Wall clock time and date at job start Tue Mar 31 2020 23:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47089 * 2 1 4 4 H 1.09002 * 109.47030 * 304.99456 * 3 2 1 5 5 C 1.53001 * 109.47332 * 64.99757 * 3 2 1 6 6 C 1.53000 * 109.46742 * 184.99799 * 3 2 1 7 7 C 1.50703 * 109.46665 * 174.99709 * 6 3 2 8 8 O 1.21276 * 120.00313 * 359.97438 * 7 6 3 9 9 N 1.34787 * 119.99759 * 179.97438 * 7 6 3 10 10 C 1.46924 * 120.63033 * 359.72119 * 9 7 6 11 11 C 1.53187 * 108.77642 * 126.66473 * 10 9 7 12 12 C 1.53041 * 109.31211 * 54.63373 * 11 10 9 13 13 C 1.52994 * 109.46090 * 178.61149 * 12 11 10 14 14 H 1.08998 * 109.87118 * 179.06311 * 13 12 11 15 15 O 1.43743 * 109.87919 * 57.90272 * 13 12 11 16 16 C 1.44378 * 106.97979 * 214.06374 * 15 13 12 17 17 C 1.54997 * 103.49105 * 40.05362 * 16 15 13 18 18 C 1.54098 * 109.88360 * 300.07143 * 13 12 11 19 19 H 1.09006 * 110.48234 * 2.77462 * 18 13 12 20 20 N 1.46498 * 110.49023 * 240.26578 * 18 13 12 21 21 C 1.36936 * 120.00647 * 154.99892 * 20 18 13 22 22 H 1.08006 * 119.99189 * 359.97438 * 21 20 18 23 23 C 1.38806 * 120.00406 * 179.97438 * 21 20 18 24 24 N 1.31618 * 119.99969 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00165 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46680 * 60.00201 * 25 23 21 27 27 H 1.48499 * 109.47217 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47212 * 300.00693 * 25 23 21 29 29 C 1.53038 * 109.53768 * 298.63806 * 12 11 10 30 30 C 1.46926 * 120.62918 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46920 * 300.00450 * 1 2 3 33 33 H 1.08996 * 109.46905 * 60.00335 * 1 2 3 34 34 H 1.08991 * 109.47120 * 239.99303 * 2 1 3 35 35 H 1.09004 * 109.46803 * 119.99358 * 2 1 3 36 36 H 1.08994 * 109.46975 * 59.99837 * 5 3 2 37 37 H 1.08999 * 109.46541 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.46806 * 299.99930 * 5 3 2 39 39 H 1.08998 * 109.47231 * 54.99904 * 6 3 2 40 40 H 1.09001 * 109.47359 * 294.99777 * 6 3 2 41 41 H 1.09003 * 109.58516 * 246.45674 * 10 9 7 42 42 H 1.09002 * 109.58479 * 6.87832 * 10 9 7 43 43 H 1.08999 * 109.49975 * 294.68379 * 11 10 9 44 44 H 1.08998 * 109.50042 * 174.58459 * 11 10 9 45 45 H 1.09007 * 109.44471 * 58.64946 * 12 11 10 46 46 H 1.09009 * 110.61321 * 281.55746 * 16 15 13 47 47 H 1.08995 * 110.62443 * 158.55762 * 16 15 13 48 48 H 1.08994 * 110.90857 * 204.77786 * 17 16 15 49 49 H 1.09000 * 110.93320 * 81.19251 * 17 16 15 50 50 H 0.97004 * 119.99745 * 334.99154 * 20 18 13 51 51 H 0.96998 * 119.99911 * 179.97438 * 24 23 21 52 52 H 1.08999 * 109.49677 * 301.40907 * 29 12 11 53 53 H 1.09006 * 109.49905 * 181.31860 * 29 12 11 54 54 H 1.09002 * 109.58798 * 353.11768 * 30 9 7 55 55 H 1.08996 * 109.58781 * 113.40238 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0570 2.8633 -0.2493 8 8 3.2661 3.7826 -0.2384 9 7 5.3763 3.1107 -0.3719 10 6 6.3471 2.0080 -0.3805 11 6 7.2255 2.1341 -1.6292 12 6 7.8569 3.5277 -1.6653 13 6 8.7623 3.6455 -2.8929 14 1 9.2027 4.6417 -2.9342 15 8 8.0021 3.3941 -4.0867 16 6 8.8857 2.7332 -5.0178 17 6 9.6893 1.7561 -4.1223 18 6 9.8760 2.5826 -2.8267 19 1 9.7475 1.9496 -1.9486 20 7 11.1942 3.2214 -2.8083 21 6 12.2635 2.5693 -2.2547 22 1 12.1349 1.5841 -1.8313 23 6 13.5126 3.1745 -2.2377 24 7 13.6694 4.3749 -2.7541 25 14 14.9712 2.2852 -1.4819 26 1 15.2009 1.0083 -2.2045 27 1 16.1812 3.1394 -1.5884 28 1 14.6907 2.0009 -0.0517 29 6 6.7550 4.5870 -1.7407 30 6 5.8714 4.4888 -0.4927 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8898 35 1 1.8934 -0.5138 0.8901 36 1 2.0698 1.5876 2.1491 37 1 1.9983 3.1544 1.3070 38 1 0.5489 2.1253 1.3968 39 1 3.8571 0.8799 -1.0112 40 1 4.0030 0.9835 0.7597 41 1 6.9706 2.0630 0.5119 42 1 5.8178 1.0553 -0.4008 43 1 6.6145 1.9884 -2.5200 44 1 8.0113 1.3794 -1.5991 45 1 8.4477 3.6819 -0.7622 46 1 9.5513 3.4540 -5.4929 47 1 8.3140 2.1854 -5.7669 48 1 10.6523 1.5174 -4.5737 49 1 9.1182 0.8487 -3.9260 50 1 11.3096 4.1064 -3.1883 51 1 14.5422 4.7980 -2.7419 52 1 6.1484 4.4183 -2.6305 53 1 7.2059 5.5782 -1.7900 54 1 5.0282 5.1730 -0.5871 55 1 6.4540 4.7466 0.3916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131496360.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:15 Heat of formation + Delta-G solvation = -111.605838 kcal Electronic energy + Delta-G solvation = -30906.614428 eV Core-core repulsion = 26941.957150 eV Total energy + Delta-G solvation = -3964.657278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.51140 -40.62576 -38.41226 -37.06758 -36.18559 -34.42865 -33.43385 -32.38233 -31.34240 -30.83300 -29.45216 -28.39610 -26.23026 -25.24881 -24.54689 -24.21333 -23.26958 -21.64212 -21.26502 -20.75912 -19.69535 -19.16477 -18.11814 -17.39954 -16.90459 -16.77270 -16.59884 -16.28045 -16.21048 -15.84537 -15.27506 -15.14882 -15.06439 -14.86471 -14.65045 -14.48203 -14.27807 -13.98018 -13.85157 -13.53993 -13.32864 -13.22984 -12.97988 -12.79393 -12.77145 -12.69223 -12.58508 -12.33166 -12.22523 -12.22368 -12.10143 -11.98065 -11.94327 -11.70629 -11.58435 -11.51169 -11.41649 -11.36510 -11.14221 -10.88916 -10.62658 -10.48519 -9.59076 -9.02377 -7.94063 -5.23572 1.48935 1.50975 1.57023 1.69179 2.07216 2.55928 3.00731 3.37811 3.55314 3.61296 3.77015 3.85904 3.90667 4.01580 4.02484 4.12968 4.16981 4.19156 4.27176 4.27873 4.37724 4.43511 4.47656 4.50621 4.62227 4.63669 4.67379 4.71352 4.74872 4.82191 4.82940 4.86425 4.88971 4.91615 4.94693 5.03156 5.06940 5.12157 5.17251 5.19941 5.21193 5.26533 5.27854 5.34639 5.39798 5.50916 5.53158 5.53449 5.59635 5.64668 6.01137 6.27904 6.49003 7.24414 7.32861 8.06605 8.29319 9.28920 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002292 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.041526 B =12213.592599 C =12382.136106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.054 0.946 5 C -0.150 4.150 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.583 6.583 9 N -0.611 5.611 10 C 0.107 3.893 11 C -0.121 4.121 12 C -0.073 4.073 13 C 0.081 3.919 14 H 0.043 0.957 15 O -0.379 6.379 16 C 0.052 3.948 17 C -0.171 4.171 18 C 0.148 3.852 19 H 0.074 0.926 20 N -0.730 5.730 21 C -0.236 4.236 22 H 0.081 0.919 23 C -0.076 4.076 24 N -0.970 5.970 25 Si 0.971 3.029 26 H -0.278 1.278 27 H -0.301 1.301 28 H -0.276 1.276 29 C -0.115 4.115 30 C 0.115 3.885 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.039 0.961 47 H 0.110 0.890 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.370 0.630 51 H 0.250 0.750 52 H 0.058 0.942 53 H 0.069 0.931 54 H 0.075 0.925 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.479 -10.464 5.459 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.094 4.094 4 H 0.073 0.927 5 C -0.207 4.207 6 C -0.171 4.171 7 C 0.298 3.702 8 O -0.464 6.464 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.159 4.159 12 C -0.092 4.092 13 C 0.022 3.978 14 H 0.061 0.939 15 O -0.298 6.298 16 C -0.025 4.025 17 C -0.211 4.211 18 C 0.039 3.961 19 H 0.092 0.908 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.098 0.902 23 C -0.268 4.268 24 N -0.620 5.620 25 Si 0.800 3.200 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.202 1.202 29 C -0.153 4.153 30 C -0.008 4.008 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.128 0.872 48 H 0.079 0.921 49 H 0.107 0.893 50 H 0.202 0.798 51 H 0.058 0.942 52 H 0.077 0.923 53 H 0.088 0.912 54 H 0.094 0.906 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.003 -10.060 5.536 25.710 hybrid contribution 1.686 0.681 -0.184 1.828 sum -21.317 -9.380 5.351 23.896 Atomic orbital electron populations 1.21823 0.95843 1.01930 1.01655 1.21561 0.96090 0.94683 1.02901 1.20894 0.93090 0.96897 0.98499 0.92725 1.21934 1.01314 1.00665 0.96823 1.21862 0.97322 0.92039 1.05921 1.21353 0.81311 0.92768 0.74727 1.90631 1.55143 1.48266 1.52313 1.48290 1.06370 1.07858 1.71838 1.21982 0.91052 0.90056 0.98378 1.21887 0.99443 0.96015 0.98579 1.21193 0.95463 0.96681 0.95895 1.22964 0.91271 0.97385 0.86154 0.93901 1.88783 1.35765 1.79752 1.25507 1.23495 0.92327 0.93927 0.92712 1.23707 1.00217 0.99177 0.98039 1.21817 0.84412 0.93025 0.96888 0.90780 1.42645 1.04522 1.19106 1.70683 1.19563 0.88190 0.99631 1.29407 0.90153 1.25555 1.00554 0.97665 1.03044 1.69815 1.23367 1.16237 1.52623 0.85246 0.78752 0.77387 0.78582 1.20391 1.22738 1.20200 1.21779 0.96641 0.99051 0.97832 1.21509 0.97865 0.83602 0.97833 0.91883 0.92677 0.93418 0.91116 0.90791 0.92243 0.93601 0.92497 0.87009 0.86675 0.90143 0.86767 0.91282 0.89729 0.90285 0.94270 0.87248 0.92107 0.89268 0.79830 0.94160 0.92275 0.91230 0.90603 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.67 71.98 0.70 -1.06 16 2 C -0.11 -1.26 5.40 30.60 0.17 -1.10 16 3 C -0.07 -1.17 2.04 -10.79 -0.02 -1.20 16 4 H 0.05 1.11 7.95 -2.39 -0.02 1.09 16 5 C -0.15 -2.62 8.69 71.98 0.63 -1.99 16 6 C -0.13 -1.87 3.52 29.85 0.11 -1.76 16 7 C 0.51 11.36 7.42 87.66 0.65 12.01 16 8 O -0.58 -17.62 13.38 -3.02 -0.04 -17.66 16 9 N -0.61 -12.71 2.97 -818.83 -2.43 -15.14 16 10 C 0.11 1.69 6.34 86.36 0.55 2.24 16 11 C -0.12 -2.48 4.94 30.67 0.15 -2.32 16 12 C -0.07 -1.91 1.93 -10.77 -0.02 -1.93 16 13 C 0.08 2.62 2.93 30.96 0.09 2.71 16 14 H 0.04 1.63 7.64 -2.39 -0.02 1.61 16 15 O -0.38 -11.95 9.95 -148.98 -1.48 -13.43 16 16 C 0.05 1.54 7.72 72.67 0.56 2.10 16 17 C -0.17 -5.42 6.88 31.89 0.22 -5.20 16 18 C 0.15 5.31 2.82 45.98 0.13 5.44 16 19 H 0.07 2.54 6.19 -2.38 -0.01 2.53 16 20 N -0.73 -34.72 5.13 -318.26 -1.63 -36.35 16 21 C -0.24 -12.35 9.96 84.03 0.84 -11.51 16 22 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 23 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 24 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 25 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 29 C -0.11 -2.89 5.22 30.68 0.16 -2.73 16 30 C 0.11 2.67 6.43 86.37 0.56 3.22 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.64 6.56 -2.39 -0.02 0.62 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.04 1.07 5.95 -2.39 -0.01 1.06 16 38 H 0.06 0.92 6.56 -2.39 -0.02 0.90 16 39 H 0.11 1.20 7.70 -2.39 -0.02 1.18 16 40 H 0.12 1.13 7.94 -2.39 -0.02 1.11 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.14 5.94 -2.39 -0.01 1.12 16 43 H 0.07 1.53 7.69 -2.39 -0.02 1.51 16 44 H 0.08 1.68 6.37 -2.39 -0.02 1.66 16 45 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 48 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 49 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.37 19.50 7.54 -92.71 -0.70 18.80 16 51 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 52 H 0.06 1.66 7.80 -2.39 -0.02 1.64 16 53 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 54 H 0.08 1.99 7.01 -2.39 -0.02 1.97 16 55 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.86 413.53 2.80 -64.07 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.16 Total: 36.53 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 5.92 Total: -6.81 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -3.78 Total: -109.22 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.52 Total: -31.08 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -66.86 2.80 -64.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131496360.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.541 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds