Wall clock time and date at job start Wed Apr 1 2020 00:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 H 1.09005 * 109.46801 * 55.00316 * 3 2 1 5 5 O 1.42897 * 109.47574 * 295.00402 * 3 2 1 6 6 C 1.42894 * 114.00393 * 89.99429 * 5 3 2 7 7 C 1.54894 * 110.75470 * 96.67370 * 6 5 3 8 8 C 1.54262 * 104.19525 * 156.25618 * 7 6 5 9 9 C 1.53877 * 106.59998 * 336.39103 * 8 7 6 10 10 C 1.54267 * 106.59867 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.47120 * 174.99843 * 3 2 1 12 12 O 1.21278 * 120.00075 * 119.99997 * 11 3 2 13 13 N 1.34777 * 119.99864 * 300.00216 * 11 3 2 14 14 C 1.46505 * 119.99841 * 179.97438 * 13 11 3 15 15 C 1.53001 * 109.46956 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46889 * 175.45599 * 15 14 13 17 17 C 1.53000 * 115.54703 * 279.32589 * 16 15 14 18 18 N 1.46496 * 109.47291 * 294.94756 * 17 16 15 19 19 C 1.36942 * 119.99988 * 174.37129 * 18 17 16 20 20 H 1.07994 * 119.99787 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99777 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47334 * 89.99920 * 23 21 19 25 25 H 1.48498 * 109.46960 * 209.99804 * 23 21 19 26 26 H 1.48497 * 109.47347 * 329.99823 * 23 21 19 27 27 C 1.52996 * 117.49706 * 133.61769 * 16 15 14 28 28 C 1.52992 * 117.49754 * 64.99544 * 16 15 14 29 29 H 1.08998 * 109.47469 * 299.99802 * 1 2 3 30 30 H 1.09000 * 109.47419 * 60.00054 * 1 2 3 31 31 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47093 * 240.00492 * 2 1 3 33 33 H 1.09001 * 109.46714 * 119.99707 * 2 1 3 34 34 H 1.08997 * 110.67364 * 333.24013 * 6 5 3 35 35 H 1.09002 * 110.48338 * 37.58193 * 7 6 5 36 36 H 1.08998 * 110.48679 * 274.94073 * 7 6 5 37 37 H 1.09000 * 110.03509 * 217.10782 * 8 7 6 38 38 H 1.08994 * 110.03161 * 95.67765 * 8 7 6 39 39 H 1.09004 * 110.02707 * 119.28464 * 9 8 7 40 40 H 1.09001 * 110.03008 * 240.66593 * 9 8 7 41 41 H 1.08999 * 110.48283 * 142.28419 * 10 9 8 42 42 H 1.08994 * 110.48544 * 264.79502 * 10 9 8 43 43 H 0.96999 * 120.00438 * 0.02562 * 13 11 3 44 44 H 1.09000 * 109.46900 * 299.99916 * 14 13 11 45 45 H 1.08996 * 109.47237 * 59.99849 * 14 13 11 46 46 H 1.08996 * 109.47322 * 295.45584 * 15 14 13 47 47 H 1.09004 * 109.46940 * 55.45702 * 15 14 13 48 48 H 1.09004 * 109.47421 * 54.95466 * 17 16 15 49 49 H 1.09004 * 109.46995 * 174.95207 * 17 16 15 50 50 H 0.96998 * 119.99955 * 354.37802 * 18 17 16 51 51 H 0.97010 * 120.00011 * 179.97438 * 22 21 19 52 52 H 1.08999 * 117.50122 * 0.02562 * 27 16 15 53 53 H 1.09006 * 117.49969 * 145.01829 * 27 16 15 54 54 H 1.08999 * 117.50271 * 214.97671 * 28 16 15 55 55 H 1.09007 * 117.50062 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 8 1.6618 2.0815 -1.2209 6 6 0.3926 2.7356 -1.1659 7 6 0.5659 4.2462 -0.8703 8 6 -0.7181 4.8912 -1.4316 9 6 -1.2597 3.9307 -2.5048 10 6 -0.2855 2.7357 -2.5588 11 6 3.5418 1.4444 0.1239 12 8 4.2216 1.9436 -0.7477 13 7 4.1297 0.8912 1.2032 14 6 5.5898 0.8925 1.3233 15 6 5.9945 0.2091 2.6311 16 6 7.5195 0.1092 2.7035 17 6 8.1432 -1.0459 1.9175 18 7 7.7159 -2.3201 2.5004 19 6 8.0560 -3.4993 1.8927 20 1 8.6395 -3.4898 0.9840 21 6 7.6507 -4.7067 2.4448 22 7 6.9400 -4.7182 3.5526 23 14 8.1152 -6.3152 1.6163 24 1 9.4156 -6.7909 2.1528 25 1 7.0668 -7.3317 1.8861 26 1 8.2324 -6.1017 0.1514 27 6 8.1925 0.5159 4.0159 28 6 8.3101 1.4165 2.7847 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 -0.2509 2.2651 -0.4226 35 1 1.4447 4.6368 -1.3834 36 1 0.6417 4.4186 0.2032 37 1 -0.4857 5.8578 -1.8786 38 1 -1.4526 5.0144 -0.6358 39 1 -2.2571 3.5877 -2.2297 40 1 -1.2909 4.4314 -3.4725 41 1 -0.8313 1.8055 -2.7169 42 1 0.4540 2.8817 -3.3461 43 1 3.5861 0.4915 1.9001 44 1 6.0240 0.3532 0.4815 45 1 5.9534 1.9200 1.3231 46 1 5.6282 0.7936 3.4750 47 1 5.5626 -0.7911 2.6671 48 1 7.8189 -0.9949 0.8780 49 1 9.2297 -0.9716 1.9632 50 1 7.1921 -2.3286 3.3167 51 1 6.6565 -5.5620 3.9382 52 1 7.5489 0.8542 4.8279 53 1 9.0799 -0.0396 4.3198 54 1 9.2747 1.4537 2.2786 55 1 7.7437 2.3479 2.7870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167366655.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:24 Heat of formation + Delta-G solvation = -90.343804 kcal Electronic energy + Delta-G solvation = -29925.621619 eV Core-core repulsion = 25961.886332 eV Total energy + Delta-G solvation = -3963.735287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -41.25522 -39.91890 -39.38326 -37.23756 -36.14924 -35.75648 -34.05693 -32.78008 -31.33106 -29.74098 -29.30319 -27.89809 -27.31816 -24.67401 -24.48135 -23.25472 -22.85935 -21.75282 -21.56893 -21.10441 -19.99661 -19.04084 -18.44141 -18.25335 -17.02087 -16.86977 -16.56871 -16.48126 -16.20064 -15.90328 -15.72010 -15.34770 -15.20805 -14.94938 -14.75071 -14.43631 -14.26036 -14.10628 -13.83082 -13.50051 -13.33661 -13.18314 -13.04047 -13.01416 -12.93775 -12.80139 -12.57006 -12.33088 -12.27454 -12.15217 -12.06881 -12.04475 -11.93279 -11.89541 -11.83120 -11.36036 -11.26501 -11.09740 -10.95202 -10.87223 -10.58241 -10.33579 -10.13543 -8.97333 -7.94940 -5.22211 1.46128 1.46969 1.50466 1.55524 1.84665 2.53789 2.84287 2.92415 3.37772 3.56966 3.61970 3.71626 3.81499 3.82908 3.85150 3.94853 3.97628 4.00513 4.08411 4.21963 4.25510 4.33849 4.41075 4.46921 4.49012 4.49935 4.60462 4.63428 4.64754 4.72923 4.80221 4.84036 4.89922 4.93254 4.97114 5.04337 5.07340 5.08230 5.09469 5.17159 5.17983 5.22683 5.26808 5.27299 5.34227 5.34731 5.37925 5.40924 5.46367 5.48889 6.19150 6.27680 6.52950 7.18320 7.34982 8.10688 8.37442 9.28104 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.002270 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.588278 B =12334.416968 C =13812.723989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.142 4.142 3 C 0.081 3.919 4 H 0.116 0.884 5 O -0.374 6.374 6 C 0.067 3.933 7 C -0.151 4.151 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.124 4.124 11 C 0.507 3.493 12 O -0.574 6.574 13 N -0.713 5.713 14 C 0.134 3.866 15 C -0.076 4.076 16 C -0.140 4.140 17 C 0.187 3.813 18 N -0.734 5.734 19 C -0.246 4.246 20 H 0.068 0.932 21 C -0.070 4.070 22 N -0.964 5.964 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.275 1.275 27 C -0.162 4.162 28 C -0.152 4.152 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.415 0.585 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.015 0.985 49 H 0.012 0.988 50 H 0.378 0.622 51 H 0.252 0.748 52 H 0.110 0.890 53 H 0.079 0.921 54 H 0.094 0.906 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 19.827 -3.533 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C 0.020 3.980 4 H 0.134 0.866 5 O -0.293 6.293 6 C 0.010 3.990 7 C -0.188 4.188 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.161 4.161 11 C 0.293 3.707 12 O -0.453 6.453 13 N -0.367 5.367 14 C 0.011 3.989 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.061 3.939 18 N -0.377 5.377 19 C -0.378 4.378 20 H 0.086 0.914 21 C -0.263 4.263 22 N -0.614 5.614 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.200 1.200 27 C -0.199 4.199 28 C -0.190 4.190 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.033 0.967 49 H 0.030 0.970 50 H 0.210 0.790 51 H 0.060 0.940 52 H 0.128 0.872 53 H 0.098 0.902 54 H 0.113 0.887 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.268 20.092 -4.476 27.521 hybrid contribution 0.339 -1.479 0.166 1.527 sum -17.929 18.612 -4.310 26.200 Atomic orbital electron populations 1.21932 0.93013 1.03317 1.02906 1.22048 0.98724 0.93884 1.03406 1.22022 0.89973 0.96026 0.90006 0.86646 1.88055 1.37655 1.70934 1.32607 1.23699 0.83977 0.92059 0.99265 1.22869 0.98845 0.95726 1.01409 1.22047 0.96182 0.98730 0.98763 1.22081 0.98863 0.95064 0.99675 1.22440 0.98146 0.99783 0.95770 1.21047 0.91077 0.77296 0.81260 1.90690 1.66559 1.46704 1.41357 1.45886 1.08027 1.59683 1.23062 1.21176 0.79343 1.00618 0.97800 1.21100 0.92729 1.00945 0.96551 1.21409 0.94018 0.96535 1.02129 1.20232 0.95082 0.84181 0.94441 1.42408 1.64791 1.00592 1.29870 1.19577 1.26762 0.85717 1.05709 0.91420 1.25465 1.01522 1.00636 0.98693 1.69794 1.43399 1.25727 1.22496 0.85218 0.77028 0.79907 0.78078 1.21430 1.21842 1.20007 1.23010 1.02561 1.02855 0.91463 1.23056 1.01500 0.93463 1.00946 0.90490 0.91916 0.91411 0.92637 0.89240 0.88222 0.92922 0.90837 0.91428 0.90101 0.89940 0.91109 0.90295 0.92457 0.74826 0.94209 0.91057 0.88910 0.92054 0.96680 0.97035 0.78990 0.93956 0.87169 0.90195 0.88738 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.59 71.98 0.62 -1.35 16 2 C -0.14 -2.59 5.59 30.59 0.17 -2.42 16 3 C 0.08 1.68 2.68 29.85 0.08 1.76 16 4 H 0.12 1.64 7.78 -2.38 -0.02 1.62 16 5 O -0.37 -9.23 9.24 -129.94 -1.20 -10.43 16 6 C 0.07 1.12 2.01 31.90 0.06 1.18 16 7 C -0.15 -2.38 6.55 31.67 0.21 -2.18 16 8 C -0.12 -1.34 6.80 31.32 0.21 -1.13 16 9 C -0.12 -1.29 6.80 31.32 0.21 -1.08 16 10 C -0.12 -1.89 6.47 31.68 0.21 -1.69 16 11 C 0.51 14.42 7.23 87.66 0.63 15.06 16 12 O -0.57 -22.27 16.50 16.01 0.26 -22.01 16 13 N -0.71 -17.34 5.42 -463.06 -2.51 -19.85 16 14 C 0.13 3.78 5.51 86.38 0.48 4.25 16 15 C -0.08 -2.08 5.24 30.60 0.16 -1.92 16 16 C -0.14 -4.35 1.52 -52.18 -0.08 -4.43 16 17 C 0.19 7.74 6.10 86.38 0.53 8.27 16 18 N -0.73 -37.37 5.30 -343.45 -1.82 -39.19 16 19 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 20 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 22 N -0.96 -58.22 13.06 21.65 0.28 -57.94 16 23 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 27 C -0.16 -4.44 9.90 30.59 0.30 -4.14 16 28 C -0.15 -3.74 9.57 30.59 0.29 -3.45 16 29 H 0.08 0.67 8.01 -2.39 -0.02 0.65 16 30 H 0.06 0.81 5.54 -2.39 -0.01 0.80 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.43 7.43 -2.39 -0.02 1.41 16 34 H 0.10 1.20 5.48 -2.39 -0.01 1.19 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.41 7.50 7.83 -92.71 -0.73 6.77 16 44 H 0.04 1.39 7.69 -2.39 -0.02 1.37 16 45 H 0.07 1.92 7.80 -2.39 -0.02 1.91 16 46 H 0.09 2.01 7.94 -2.39 -0.02 1.99 16 47 H 0.06 2.04 7.64 -2.38 -0.02 2.02 16 48 H 0.02 0.66 7.69 -2.39 -0.02 0.64 16 49 H 0.01 0.50 8.09 -2.38 -0.02 0.48 16 50 H 0.38 20.05 7.46 -92.71 -0.69 19.36 16 51 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 52 H 0.11 2.55 8.08 -2.39 -0.02 2.53 16 53 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 54 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 55 H 0.11 2.30 7.98 -2.38 -0.02 2.28 16 Total: -1.00 -74.45 432.35 1.88 -72.57 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.55 Total: 38.16 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 5.39 Total: -9.97 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -4.05 Total: -116.98 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.94 Total: -32.43 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -74.45 1.88 -72.57 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167366655.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.776 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds