Wall clock time and date at job start Tue Mar 31 2020 23:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00264 * 2 1 4 4 H 1.08999 * 109.46918 * 0.02562 * 3 2 1 5 5 C 1.53000 * 109.46848 * 119.99996 * 3 2 1 6 6 C 1.53008 * 109.46751 * 185.93161 * 5 3 2 7 7 C 1.52995 * 109.46999 * 240.00389 * 3 2 1 8 8 C 1.50697 * 109.47644 * 66.38604 * 7 3 2 9 9 O 1.21284 * 119.99996 * 356.93694 * 8 7 3 10 10 N 1.34776 * 120.00289 * 177.21327 * 8 7 3 11 11 C 1.46498 * 120.00244 * 184.72833 * 10 8 7 12 12 C 1.53000 * 109.46458 * 297.01125 * 11 10 8 13 13 C 1.53000 * 109.46585 * 301.87551 * 12 11 10 14 14 O 1.42902 * 109.47312 * 183.60557 * 13 12 11 15 15 C 1.42897 * 114.00330 * 184.90268 * 14 13 12 16 16 C 1.53044 * 109.46116 * 177.04225 * 11 10 8 17 17 C 1.53190 * 109.31295 * 301.35141 * 16 11 10 18 18 N 1.46929 * 108.77420 * 305.36278 * 17 16 11 19 19 C 1.36937 * 120.63084 * 233.63062 * 18 17 16 20 20 H 1.08008 * 119.99445 * 32.01685 * 19 18 17 21 21 C 1.38814 * 120.00371 * 212.02285 * 19 18 17 22 22 N 1.31619 * 119.99592 * 9.89461 * 21 19 18 23 23 Si 1.86801 * 119.99983 * 189.89767 * 21 19 18 24 24 H 1.48500 * 109.46945 * 59.99875 * 23 21 19 25 25 H 1.48505 * 109.46780 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47128 * 299.99714 * 23 21 19 27 27 C 1.46921 * 118.73934 * 53.61118 * 18 17 16 28 28 C 1.53047 * 109.45374 * 56.97941 * 11 10 8 29 29 H 1.08003 * 120.00294 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99577 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99577 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47355 * 305.93222 * 5 3 2 33 33 H 1.08996 * 109.46781 * 65.93764 * 5 3 2 34 34 H 1.08995 * 109.46912 * 303.25234 * 6 5 3 35 35 H 1.08997 * 109.47164 * 63.25313 * 6 5 3 36 36 H 1.08993 * 109.46583 * 183.25361 * 6 5 3 37 37 H 1.08999 * 109.47306 * 306.38013 * 7 3 2 38 38 H 1.09006 * 109.46951 * 186.38757 * 7 3 2 39 39 H 0.96998 * 120.00114 * 4.73813 * 10 8 7 40 40 H 1.09000 * 109.47256 * 61.87451 * 12 11 10 41 41 H 1.08995 * 109.47109 * 181.88086 * 12 11 10 42 42 H 1.08996 * 109.47563 * 303.61010 * 13 12 11 43 43 H 1.09007 * 109.47059 * 63.61085 * 13 12 11 44 44 H 1.08993 * 109.47055 * 175.09669 * 15 14 13 45 45 H 1.09005 * 109.46876 * 295.09483 * 15 14 13 46 46 H 1.08996 * 109.47062 * 55.09564 * 15 14 13 47 47 H 1.09003 * 109.49220 * 61.30347 * 16 11 10 48 48 H 1.08999 * 109.49401 * 181.40144 * 16 11 10 49 49 H 1.08998 * 109.58479 * 185.57772 * 17 16 11 50 50 H 1.08997 * 109.58822 * 65.15147 * 17 16 11 51 51 H 0.97001 * 119.99962 * 180.02562 * 22 21 19 52 52 H 1.08999 * 109.58533 * 186.60169 * 27 18 17 53 53 H 1.09005 * 109.70256 * 66.24664 * 27 18 17 54 54 H 1.09002 * 109.49652 * 178.60329 * 28 11 10 55 55 H 1.08999 * 109.49703 * 298.70216 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1335 0.0005 5 6 2.9432 1.3860 1.2493 6 6 3.5939 2.7687 1.3260 7 6 2.9431 1.3861 -1.2493 8 6 2.0694 1.4643 -2.4746 9 8 0.8633 1.4002 -2.3645 10 7 2.6285 1.6000 -3.6934 11 6 1.7789 1.7802 -4.8732 12 6 0.9053 0.5391 -5.0666 13 6 1.7979 -0.6944 -5.2169 14 8 0.9863 -1.8405 -5.4812 15 6 1.7139 -3.0694 -5.5297 16 6 2.6586 1.9819 -6.1091 17 6 3.5564 3.2051 -5.8978 18 7 2.7114 4.3597 -5.5636 19 6 2.8058 5.5237 -6.2788 20 1 3.0576 5.4934 -7.3287 21 6 2.5782 6.7424 -5.6545 22 7 2.4646 6.7996 -4.3444 23 14 2.4328 8.3012 -6.6736 24 1 1.2994 8.1675 -7.6237 25 1 2.1914 9.4590 -5.7755 26 1 3.6915 8.5161 -7.4316 27 6 1.7629 4.2416 -4.4478 28 6 0.8853 3.0068 -4.6753 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 2.3308 1.2229 2.1361 33 1 3.7187 0.6218 1.1976 34 1 4.1597 2.9551 0.4132 35 1 2.8204 3.5287 1.4357 36 1 4.2652 2.8070 2.1838 37 1 3.5731 0.4985 -1.3083 38 1 3.5718 2.2748 -1.1939 39 1 3.5935 1.5783 -3.7895 40 1 0.2552 0.4138 -4.2007 41 1 0.2973 0.6589 -5.9632 42 1 2.4919 -0.5422 -6.0435 43 1 2.3591 -0.8513 -4.2956 44 1 1.0175 -3.8995 -5.6476 45 1 2.4031 -3.0505 -6.3740 46 1 2.2762 -3.1954 -4.6044 47 1 3.2780 1.0982 -6.2629 48 1 2.0271 2.1408 -6.9832 49 1 4.1130 3.4120 -6.8118 50 1 4.2509 3.0118 -5.0804 51 1 2.3052 7.6511 -3.9081 52 1 1.1363 5.1324 -4.4051 53 1 2.3093 4.1339 -3.5108 54 1 0.2705 3.1560 -5.5629 55 1 0.2425 2.8526 -3.8086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151259498.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:20 Heat of formation + Delta-G solvation = -73.503224 kcal Electronic energy + Delta-G solvation = -32232.696735 eV Core-core repulsion = 28269.691711 eV Total energy + Delta-G solvation = -3963.005025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.60213 -39.39360 -38.59685 -37.40828 -36.07875 -33.66310 -33.14880 -32.88894 -31.77952 -30.52928 -30.05098 -27.63997 -26.45993 -26.02143 -24.62350 -23.69314 -22.45242 -21.90321 -21.49857 -20.39507 -20.05385 -18.78664 -18.09854 -17.44872 -16.95408 -16.81422 -16.43101 -16.23954 -15.90046 -15.70680 -15.42572 -15.25029 -15.14998 -14.90181 -14.67277 -14.45829 -14.25219 -13.97561 -13.87681 -13.70768 -13.19461 -13.13851 -13.00169 -12.78120 -12.74076 -12.64125 -12.58211 -12.44223 -12.27016 -12.15527 -12.06245 -11.92947 -11.88533 -11.75909 -11.53307 -11.30839 -11.28088 -11.22437 -10.57863 -10.52142 -10.37435 -9.95641 -9.74571 -8.56852 -7.84028 -5.35391 1.46147 1.48593 1.54503 1.58831 1.92280 2.41667 2.51774 2.84555 3.32085 3.72472 3.74433 3.86014 3.95619 3.97257 4.06064 4.15983 4.21633 4.37026 4.40472 4.45009 4.47826 4.53348 4.55170 4.56929 4.59583 4.61888 4.67170 4.72023 4.76753 4.81725 4.84511 4.95533 5.01563 5.02497 5.08718 5.10123 5.14836 5.18329 5.20997 5.22238 5.33987 5.37543 5.39072 5.53420 5.54127 5.65716 5.75269 5.83466 5.87004 6.12077 6.28490 6.43511 6.83150 7.18745 7.54723 7.89579 8.41955 9.20537 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008768 B = 0.004297 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3192.621624 B = 6514.707607 C = 8895.450341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C -0.042 4.042 4 H 0.049 0.951 5 C -0.106 4.106 6 C -0.158 4.158 7 C -0.131 4.131 8 C 0.508 3.492 9 O -0.558 6.558 10 N -0.712 5.712 11 C 0.206 3.794 12 C -0.118 4.118 13 C 0.076 3.924 14 O -0.420 6.420 15 C 0.026 3.974 16 C -0.128 4.128 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.066 0.934 21 C -0.047 4.047 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.272 1.272 27 C 0.199 3.801 28 C -0.138 4.138 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.406 0.594 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.027 0.973 51 H 0.247 0.753 52 H 0.038 0.962 53 H -0.002 1.002 54 H 0.047 0.953 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -19.035 5.813 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C -0.061 4.061 4 H 0.067 0.933 5 C -0.143 4.143 6 C -0.215 4.215 7 C -0.170 4.170 8 C 0.296 3.704 9 O -0.437 6.437 10 N -0.364 5.364 11 C 0.120 3.880 12 C -0.157 4.157 13 C 0.000 4.000 14 O -0.340 6.340 15 C -0.069 4.069 16 C -0.167 4.167 17 C 0.018 3.982 18 N -0.330 5.330 19 C -0.393 4.393 20 H 0.083 0.917 21 C -0.242 4.242 22 N -0.580 5.580 23 Si 0.792 3.208 24 H -0.207 1.207 25 H -0.223 1.223 26 H -0.198 1.198 27 C 0.073 3.927 28 C -0.178 4.178 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.242 0.758 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.045 0.955 51 H 0.056 0.944 52 H 0.056 0.944 53 H 0.016 0.984 54 H 0.066 0.934 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.650 -18.901 5.947 20.148 hybrid contribution 0.114 1.473 -0.427 1.538 sum 3.764 -17.428 5.519 18.665 Atomic orbital electron populations 1.23679 0.96566 1.00771 1.00687 1.22803 0.95691 0.97754 1.00025 1.20078 0.96325 0.95725 0.93958 0.93254 1.21475 0.98759 0.97918 0.96172 1.21872 1.00588 0.96810 1.02273 1.21793 0.98474 1.05602 0.91172 1.21081 0.89213 0.74965 0.85181 1.90634 1.16262 1.50097 1.86694 1.46035 1.10346 1.73895 1.06164 1.19872 0.90305 0.92395 0.85469 1.21786 0.98616 0.92797 1.02460 1.22470 0.93009 0.84713 0.99844 1.87841 1.36851 1.16368 1.92966 1.22905 0.97570 0.85654 1.00817 1.22288 0.98951 0.99302 0.96140 1.21054 0.92008 0.86782 0.98356 1.44198 1.41450 1.10734 1.36633 1.19464 1.43160 0.84702 0.91995 0.91657 1.25874 1.01578 1.00628 0.96154 1.70137 1.54436 1.24747 1.08637 0.85402 0.78327 0.79278 0.77773 1.20716 1.22313 1.19780 1.20265 0.90165 0.93956 0.88327 1.22349 0.98511 0.96256 1.00662 0.88364 0.90705 0.86265 0.91585 0.89915 0.92564 0.94158 0.91357 0.86302 0.88390 0.75775 0.91596 0.91662 0.91798 0.93114 0.88772 0.92947 0.93381 0.88562 0.91402 0.92402 0.95468 0.94391 0.94371 0.98366 0.93431 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.65 13.22 67.78 0.90 -3.76 16 2 C -0.14 -3.32 7.80 25.64 0.20 -3.12 16 3 C -0.04 -0.97 1.79 -11.54 -0.02 -0.99 16 4 H 0.05 1.47 7.60 -2.39 -0.02 1.45 16 5 C -0.11 -1.88 5.38 30.60 0.16 -1.72 16 6 C -0.16 -3.03 9.76 71.98 0.70 -2.32 16 7 C -0.13 -2.90 5.06 29.85 0.15 -2.75 16 8 C 0.51 15.06 6.93 87.66 0.61 15.66 16 9 O -0.56 -20.26 10.42 -3.04 -0.03 -20.30 16 10 N -0.71 -19.90 3.29 -422.79 -1.39 -21.29 16 11 C 0.21 6.54 0.35 3.63 0.00 6.54 16 12 C -0.12 -3.57 4.44 30.59 0.14 -3.44 16 13 C 0.08 1.86 5.49 71.98 0.40 2.25 16 14 O -0.42 -11.03 10.70 -148.98 -1.59 -12.62 16 15 C 0.03 0.46 11.01 113.37 1.25 1.71 16 16 C -0.13 -3.78 4.68 30.67 0.14 -3.64 16 17 C 0.14 5.30 6.24 86.36 0.54 5.83 16 18 N -0.61 -29.43 2.98 -699.11 -2.09 -31.52 16 19 C -0.26 -14.24 9.58 84.03 0.80 -13.44 16 20 H 0.07 3.43 7.85 -2.91 -0.02 3.40 16 21 C -0.05 -2.61 5.06 84.86 0.43 -2.18 16 22 N -0.93 -55.54 11.06 21.65 0.24 -55.30 16 23 Si 0.96 45.06 29.57 68.60 2.03 47.09 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C 0.20 9.80 4.99 86.36 0.43 10.23 16 28 C -0.14 -5.69 4.62 30.67 0.14 -5.55 16 29 H 0.10 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.07 2.23 7.83 -2.91 -0.02 2.21 16 31 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.11 6.33 -2.39 -0.02 1.09 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.10 2.19 6.27 -2.38 -0.01 2.17 16 39 H 0.41 9.47 7.37 -92.71 -0.68 8.79 16 40 H 0.07 2.35 6.27 -2.39 -0.01 2.34 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.35 6.27 -2.39 -0.01 1.34 16 43 H 0.05 1.17 7.65 -2.38 -0.02 1.16 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 47 H 0.10 2.13 6.33 -2.39 -0.02 2.12 16 48 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 50 H 0.03 0.95 7.00 -2.39 -0.02 0.94 16 51 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 52 H 0.04 2.21 6.13 -2.39 -0.01 2.20 16 53 H 0.00 -0.09 7.65 -2.38 -0.02 -0.11 16 54 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 55 H 0.06 2.59 6.17 -2.39 -0.01 2.57 16 Total: -1.00 -69.12 414.34 4.30 -64.81 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.17 Total: 29.82 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 6.97 Total: -0.69 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.24 Total: -108.12 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.63 Total: -32.92 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -69.12 4.30 -64.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151259498.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.690 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds