Wall clock time and date at job start Tue Mar 31 2020 23:29:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31003 * 1
3 3 C 1.50698 * 120.00264 * 2 1
4 4 H 1.08999 * 109.46918 * 0.02562 * 3 2 1
5 5 C 1.53000 * 109.46848 * 119.99996 * 3 2 1
6 6 C 1.53008 * 109.46751 * 185.93161 * 5 3 2
7 7 C 1.52995 * 109.46999 * 240.00389 * 3 2 1
8 8 C 1.50697 * 109.47644 * 66.38604 * 7 3 2
9 9 O 1.21284 * 119.99996 * 356.93694 * 8 7 3
10 10 N 1.34776 * 120.00289 * 177.21327 * 8 7 3
11 11 C 1.46498 * 120.00244 * 184.72833 * 10 8 7
12 12 C 1.53000 * 109.46458 * 297.01125 * 11 10 8
13 13 C 1.53000 * 109.46585 * 301.87551 * 12 11 10
14 14 O 1.42902 * 109.47312 * 183.60557 * 13 12 11
15 15 C 1.42897 * 114.00330 * 184.90268 * 14 13 12
16 16 C 1.53044 * 109.46116 * 177.04225 * 11 10 8
17 17 C 1.53190 * 109.31295 * 301.35141 * 16 11 10
18 18 N 1.46929 * 108.77420 * 305.36278 * 17 16 11
19 19 C 1.36937 * 120.63084 * 233.63062 * 18 17 16
20 20 H 1.08008 * 119.99445 * 32.01685 * 19 18 17
21 21 C 1.38814 * 120.00371 * 212.02285 * 19 18 17
22 22 N 1.31619 * 119.99592 * 9.89461 * 21 19 18
23 23 Si 1.86801 * 119.99983 * 189.89767 * 21 19 18
24 24 H 1.48500 * 109.46945 * 59.99875 * 23 21 19
25 25 H 1.48505 * 109.46780 * 179.97438 * 23 21 19
26 26 H 1.48492 * 109.47128 * 299.99714 * 23 21 19
27 27 C 1.46921 * 118.73934 * 53.61118 * 18 17 16
28 28 C 1.53047 * 109.45374 * 56.97941 * 11 10 8
29 29 H 1.08003 * 120.00294 * 179.97438 * 1 2 3
30 30 H 1.08000 * 119.99577 * 359.97438 * 1 2 3
31 31 H 1.08000 * 119.99577 * 180.02562 * 2 1 3
32 32 H 1.09000 * 109.47355 * 305.93222 * 5 3 2
33 33 H 1.08996 * 109.46781 * 65.93764 * 5 3 2
34 34 H 1.08995 * 109.46912 * 303.25234 * 6 5 3
35 35 H 1.08997 * 109.47164 * 63.25313 * 6 5 3
36 36 H 1.08993 * 109.46583 * 183.25361 * 6 5 3
37 37 H 1.08999 * 109.47306 * 306.38013 * 7 3 2
38 38 H 1.09006 * 109.46951 * 186.38757 * 7 3 2
39 39 H 0.96998 * 120.00114 * 4.73813 * 10 8 7
40 40 H 1.09000 * 109.47256 * 61.87451 * 12 11 10
41 41 H 1.08995 * 109.47109 * 181.88086 * 12 11 10
42 42 H 1.08996 * 109.47563 * 303.61010 * 13 12 11
43 43 H 1.09007 * 109.47059 * 63.61085 * 13 12 11
44 44 H 1.08993 * 109.47055 * 175.09669 * 15 14 13
45 45 H 1.09005 * 109.46876 * 295.09483 * 15 14 13
46 46 H 1.08996 * 109.47062 * 55.09564 * 15 14 13
47 47 H 1.09003 * 109.49220 * 61.30347 * 16 11 10
48 48 H 1.08999 * 109.49401 * 181.40144 * 16 11 10
49 49 H 1.08998 * 109.58479 * 185.57772 * 17 16 11
50 50 H 1.08997 * 109.58822 * 65.15147 * 17 16 11
51 51 H 0.97001 * 119.99962 * 180.02562 * 22 21 19
52 52 H 1.08999 * 109.58533 * 186.60169 * 27 18 17
53 53 H 1.09005 * 109.70256 * 66.24664 * 27 18 17
54 54 H 1.09002 * 109.49652 * 178.60329 * 28 11 10
55 55 H 1.08999 * 109.49703 * 298.70216 * 28 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 1 1.3553 2.1335 0.0005
5 6 2.9432 1.3860 1.2493
6 6 3.5939 2.7687 1.3260
7 6 2.9431 1.3861 -1.2493
8 6 2.0694 1.4643 -2.4746
9 8 0.8633 1.4002 -2.3645
10 7 2.6285 1.6000 -3.6934
11 6 1.7789 1.7802 -4.8732
12 6 0.9053 0.5391 -5.0666
13 6 1.7979 -0.6944 -5.2169
14 8 0.9863 -1.8405 -5.4812
15 6 1.7139 -3.0694 -5.5297
16 6 2.6586 1.9819 -6.1091
17 6 3.5564 3.2051 -5.8978
18 7 2.7114 4.3597 -5.5636
19 6 2.8058 5.5237 -6.2788
20 1 3.0576 5.4934 -7.3287
21 6 2.5782 6.7424 -5.6545
22 7 2.4646 6.7996 -4.3444
23 14 2.4328 8.3012 -6.6736
24 1 1.2994 8.1675 -7.6237
25 1 2.1914 9.4590 -5.7755
26 1 3.6915 8.5161 -7.4316
27 6 1.7629 4.2416 -4.4478
28 6 0.8853 3.0068 -4.6753
29 1 -0.5401 -0.9353 -0.0004
30 1 -0.5399 0.9353 0.0004
31 1 1.8500 -0.9353 -0.0004
32 1 2.3308 1.2229 2.1361
33 1 3.7187 0.6218 1.1976
34 1 4.1597 2.9551 0.4132
35 1 2.8204 3.5287 1.4357
36 1 4.2652 2.8070 2.1838
37 1 3.5731 0.4985 -1.3083
38 1 3.5718 2.2748 -1.1939
39 1 3.5935 1.5783 -3.7895
40 1 0.2552 0.4138 -4.2007
41 1 0.2973 0.6589 -5.9632
42 1 2.4919 -0.5422 -6.0435
43 1 2.3591 -0.8513 -4.2956
44 1 1.0175 -3.8995 -5.6476
45 1 2.4031 -3.0505 -6.3740
46 1 2.2762 -3.1954 -4.6044
47 1 3.2780 1.0982 -6.2629
48 1 2.0271 2.1408 -6.9832
49 1 4.1130 3.4120 -6.8118
50 1 4.2509 3.0118 -5.0804
51 1 2.3052 7.6511 -3.9081
52 1 1.1363 5.1324 -4.4051
53 1 2.3093 4.1339 -3.5108
54 1 0.2705 3.1560 -5.5629
55 1 0.2425 2.8526 -3.8086
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001151259498.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:29:20
Heat of formation + Delta-G solvation = -73.503224 kcal
Electronic energy + Delta-G solvation = -32232.696735 eV
Core-core repulsion = 28269.691711 eV
Total energy + Delta-G solvation = -3963.005025 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.67 seconds
Orbital eigenvalues (eV)
-41.60213 -39.39360 -38.59685 -37.40828 -36.07875 -33.66310 -33.14880 -32.88894
-31.77952 -30.52928 -30.05098 -27.63997 -26.45993 -26.02143 -24.62350 -23.69314
-22.45242 -21.90321 -21.49857 -20.39507 -20.05385 -18.78664 -18.09854 -17.44872
-16.95408 -16.81422 -16.43101 -16.23954 -15.90046 -15.70680 -15.42572 -15.25029
-15.14998 -14.90181 -14.67277 -14.45829 -14.25219 -13.97561 -13.87681 -13.70768
-13.19461 -13.13851 -13.00169 -12.78120 -12.74076 -12.64125 -12.58211 -12.44223
-12.27016 -12.15527 -12.06245 -11.92947 -11.88533 -11.75909 -11.53307 -11.30839
-11.28088 -11.22437 -10.57863 -10.52142 -10.37435 -9.95641 -9.74571 -8.56852
-7.84028 -5.35391 1.46147 1.48593 1.54503 1.58831 1.92280 2.41667
2.51774 2.84555 3.32085 3.72472 3.74433 3.86014 3.95619 3.97257
4.06064 4.15983 4.21633 4.37026 4.40472 4.45009 4.47826 4.53348
4.55170 4.56929 4.59583 4.61888 4.67170 4.72023 4.76753 4.81725
4.84511 4.95533 5.01563 5.02497 5.08718 5.10123 5.14836 5.18329
5.20997 5.22238 5.33987 5.37543 5.39072 5.53420 5.54127 5.65716
5.75269 5.83466 5.87004 6.12077 6.28490 6.43511 6.83150 7.18745
7.54723 7.89579 8.41955 9.20537
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.008768 B = 0.004297 C = 0.003147
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3192.621624 B = 6514.707607 C = 8895.450341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.145 4.145
3 C -0.042 4.042
4 H 0.049 0.951
5 C -0.106 4.106
6 C -0.158 4.158
7 C -0.131 4.131
8 C 0.508 3.492
9 O -0.558 6.558
10 N -0.712 5.712
11 C 0.206 3.794
12 C -0.118 4.118
13 C 0.076 3.924
14 O -0.420 6.420
15 C 0.026 3.974
16 C -0.128 4.128
17 C 0.143 3.857
18 N -0.607 5.607
19 C -0.263 4.263
20 H 0.066 0.934
21 C -0.047 4.047
22 N -0.934 5.934
23 Si 0.964 3.036
24 H -0.281 1.281
25 H -0.297 1.297
26 H -0.272 1.272
27 C 0.199 3.801
28 C -0.138 4.138
29 H 0.098 0.902
30 H 0.074 0.926
31 H 0.120 0.880
32 H 0.065 0.935
33 H 0.082 0.918
34 H 0.055 0.945
35 H 0.039 0.961
36 H 0.067 0.933
37 H 0.119 0.881
38 H 0.098 0.902
39 H 0.406 0.594
40 H 0.065 0.935
41 H 0.065 0.935
42 H 0.064 0.936
43 H 0.051 0.949
44 H 0.094 0.906
45 H 0.052 0.948
46 H 0.048 0.952
47 H 0.096 0.904
48 H 0.067 0.933
49 H 0.057 0.943
50 H 0.027 0.973
51 H 0.247 0.753
52 H 0.038 0.962
53 H -0.002 1.002
54 H 0.047 0.953
55 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.711 -19.035 5.813 20.453
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.163 4.163
3 C -0.061 4.061
4 H 0.067 0.933
5 C -0.143 4.143
6 C -0.215 4.215
7 C -0.170 4.170
8 C 0.296 3.704
9 O -0.437 6.437
10 N -0.364 5.364
11 C 0.120 3.880
12 C -0.157 4.157
13 C 0.000 4.000
14 O -0.340 6.340
15 C -0.069 4.069
16 C -0.167 4.167
17 C 0.018 3.982
18 N -0.330 5.330
19 C -0.393 4.393
20 H 0.083 0.917
21 C -0.242 4.242
22 N -0.580 5.580
23 Si 0.792 3.208
24 H -0.207 1.207
25 H -0.223 1.223
26 H -0.198 1.198
27 C 0.073 3.927
28 C -0.178 4.178
29 H 0.116 0.884
30 H 0.093 0.907
31 H 0.137 0.863
32 H 0.084 0.916
33 H 0.101 0.899
34 H 0.074 0.926
35 H 0.058 0.942
36 H 0.086 0.914
37 H 0.137 0.863
38 H 0.116 0.884
39 H 0.242 0.758
40 H 0.084 0.916
41 H 0.083 0.917
42 H 0.082 0.918
43 H 0.069 0.931
44 H 0.112 0.888
45 H 0.071 0.929
46 H 0.066 0.934
47 H 0.114 0.886
48 H 0.086 0.914
49 H 0.076 0.924
50 H 0.045 0.955
51 H 0.056 0.944
52 H 0.056 0.944
53 H 0.016 0.984
54 H 0.066 0.934
55 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 3.650 -18.901 5.947 20.148
hybrid contribution 0.114 1.473 -0.427 1.538
sum 3.764 -17.428 5.519 18.665
Atomic orbital electron populations
1.23679 0.96566 1.00771 1.00687 1.22803 0.95691 0.97754 1.00025
1.20078 0.96325 0.95725 0.93958 0.93254 1.21475 0.98759 0.97918
0.96172 1.21872 1.00588 0.96810 1.02273 1.21793 0.98474 1.05602
0.91172 1.21081 0.89213 0.74965 0.85181 1.90634 1.16262 1.50097
1.86694 1.46035 1.10346 1.73895 1.06164 1.19872 0.90305 0.92395
0.85469 1.21786 0.98616 0.92797 1.02460 1.22470 0.93009 0.84713
0.99844 1.87841 1.36851 1.16368 1.92966 1.22905 0.97570 0.85654
1.00817 1.22288 0.98951 0.99302 0.96140 1.21054 0.92008 0.86782
0.98356 1.44198 1.41450 1.10734 1.36633 1.19464 1.43160 0.84702
0.91995 0.91657 1.25874 1.01578 1.00628 0.96154 1.70137 1.54436
1.24747 1.08637 0.85402 0.78327 0.79278 0.77773 1.20716 1.22313
1.19780 1.20265 0.90165 0.93956 0.88327 1.22349 0.98511 0.96256
1.00662 0.88364 0.90705 0.86265 0.91585 0.89915 0.92564 0.94158
0.91357 0.86302 0.88390 0.75775 0.91596 0.91662 0.91798 0.93114
0.88772 0.92947 0.93381 0.88562 0.91402 0.92402 0.95468 0.94391
0.94371 0.98366 0.93431 0.92315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.65 13.22 67.78 0.90 -3.76 16
2 C -0.14 -3.32 7.80 25.64 0.20 -3.12 16
3 C -0.04 -0.97 1.79 -11.54 -0.02 -0.99 16
4 H 0.05 1.47 7.60 -2.39 -0.02 1.45 16
5 C -0.11 -1.88 5.38 30.60 0.16 -1.72 16
6 C -0.16 -3.03 9.76 71.98 0.70 -2.32 16
7 C -0.13 -2.90 5.06 29.85 0.15 -2.75 16
8 C 0.51 15.06 6.93 87.66 0.61 15.66 16
9 O -0.56 -20.26 10.42 -3.04 -0.03 -20.30 16
10 N -0.71 -19.90 3.29 -422.79 -1.39 -21.29 16
11 C 0.21 6.54 0.35 3.63 0.00 6.54 16
12 C -0.12 -3.57 4.44 30.59 0.14 -3.44 16
13 C 0.08 1.86 5.49 71.98 0.40 2.25 16
14 O -0.42 -11.03 10.70 -148.98 -1.59 -12.62 16
15 C 0.03 0.46 11.01 113.37 1.25 1.71 16
16 C -0.13 -3.78 4.68 30.67 0.14 -3.64 16
17 C 0.14 5.30 6.24 86.36 0.54 5.83 16
18 N -0.61 -29.43 2.98 -699.11 -2.09 -31.52 16
19 C -0.26 -14.24 9.58 84.03 0.80 -13.44 16
20 H 0.07 3.43 7.85 -2.91 -0.02 3.40 16
21 C -0.05 -2.61 5.06 84.86 0.43 -2.18 16
22 N -0.93 -55.54 11.06 21.65 0.24 -55.30 16
23 Si 0.96 45.06 29.57 68.60 2.03 47.09 16
24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16
26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
27 C 0.20 9.80 4.99 86.36 0.43 10.23 16
28 C -0.14 -5.69 4.62 30.67 0.14 -5.55 16
29 H 0.10 2.24 8.06 -2.91 -0.02 2.22 16
30 H 0.07 2.23 7.83 -2.91 -0.02 2.21 16
31 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16
32 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16
33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.06 1.11 6.33 -2.39 -0.02 1.09 16
35 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16
36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
37 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16
38 H 0.10 2.19 6.27 -2.38 -0.01 2.17 16
39 H 0.41 9.47 7.37 -92.71 -0.68 8.79 16
40 H 0.07 2.35 6.27 -2.39 -0.01 2.34 16
41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
42 H 0.06 1.35 6.27 -2.39 -0.01 1.34 16
43 H 0.05 1.17 7.65 -2.38 -0.02 1.16 16
44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
45 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16
46 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16
47 H 0.10 2.13 6.33 -2.39 -0.02 2.12 16
48 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16
49 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16
50 H 0.03 0.95 7.00 -2.39 -0.02 0.94 16
51 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16
52 H 0.04 2.21 6.13 -2.39 -0.01 2.20 16
53 H 0.00 -0.09 7.65 -2.38 -0.02 -0.11 16
54 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
55 H 0.06 2.59 6.17 -2.39 -0.01 2.57 16
Total: -1.00 -69.12 414.34 4.30 -64.81
By element:
Atomic # 1 Polarization: 29.66 SS G_CDS: 0.17 Total: 29.82 kcal
Atomic # 6 Polarization: -7.66 SS G_CDS: 6.97 Total: -0.69 kcal
Atomic # 7 Polarization: -104.88 SS G_CDS: -3.24 Total: -108.12 kcal
Atomic # 8 Polarization: -31.29 SS G_CDS: -1.63 Total: -32.92 kcal
Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal
Total: -69.12 4.30 -64.81 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001151259498.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.690 kcal
(2) G-P(sol) polarization free energy of solvation -69.116 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.67 seconds