18 17 16
21 21 C 1.36936 * 120.00204 * 270.67213 * 20 18 17
22 22 H 1.07999 * 120.00031 * 359.97438 * 21 20 18
23 23 C 1.38812 * 120.00011 * 179.97438 * 21 20 18
24 24 N 1.31618 * 120.00061 * 0.02562 * 23 21 20
25 25 Si 1.86799 * 119.99842 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47244 * 359.97438 * 25 23 21
27 27 H 1.48497 * 109.47227 * 120.00201 * 25 23 21
28 28 H 1.48510 * 109.46947 * 239.99900 * 25 23 21
29 29 C 1.53044 * 109.53709 * 61.36293 * 12 11 10
30 30 C 1.46929 * 120.62945 * 0.02562 * 9 7 6
31 31 H 1.08998 * 109.47101 * 60.00110 * 1 2 3
32 32 H 1.08997 * 109.46515 * 179.97438 * 1 2 3
33 33 H 1.08997 * 109.47012 * 299.99947 * 1 2 3
34 34 H 1.08997 * 109.47012 * 240.00053 * 2 1 3
35 35 H 1.08998 * 109.47101 * 119.99890 * 2 1 3
36 36 H 1.09005 * 109.47069 * 300.00124 * 5 3 2
37 37 H 1.08999 * 109.47259 * 60.00450 * 5 3 2
38 38 H 1.08995 * 109.46953 * 180.02562 * 5 3 2
39 39 H 1.08994 * 109.47278 * 65.00399 * 6 3 2
40 40 H 1.09001 * 109.47331 * 304.99320 * 6 3 2
41 41 H 1.08998 * 109.58565 * 113.83720 * 10 9 7
42 42 H 1.09003 * 109.70052 * 353.48998 * 10 9 7
43 43 H 1.08992 * 109.49892 * 185.41220 * 11 10 9
44 44 H 1.09000 * 109.49615 * 65.31239 * 11 10 9
45 45 H 1.09000 * 109.45476 * 301.35766 * 12 11 10
46 46 H 1.09005 * 109.87885 * 267.09111 * 16 15 13
47 47 H 1.08990 * 109.88482 * 145.93651 * 16 15 13
48 48 H 1.09004 * 110.49131 * 239.29645 * 17 16 15
49 49 H 1.09001 * 110.60267 * 116.70737 * 17 16 15
50 50 H 0.97001 * 119.99999 * 90.66398 * 20 18 17
51 51 H 0.96996 * 119.99963 * 180.02562 * 24 23 21
52 52 H 1.08998 * 109.49816 * 58.58943 * 29 12 11
53 53 H 1.08998 * 109.49824 * 178.68504 * 29 12 11
54 54 H 1.08997 * 109.59016 * 246.15957 * 30 9 7
55 55 H 1.08995 * 109.58366 * 6.45171 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6054 1.9816 0.8418
5 6 1.6352 2.1266 -1.3073
6 6 3.5648 1.4444 0.1257
7 6 4.0569 2.8634 0.2493
8 8 3.2659 3.7828 0.2374
9 7 5.3761 3.1110 0.3719
10 6 5.8711 4.4891 0.4927
11 6 6.9393 4.7251 -0.5796
12 6 8.0255 3.6540 -0.4564
13 6 9.1117 3.9068 -1.5037
14 1 9.5292 4.9074 -1.3913
15 8 8.5867 3.7216 -2.8358
16 6 9.7089 3.4701 -3.6981
17 6 10.8230 2.8517 -2.8315
18 6 10.2273 2.8355 -1.4026
19 1 9.8073 1.8575 -1.1674
20 7 11.2351 3.2209 -0.4116
21 6 12.0328 2.2663 0.1607
22 1 11.9187 1.2292 -0.1181
23 6 12.9880 2.6316 1.0993
24 7 13.1267 3.8955 1.4395
25 14 14.0766 1.3295 1.8796
26 1 13.7232 -0.0046 1.3313
27 1 15.4995 1.6281 1.5778
28 1 13.8719 1.3297 3.3505
29 6 7.4094 2.2717 -0.6844
30 6 6.3465 2.0079 0.3861
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5138 0.8900
36 1 2.0699 1.5875 -2.1492
37 1 0.5489 2.1252 -1.3969
38 1 1.9988 3.1541 -1.3075
39 1 4.0029 0.9837 -0.7596
40 1 3.8571 0.8801 1.0113
41 1 6.3069 4.6354 1.4810
42 1 5.0480 5.1891 0.3490
43 1 7.3830 5.7108 -0.4404
44 1 6.4821 4.6676 -1.5674
45 1 8.4651 3.6956 0.5401
46 1 10.0566 4.4056 -4.1364
47 1 9.4224 2.7734 -4.4858
48 1 11.7197 3.4707 -2.8640
49 1 11.0483 1.8379 -3.1624
50 1 11.3374 4.1524 -0.1610
51 1 13.7944 4.1508 2.0951
52 1 6.9478 2.2374 -1.6712
53 1 8.1876 1.5113 -0.6197
54 1 6.8212 1.9514 1.3657
55 1 5.8356 1.0690 0.1728
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001131496359.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:05:09
Heat of formation + Delta-G solvation = -111.501016 kcal
Electronic energy + Delta-G solvation = -31032.666245 eV
Core-core repulsion = 27068.013512 eV
Total energy + Delta-G solvation = -3964.652732 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 2.46 seconds
Orbital eigenvalues (eV)
-41.48361 -40.58045 -38.43876 -37.07494 -36.24763 -34.44621 -33.42834 -32.40988
-31.32575 -30.92096 -29.41166 -28.39123 -26.25345 -25.22700 -24.60696 -24.26011
-23.11823 -21.69014 -21.26347 -20.68710 -19.72240 -19.24981 -18.11087 -17.43924
-17.01997 -16.86365 -16.53162 -16.16245 -15.99356 -15.82287 -15.47779 -15.23630
-15.01816 -14.85925 -14.56176 -14.39559 -14.28463 -14.16496 -13.79692 -13.66129
-13.38218 -13.26270 -13.06551 -12.81716 -12.77804 -12.72482 -12.69360 -12.40431
-12.19646 -12.17024 -12.11354 -11.92650 -11.86246 -11.68055 -11.63796 -11.51530
-11.39860 -11.36939 -11.01719 -10.90974 -10.61233 -10.48902 -9.60161 -9.01119
-7.93530 -5.22418 1.49014 1.50038 1.59150 1.68029 2.06117 2.55583
2.96152 3.39695 3.53520 3.63346 3.75627 3.83023 3.88603 4.00656
4.01591 4.12092 4.17062 4.19076 4.27242 4.28603 4.33751 4.43802
4.46964 4.48581 4.60844 4.62917 4.64249 4.70870 4.75277 4.80830
4.82300 4.86119 4.88756 4.90321 4.94195 5.01507 5.03489 5.10141
5.16833 5.20422 5.21320 5.25628 5.27013 5.34423 5.40932 5.51744
5.53045 5.54114 5.59213 5.63992 6.00615 6.27855 6.47922 7.23088
7.34433 8.06850 8.30692 9.29711
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.013888 B = 0.002578 C = 0.002417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2015.703091 B =10859.767753 C =11580.241386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.115 4.115
3 C -0.074 4.074
4 H 0.058 0.942
5 C -0.151 4.151
6 C -0.133 4.133
7 C 0.509 3.491
8 O -0.581 6.581
9 N -0.610 5.610
10 C 0.113 3.887
11 C -0.115 4.115
12 C -0.068 4.068
13 C 0.083 3.917
14 H 0.051 0.949
15 O -0.378 6.378
16 C 0.053 3.947
17 C -0.178 4.178
18 C 0.149 3.851
19 H 0.073 0.927
20 N -0.724 5.724
21 C -0.232 4.232
22 H 0.078 0.922
23 C -0.073 4.073
24 N -0.968 5.968
25 Si 0.967 3.033
26 H -0.264 1.264
27 H -0.299 1.299
28 H -0.295 1.295
29 C -0.119 4.119
30 C 0.108 3.892
31 H 0.054 0.946
32 H 0.062 0.938
33 H 0.048 0.952
34 H 0.071 0.929
35 H 0.071 0.929
36 H 0.056 0.944
37 H 0.058 0.942
38 H 0.045 0.955
39 H 0.111 0.889
40 H 0.114 0.886
41 H 0.070 0.930
42 H 0.079 0.921
43 H 0.073 0.927
44 H 0.062 0.938
45 H 0.073 0.927
46 H 0.055 0.945
47 H 0.100 0.900
48 H 0.055 0.945
49 H 0.074 0.926
50 H 0.373 0.627
51 H 0.250 0.750
52 H 0.071 0.929
53 H 0.078 0.922
54 H 0.074 0.926
55 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.372 -7.727 -5.791 22.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.153 4.153
3 C -0.093 4.093
4 H 0.076 0.924
5 C -0.208 4.208
6 C -0.172 4.172
7 C 0.299 3.701
8 O -0.462 6.462
9 N -0.343 5.343
10 C -0.009 4.009
11 C -0.153 4.153
12 C -0.087 4.087
13 C 0.025 3.975
14 H 0.069 0.931
15 O -0.297 6.297
16 C -0.024 4.024
17 C -0.219 4.219
18 C 0.039 3.961
19 H 0.091 0.909
20 N -0.363 5.363
21 C -0.364 4.364
22 H 0.096 0.904
23 C -0.265 4.265
24 N -0.619 5.619
25 Si 0.797 3.203
26 H -0.188 1.188
27 H -0.226 1.226
28 H -0.223 1.223
29 C -0.157 4.157
30 C -0.014 4.014
31 H 0.073 0.927
32 H 0.081 0.919
33 H 0.067 0.933
34 H 0.090 0.910
35 H 0.090 0.910
36 H 0.075 0.925
37 H 0.077 0.923
38 H 0.064 0.936
39 H 0.129 0.871
40 H 0.132 0.868
41 H 0.088 0.912
42 H 0.097 0.903
43 H 0.092 0.908
44 H 0.081 0.919
45 H 0.091 0.909
46 H 0.074 0.926
47 H 0.118 0.882
48 H 0.074 0.926
49 H 0.093 0.907
50 H 0.205 0.795
51 H 0.058 0.942
52 H 0.090 0.910
53 H 0.097 0.903
54 H 0.092 0.908
55 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -20.943 -7.426 -5.820 22.970
hybrid contribution 1.607 0.430 0.617 1.774
sum -19.336 -6.996 -5.203 21.211
Atomic orbital electron populations
1.21820 0.95735 1.01947 1.01703 1.21565 0.96172 0.94667 1.02870
1.20890 0.92931 0.96922 0.98509 0.92397 1.21938 1.01342 1.00656
0.96857 1.21871 0.97437 0.92074 1.05859 1.21337 0.81292 0.92792
0.74661 1.90628 1.55100 1.48202 1.52285 1.48283 1.06311 1.07795
1.71904 1.21509 0.97023 0.83559 0.98844 1.21799 0.95557 0.98855
0.99082 1.21021 0.94035 0.96306 0.97314 1.23179 0.93585 0.97450
0.83314 0.93069 1.88796 1.30281 1.92469 1.18161 1.23127 0.86069
0.99861 0.93325 1.23560 0.98731 1.01548 0.98014 1.22005 0.88562
0.97308 0.88199 0.90903 1.42406 1.40000 1.06924 1.47011 1.19586
1.10643 0.90176 1.15970 0.90385 1.25488 1.01796 0.97863 1.01356
1.69812 1.38256 1.16619 1.37187 0.85159 0.78209 0.79193 0.77718
1.18799 1.22625 1.22276 1.21850 0.98115 0.96228 0.99541 1.21928
0.90008 0.89849 0.99637 0.92726 0.91880 0.93252 0.91001 0.91005
0.92513 0.92341 0.93642 0.87079 0.86820 0.91203 0.90260 0.90842
0.91943 0.90888 0.92634 0.88201 0.92647 0.90720 0.79532 0.94157
0.91012 0.90336 0.90806 0.86772
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16
2 C -0.12 -1.38 5.40 30.60 0.17 -1.21 16
3 C -0.07 -1.23 2.04 -10.79 -0.02 -1.25 16
4 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16
5 C -0.15 -2.86 8.69 71.98 0.63 -2.23 16
6 C -0.13 -2.09 3.52 29.85 0.11 -1.99 16
7 C 0.51 12.15 7.42 87.66 0.65 12.80 16
8 O -0.58 -18.15 13.38 -3.05 -0.04 -18.19 16
9 N -0.61 -13.99 2.97 -819.00 -2.43 -16.43 16
10 C 0.11 2.83 6.43 86.36 0.56 3.39 16
11 C -0.11 -2.98 5.26 30.67 0.16 -2.82 16
12 C -0.07 -1.91 2.11 -10.77 -0.02 -1.93 16
13 C 0.08 2.66 2.67 31.27 0.08 2.75 16
14 H 0.05 1.80 8.02 -2.39 -0.02 1.79 16
15 O -0.38 -11.38 10.09 -148.98 -1.50 -12.89 16
16 C 0.05 1.44 7.70 72.35 0.56 2.00 16
17 C -0.18 -5.81 6.76 31.58 0.21 -5.59 16
18 C 0.15 5.40 3.11 46.29 0.14 5.54 16
19 H 0.07 2.59 5.85 -2.39 -0.01 2.58 16
20 N -0.72 -33.78 5.20 -316.79 -1.65 -35.42 16
21 C -0.23 -11.98 9.97 84.03 0.84 -11.14 16
22 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16
23 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16
24 N -0.97 -56.99 13.06 21.65 0.28 -56.71 16
25 Si 0.97 44.16 29.55 68.60 2.03 46.19 16
26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16
27 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16
28 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16
29 C -0.12 -2.80 4.92 30.66 0.15 -2.65 16
30 C 0.11 2.06 6.34 86.34 0.55 2.61 16
31 H 0.05 0.68 6.56 -2.39 -0.02 0.66 16
32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
36 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16
37 H 0.06 1.01 6.56 -2.39 -0.02 0.99 16
38 H 0.04 1.14 5.95 -2.39 -0.01 1.13 16
39 H 0.11 1.39 7.69 -2.39 -0.02 1.37 16
40 H 0.11 1.32 7.94 -2.39 -0.02 1.30 16
41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16
42 H 0.08 2.16 7.01 -2.39 -0.02 2.14 16
43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16
44 H 0.06 1.74 7.94 -2.39 -0.02 1.72 16
45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
46 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16
47 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16
48 H 0.05 2.04 8.06 -2.38 -0.02 2.02 16
49 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16
50 H 0.37 19.07 7.74 -92.71 -0.72 18.36 16
51 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16
52 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16
53 H 0.08 1.92 6.10 -2.39 -0.01 1.91 16
54 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
55 H 0.11 1.49 5.93 -2.39 -0.01 1.47 16
Total: -1.00 -64.65 413.88 2.74 -61.91
By element:
Atomic # 1 Polarization: 37.78 SS G_CDS: 0.14 Total: 37.92 kcal
Atomic # 6 Polarization: -12.30 SS G_CDS: 5.91 Total: -6.39 kcal
Atomic # 7 Polarization: -104.76 SS G_CDS: -3.80 Total: -108.56 kcal
Atomic # 8 Polarization: -29.54 SS G_CDS: -1.54 Total: -31.08 kcal
Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal
Total: -64.65 2.74 -61.91 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001131496359.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.588 kcal
(2) G-P(sol) polarization free energy of solvation -64.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.501 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.46 seconds