Wall clock time and date at job start Tue Mar 31 2020 23:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 119.99996 * 2 1 4 4 H 1.09004 * 109.46971 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46915 * 240.00096 * 3 2 1 6 6 C 1.52996 * 109.47337 * 64.99739 * 5 3 2 7 7 C 1.52997 * 109.47397 * 119.99600 * 3 2 1 8 8 C 1.50702 * 109.47428 * 295.00365 * 7 3 2 9 9 O 1.21289 * 119.99466 * 359.97438 * 8 7 3 10 10 N 1.34769 * 120.00040 * 179.97438 * 8 7 3 11 11 C 1.46507 * 119.99992 * 185.10574 * 10 8 7 12 12 C 1.53004 * 109.44737 * 299.49762 * 11 10 8 13 13 C 1.53006 * 109.46600 * 302.42479 * 12 11 10 14 14 O 1.42904 * 109.46631 * 174.79097 * 13 12 11 15 15 C 1.42899 * 113.99561 * 180.02562 * 14 13 12 16 16 C 1.53032 * 109.46109 * 179.52424 * 11 10 8 17 17 C 1.53185 * 109.31846 * 301.34755 * 16 11 10 18 18 N 1.46926 * 108.77118 * 305.36472 * 17 16 11 19 19 C 1.36942 * 120.63354 * 233.58057 * 18 17 16 20 20 H 1.08001 * 119.99142 * 32.26175 * 19 18 17 21 21 C 1.38806 * 120.00706 * 212.26447 * 19 18 17 22 22 N 1.31621 * 119.99651 * 11.35101 * 21 19 18 23 23 Si 1.86789 * 120.00301 * 191.35102 * 21 19 18 24 24 H 1.48498 * 109.47412 * 90.00046 * 23 21 19 25 25 H 1.48507 * 109.47378 * 209.99959 * 23 21 19 26 26 H 1.48501 * 109.47291 * 329.99997 * 23 21 19 27 27 C 1.46928 * 118.74066 * 53.60663 * 18 17 16 28 28 C 1.53042 * 109.45699 * 59.45644 * 11 10 8 29 29 H 1.08005 * 119.99780 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00390 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99896 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46846 * 185.00317 * 5 3 2 33 33 H 1.09006 * 109.46844 * 304.99658 * 5 3 2 34 34 H 1.09000 * 109.46991 * 179.97438 * 6 5 3 35 35 H 1.08994 * 109.46982 * 299.99816 * 6 5 3 36 36 H 1.08996 * 109.47094 * 60.00192 * 6 5 3 37 37 H 1.08990 * 109.47180 * 174.99949 * 7 3 2 38 38 H 1.09001 * 109.46869 * 54.99694 * 7 3 2 39 39 H 0.96999 * 120.00548 * 5.10926 * 10 8 7 40 40 H 1.08998 * 109.47625 * 62.42384 * 12 11 10 41 41 H 1.09005 * 109.46694 * 182.43333 * 12 11 10 42 42 H 1.08994 * 109.47356 * 294.79520 * 13 12 11 43 43 H 1.08997 * 109.46946 * 54.79564 * 13 12 11 44 44 H 1.08996 * 109.47647 * 300.00260 * 15 14 13 45 45 H 1.08997 * 109.47339 * 60.00576 * 15 14 13 46 46 H 1.09003 * 109.46915 * 180.02562 * 15 14 13 47 47 H 1.09001 * 109.49888 * 181.39229 * 16 11 10 48 48 H 1.09007 * 109.49789 * 61.30079 * 16 11 10 49 49 H 1.09002 * 109.58794 * 65.14920 * 17 16 11 50 50 H 1.09000 * 109.58973 * 185.43500 * 17 16 11 51 51 H 0.97002 * 120.00067 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.58389 * 66.18205 * 27 18 17 53 53 H 1.08999 * 109.58446 * 186.59938 * 27 18 17 54 54 H 1.08998 * 109.49976 * 298.70112 * 28 11 10 55 55 H 1.09005 * 109.49575 * 178.60973 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2493 6 6 2.0564 1.4306 -2.4953 7 6 2.9431 1.3862 1.2492 8 6 2.0697 1.4301 2.4766 9 8 0.8625 1.3999 2.3632 10 7 2.6300 1.5028 3.7001 11 6 1.7878 1.4327 4.8969 12 6 0.7912 2.5936 4.8872 13 6 1.5528 3.9188 4.8157 14 8 0.6229 4.9959 4.6844 15 6 1.2342 6.2853 4.6080 16 6 2.6675 1.5262 6.1456 17 6 3.6866 0.3825 6.1344 18 7 2.9666 -0.8909 5.9974 19 6 3.1694 -1.9069 6.8929 20 1 3.4002 -1.6803 7.9233 21 6 3.0784 -3.2279 6.4763 22 7 3.0209 -3.5103 5.1920 23 14 3.0378 -4.6045 7.7381 24 1 1.6301 -4.8873 8.1171 25 1 3.6490 -5.8269 7.1571 26 1 3.8020 -4.1940 8.9434 27 6 2.0253 -1.0538 4.8811 28 6 1.0250 0.1060 4.9064 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 3.5540 2.2878 -1.2056 33 1 3.5906 0.5104 -1.2951 34 1 2.6831 1.4887 -3.3853 35 1 1.4456 0.5289 -2.5389 36 1 1.4090 2.3062 -2.4495 37 1 3.5539 2.2878 1.2056 38 1 3.5905 0.5105 1.2952 39 1 3.5909 1.6017 3.7885 40 1 0.1367 2.5035 4.0203 41 1 0.1935 2.5669 5.7983 42 1 2.1368 4.0519 5.7262 43 1 2.2204 3.9081 3.9541 44 1 1.8119 6.4678 5.5141 45 1 1.8949 6.3235 3.7420 46 1 0.4619 7.0483 4.5102 47 1 2.0441 1.4493 7.0364 48 1 3.1927 2.4814 6.1500 49 1 4.3686 0.5090 5.2935 50 1 4.2513 0.3870 7.0667 51 1 2.9569 -4.4334 4.9009 52 1 2.5719 -1.0445 3.9380 53 1 1.4923 -1.9986 4.9875 54 1 0.3810 0.0504 4.0287 55 1 0.4170 0.0425 5.8089 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151259499.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:24 Heat of formation + Delta-G solvation = -74.709234 kcal Electronic energy + Delta-G solvation = -32157.041322 eV Core-core repulsion = 28193.984001 eV Total energy + Delta-G solvation = -3963.057321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.59491 -39.36938 -38.59544 -37.44843 -36.07185 -33.65176 -33.06224 -32.56145 -31.78833 -30.88194 -30.27676 -27.64444 -26.42704 -25.61718 -24.60279 -23.64620 -22.52985 -22.11643 -21.56058 -20.38188 -20.03881 -18.77145 -17.92180 -17.44416 -16.95400 -16.81452 -16.36668 -16.29742 -15.74218 -15.70813 -15.53661 -15.32985 -15.15191 -14.84313 -14.67879 -14.58160 -14.27645 -14.09400 -13.85192 -13.67344 -13.18177 -13.03546 -12.95854 -12.81859 -12.73314 -12.67439 -12.58400 -12.25132 -12.19343 -12.10222 -12.04824 -12.00106 -11.91679 -11.77493 -11.63928 -11.34179 -11.25200 -11.21226 -10.59384 -10.53478 -10.38303 -9.91460 -9.76960 -8.57450 -7.84830 -5.35937 1.45436 1.47394 1.55248 1.58734 1.92442 2.42044 2.51292 2.85164 3.31255 3.72183 3.75303 3.88284 3.94247 3.99785 4.06051 4.16177 4.23195 4.37332 4.41543 4.45306 4.48712 4.49875 4.55427 4.56053 4.61477 4.65714 4.70570 4.72289 4.78611 4.84309 4.85208 4.95369 5.05013 5.05284 5.08363 5.10414 5.11664 5.15275 5.20591 5.21020 5.34494 5.38304 5.43316 5.49588 5.52228 5.65996 5.74167 5.83924 5.90211 6.08110 6.29593 6.43011 6.83388 7.18201 7.54892 7.88974 8.41585 9.19931 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.004251 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.797229 B = 6584.656952 C = 9037.728012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C -0.036 4.036 4 H 0.068 0.932 5 C -0.111 4.111 6 C -0.150 4.150 7 C -0.131 4.131 8 C 0.508 3.492 9 O -0.557 6.557 10 N -0.712 5.712 11 C 0.206 3.794 12 C -0.120 4.120 13 C 0.075 3.925 14 O -0.421 6.421 15 C 0.026 3.974 16 C -0.127 4.127 17 C 0.143 3.857 18 N -0.607 5.607 19 C -0.262 4.262 20 H 0.066 0.934 21 C -0.046 4.046 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.200 3.800 28 C -0.136 4.136 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.406 0.594 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.027 0.973 50 H 0.058 0.942 51 H 0.247 0.753 52 H -0.001 1.001 53 H 0.035 0.965 54 H 0.056 0.944 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 17.838 -8.831 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.166 4.166 3 C -0.055 4.055 4 H 0.087 0.913 5 C -0.148 4.148 6 C -0.207 4.207 7 C -0.171 4.171 8 C 0.295 3.705 9 O -0.436 6.436 10 N -0.365 5.365 11 C 0.119 3.881 12 C -0.159 4.159 13 C -0.001 4.001 14 O -0.341 6.341 15 C -0.070 4.070 16 C -0.166 4.166 17 C 0.018 3.982 18 N -0.330 5.330 19 C -0.393 4.393 20 H 0.083 0.917 21 C -0.242 4.242 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.217 1.217 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.074 3.926 28 C -0.176 4.176 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.242 0.758 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.087 0.913 48 H 0.114 0.886 49 H 0.045 0.955 50 H 0.076 0.924 51 H 0.056 0.944 52 H 0.017 0.983 53 H 0.053 0.947 54 H 0.075 0.925 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.279 17.623 -8.968 19.815 hybrid contribution 0.272 -1.468 0.703 1.650 sum 1.552 16.155 -8.265 18.213 Atomic orbital electron populations 1.23618 0.96298 1.00753 1.00808 1.22795 0.95974 0.97946 0.99877 1.20091 0.96449 0.95320 0.93648 0.91311 1.21522 0.97599 1.02885 0.92840 1.21748 0.99867 1.01503 0.97617 1.21762 0.98450 1.05642 0.91238 1.21072 0.89206 0.74906 0.85266 1.90634 1.16119 1.49873 1.86939 1.46054 1.10968 1.74504 1.04964 1.19877 0.90264 0.92766 0.85151 1.21814 0.98600 0.92501 1.02943 1.22462 0.91383 0.85736 1.00498 1.87849 1.35264 1.16035 1.94918 1.22902 0.99375 0.83891 1.00790 1.22271 0.98472 0.99712 0.96161 1.21048 0.92867 0.85138 0.99157 1.44211 1.46038 1.12276 1.30509 1.19492 1.43111 0.86099 0.90573 0.91660 1.25864 1.01201 0.99972 0.97158 1.70151 1.55404 1.17754 1.14532 0.85340 0.77443 0.78986 0.79103 1.21732 1.22214 1.18998 1.20242 0.89302 0.94544 0.88472 1.22328 0.98642 0.96243 1.00412 0.89691 0.89227 0.88731 0.90049 0.91614 0.91677 0.93595 0.92944 0.86072 0.88709 0.75779 0.91281 0.91631 0.91900 0.92995 0.92919 0.93424 0.88764 0.91326 0.88605 0.95534 0.92393 0.94407 0.98265 0.94652 0.92542 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.22 13.22 67.78 0.90 -4.32 16 2 C -0.15 -4.09 6.76 25.64 0.17 -3.92 16 3 C -0.04 -0.82 1.82 -11.54 -0.02 -0.84 16 4 H 0.07 1.71 7.60 -2.39 -0.02 1.69 16 5 C -0.11 -1.89 5.39 30.59 0.16 -1.72 16 6 C -0.15 -2.53 9.73 71.98 0.70 -1.83 16 7 C -0.13 -2.87 5.17 29.85 0.15 -2.71 16 8 C 0.51 14.90 6.97 87.66 0.61 15.51 16 9 O -0.56 -19.96 10.44 -3.06 -0.03 -19.99 16 10 N -0.71 -19.85 3.13 -422.79 -1.32 -21.17 16 11 C 0.21 6.49 0.35 3.63 0.00 6.49 16 12 C -0.12 -3.62 4.38 30.60 0.13 -3.48 16 13 C 0.08 1.84 5.40 71.98 0.39 2.23 16 14 O -0.42 -11.11 10.70 -148.98 -1.59 -12.71 16 15 C 0.03 0.46 11.01 113.37 1.25 1.71 16 16 C -0.13 -3.73 4.69 30.67 0.14 -3.58 16 17 C 0.14 5.26 6.24 86.36 0.54 5.80 16 18 N -0.61 -29.33 2.98 -699.11 -2.08 -31.41 16 19 C -0.26 -14.18 9.57 84.03 0.80 -13.38 16 20 H 0.07 3.43 7.85 -2.91 -0.02 3.40 16 21 C -0.05 -2.58 5.02 84.86 0.43 -2.15 16 22 N -0.93 -55.38 11.16 21.65 0.24 -55.14 16 23 Si 0.96 45.03 29.57 68.60 2.03 47.06 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.20 9.81 4.99 86.36 0.43 10.24 16 28 C -0.14 -5.59 4.66 30.67 0.14 -5.44 16 29 H 0.08 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.09 2.66 7.83 -2.91 -0.02 2.63 16 31 H 0.09 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.04 0.88 7.38 -2.39 -0.02 0.86 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.41 9.53 7.29 -92.71 -0.68 8.86 16 40 H 0.07 2.47 6.11 -2.39 -0.01 2.46 16 41 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.06 1.32 6.73 -2.39 -0.02 1.30 16 43 H 0.05 1.20 7.36 -2.39 -0.02 1.18 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.10 2.10 6.54 -2.38 -0.02 2.08 16 49 H 0.03 0.93 6.95 -2.39 -0.02 0.91 16 50 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 51 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 52 H 0.00 -0.04 7.74 -2.39 -0.02 -0.06 16 53 H 0.03 2.04 6.20 -2.39 -0.01 2.02 16 54 H 0.06 2.47 6.35 -2.39 -0.02 2.46 16 55 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -68.87 416.66 4.34 -64.53 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.17 Total: 30.22 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 6.94 Total: -1.39 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.16 Total: -107.72 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.63 Total: -32.69 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.87 4.34 -64.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151259499.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.184 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds