Wall clock time and date at job start Tue Mar 31 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47362 * 2 1 4 4 H 1.09002 * 109.49403 * 55.02785 * 3 2 1 5 5 C 1.53087 * 109.48382 * 175.05477 * 3 2 1 6 6 C 1.53182 * 109.16042 * 62.37525 * 5 3 2 7 7 H 1.08999 * 109.61464 * 297.06740 * 6 5 3 8 8 C 1.53002 * 109.54188 * 176.84875 * 6 5 3 9 9 C 1.50702 * 109.47080 * 175.44355 * 8 6 5 10 10 O 1.21281 * 119.99707 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99860 * 180.02562 * 9 8 6 12 12 C 1.46508 * 119.99561 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.46781 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46898 * 185.22538 * 13 12 11 15 15 C 1.52994 * 115.55130 * 294.66205 * 14 13 12 16 16 N 1.46500 * 109.47180 * 279.22295 * 15 14 13 17 17 C 1.36937 * 119.99945 * 176.39760 * 16 15 14 18 18 H 1.07998 * 120.00059 * 359.72171 * 17 16 15 19 19 C 1.38815 * 119.99745 * 179.97438 * 17 16 15 20 20 N 1.31613 * 120.00238 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99698 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46574 * 90.00679 * 21 19 17 23 23 H 1.48500 * 109.46906 * 210.00087 * 21 19 17 24 24 H 1.48496 * 109.47438 * 330.00662 * 21 19 17 25 25 C 1.53000 * 117.51725 * 80.36500 * 14 13 12 26 26 C 1.52999 * 59.99974 * 107.47881 * 25 14 13 27 27 C 1.53179 * 109.03835 * 56.98152 * 6 5 3 28 28 C 1.53092 * 109.16181 * 303.02015 * 27 6 5 29 29 O 1.42904 * 109.41415 * 57.60744 * 28 27 6 30 30 H 1.08996 * 109.46907 * 300.00598 * 1 2 3 31 31 H 1.09010 * 109.47000 * 59.99690 * 1 2 3 32 32 H 1.08993 * 109.47477 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47261 * 240.00038 * 2 1 3 34 34 H 1.08996 * 109.46908 * 120.00063 * 2 1 3 35 35 H 1.08997 * 109.52319 * 302.47053 * 5 3 2 36 36 H 1.09005 * 109.52609 * 182.27884 * 5 3 2 37 37 H 1.09003 * 109.47115 * 55.44533 * 8 6 5 38 38 H 1.08997 * 109.47331 * 295.44156 * 8 6 5 39 39 H 0.96996 * 120.00196 * 0.02562 * 11 9 8 40 40 H 1.09003 * 109.47106 * 60.00236 * 12 11 9 41 41 H 1.08997 * 109.47069 * 300.00024 * 12 11 9 42 42 H 1.08998 * 109.47242 * 65.22325 * 13 12 11 43 43 H 1.09002 * 109.47084 * 305.22809 * 13 12 11 44 44 H 1.09006 * 109.47232 * 159.22082 * 15 14 13 45 45 H 1.09003 * 109.47367 * 39.22213 * 15 14 13 46 46 H 0.97001 * 120.00228 * 356.39695 * 16 15 14 47 47 H 0.96996 * 120.00082 * 180.02562 * 20 19 17 48 48 H 1.09001 * 117.49806 * 214.96743 * 25 14 13 49 49 H 1.08998 * 117.49925 * 359.97438 * 25 14 13 50 50 H 1.09000 * 117.50011 * 252.50466 * 26 25 14 51 51 H 1.08997 * 117.49772 * 107.49469 * 26 25 14 52 52 H 1.09001 * 109.51836 * 62.92587 * 27 6 5 53 53 H 1.09002 * 109.52312 * 183.04757 * 27 6 5 54 54 H 1.08998 * 109.47862 * 177.58983 * 28 27 6 55 55 H 1.09003 * 109.47964 * 297.62458 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 0.8420 5 6 3.5658 1.4445 0.1244 6 6 4.1705 0.7377 -1.0927 7 1 3.8507 -0.3042 -1.1069 8 6 5.6972 0.8036 -1.0166 9 6 6.2913 0.0128 -2.1536 10 8 5.5652 -0.5486 -2.9463 11 7 7.6297 -0.0714 -2.2888 12 6 8.2072 -0.8407 -3.3938 13 6 9.7340 -0.7758 -3.3171 14 6 10.3360 -1.4681 -4.5415 15 6 10.0812 -2.9734 -4.6403 16 7 11.0314 -3.6868 -3.7833 17 6 10.9470 -5.0472 -3.6518 18 1 10.1772 -5.5937 -4.1762 19 6 11.8478 -5.7232 -2.8402 20 7 12.7825 -5.0566 -2.1968 21 14 11.7322 -7.5790 -2.6602 22 1 12.5648 -8.2302 -3.7033 23 1 12.2218 -7.9773 -1.3160 24 1 10.3183 -8.0046 -2.8183 25 6 10.3894 -0.6734 -5.8479 26 6 11.6749 -0.9425 -5.0631 27 6 3.6902 1.4386 -2.3672 28 6 2.1595 1.4368 -2.3953 29 8 1.6621 2.0816 -1.2210 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8579 0.9186 1.0333 36 1 3.9267 2.4723 0.1652 37 1 6.0322 0.3839 -0.0681 38 1 6.0201 1.8421 -1.0887 39 1 8.2104 0.3767 -1.6541 40 1 7.8726 -0.4211 -4.3426 41 1 7.8840 -1.8791 -3.3216 42 1 10.0740 -1.2784 -2.4117 43 1 10.0527 0.2664 -3.2956 44 1 10.2098 -3.2967 -5.6733 45 1 9.0639 -3.1919 -4.3152 46 1 11.7204 -3.1955 -3.3091 47 1 13.4122 -5.5290 -1.6300 48 1 10.2430 -1.2231 -6.7777 49 1 9.9952 0.3427 -5.8353 50 1 12.1267 -0.1033 -4.5342 51 1 12.3742 -1.6691 -5.4766 52 1 4.0535 2.4663 -2.3767 53 1 4.0721 0.9092 -3.2401 54 1 1.8116 1.9720 -3.2789 55 1 1.7977 0.4091 -2.4267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167659144.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:20 Heat of formation + Delta-G solvation = -97.585208 kcal Electronic energy + Delta-G solvation = -29702.412773 eV Core-core repulsion = 25738.363475 eV Total energy + Delta-G solvation = -3964.049298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = -0.04 seconds Orbital eigenvalues (eV) -41.34487 -40.32841 -39.49730 -36.21903 -35.76719 -35.41904 -34.32821 -32.77159 -31.67263 -31.06727 -29.47575 -27.75596 -25.44711 -24.67732 -24.47962 -24.16427 -23.10313 -22.74002 -21.41868 -20.04595 -19.96779 -19.00979 -17.96367 -17.48792 -17.02055 -16.87132 -16.78422 -16.62333 -16.19821 -15.98417 -15.62692 -15.43426 -15.19653 -15.04144 -14.70433 -14.49072 -14.28104 -14.07661 -13.75078 -13.67454 -13.55280 -13.19315 -13.03382 -12.92562 -12.80778 -12.80354 -12.57883 -12.40109 -12.29640 -12.20307 -12.15063 -11.94487 -11.88576 -11.83618 -11.68576 -11.53478 -11.10916 -11.02085 -10.88201 -10.71355 -10.57191 -10.26123 -10.02386 -8.98686 -7.96314 -5.23922 1.44966 1.46227 1.54795 1.70176 2.23558 2.52800 2.89970 2.97496 3.36120 3.65856 3.73782 3.80383 3.81877 3.86525 3.93209 3.98445 4.06028 4.07073 4.18340 4.24919 4.31055 4.40694 4.42381 4.45835 4.50853 4.51933 4.62192 4.64499 4.67728 4.79548 4.83087 4.87060 4.89250 4.91399 4.95195 4.98871 5.04489 5.08249 5.10417 5.14164 5.18101 5.25845 5.27476 5.34117 5.35049 5.37051 5.39420 5.46551 5.46866 5.53794 6.26257 6.34770 6.61672 7.32650 7.33282 8.09615 8.35716 9.26859 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.002051 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.364875 B =13647.986216 C =15052.000312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.086 3.914 4 H 0.114 0.886 5 C -0.139 4.139 6 C -0.073 4.073 7 H 0.061 0.939 8 C -0.128 4.128 9 C 0.504 3.496 10 O -0.582 6.582 11 N -0.721 5.721 12 C 0.133 3.867 13 C -0.073 4.073 14 C -0.139 4.139 15 C 0.185 3.815 16 N -0.735 5.735 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.072 4.072 20 N -0.965 5.965 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.274 1.274 25 C -0.149 4.149 26 C -0.165 4.165 27 C -0.150 4.150 28 C 0.059 3.941 29 O -0.390 6.390 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.011 0.989 45 H 0.018 0.982 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.091 0.909 49 H 0.118 0.882 50 H 0.110 0.890 51 H 0.074 0.926 52 H 0.070 0.930 53 H 0.069 0.931 54 H 0.096 0.904 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.723 20.482 4.691 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.029 3.971 4 H 0.131 0.869 5 C -0.176 4.176 6 C -0.092 4.092 7 H 0.079 0.921 8 C -0.168 4.168 9 C 0.292 3.708 10 O -0.462 6.462 11 N -0.373 5.373 12 C 0.008 3.992 13 C -0.111 4.111 14 C -0.140 4.140 15 C 0.058 3.942 16 N -0.378 5.378 17 C -0.378 4.378 18 H 0.087 0.913 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.199 1.199 25 C -0.187 4.187 26 C -0.202 4.202 27 C -0.187 4.187 28 C -0.018 4.018 29 O -0.309 6.309 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.251 0.749 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.128 0.872 51 H 0.092 0.908 52 H 0.089 0.911 53 H 0.087 0.913 54 H 0.114 0.886 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.432 20.077 4.086 28.237 hybrid contribution 0.986 -1.552 0.295 1.862 sum -18.445 18.525 4.381 26.506 Atomic orbital electron populations 1.21684 0.95056 1.01571 1.02089 1.22203 0.97136 0.97496 1.02875 1.22365 0.94205 0.93219 0.87302 0.86863 1.22240 0.95293 1.02073 0.98030 1.20927 0.93249 0.99752 0.95264 0.92077 1.21783 0.95894 1.02079 0.97038 1.21378 0.81961 0.80636 0.86814 1.90661 1.60760 1.48395 1.46393 1.46017 1.07051 1.53245 1.31021 1.21097 0.93149 0.94957 0.89954 1.21081 0.92679 1.00920 0.96388 1.21440 1.02567 0.93531 0.96465 1.20285 0.92104 0.89081 0.92683 1.42460 1.36326 1.03785 1.55231 1.19592 1.11044 0.85156 1.22046 0.91350 1.25503 0.98387 1.02201 1.00394 1.69800 1.20773 1.35844 1.35166 0.85190 0.77676 0.80533 0.76669 1.21360 1.21864 1.19877 1.23094 1.00418 1.01237 0.93903 1.22918 0.90600 1.02780 1.03911 1.22261 0.96427 1.01010 0.99036 1.22554 0.93303 0.97701 0.88207 1.87941 1.75064 1.53602 1.14294 0.91821 0.93325 0.92710 0.92498 0.90030 0.89178 0.89995 0.86677 0.86343 0.74875 0.91604 0.94484 0.92364 0.88635 0.97143 0.96395 0.79083 0.93956 0.89021 0.86385 0.87171 0.90766 0.91123 0.91289 0.88622 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.81 71.98 0.71 -1.31 16 2 C -0.16 -2.30 4.74 30.59 0.15 -2.15 16 3 C 0.09 1.21 3.29 30.62 0.10 1.31 16 4 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.14 -1.65 4.93 30.68 0.15 -1.50 16 6 C -0.07 -1.20 1.61 -10.67 -0.02 -1.22 16 7 H 0.06 1.28 6.56 -2.39 -0.02 1.26 16 8 C -0.13 -1.81 5.18 29.85 0.15 -1.66 16 9 C 0.50 11.60 7.57 87.66 0.66 12.26 16 10 O -0.58 -18.57 13.98 -3.03 -0.04 -18.62 16 11 N -0.72 -15.16 5.56 -463.04 -2.57 -17.73 16 12 C 0.13 3.55 5.44 86.38 0.47 4.02 16 13 C -0.07 -1.91 5.21 30.59 0.16 -1.75 16 14 C -0.14 -4.30 1.53 -52.18 -0.08 -4.38 16 15 C 0.18 7.66 6.12 86.38 0.53 8.19 16 16 N -0.74 -37.85 5.56 -343.45 -1.91 -39.76 16 17 C -0.25 -14.10 9.99 84.03 0.84 -13.27 16 18 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 20 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 21 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 C -0.15 -3.66 9.90 30.59 0.30 -3.36 16 26 C -0.16 -4.72 9.82 30.59 0.30 -4.42 16 27 C -0.15 -2.79 5.12 30.68 0.16 -2.63 16 28 C 0.06 1.07 6.52 72.01 0.47 1.54 16 29 O -0.39 -7.21 10.13 -148.98 -1.51 -8.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.76 7.82 -2.38 -0.02 0.75 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.41 6.00 8.47 -92.71 -0.79 5.22 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.04 1.26 6.96 -2.39 -0.02 1.25 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.87 8.09 -2.39 -0.02 1.85 16 44 H 0.01 0.45 7.94 -2.38 -0.02 0.44 16 45 H 0.02 0.78 6.72 -2.39 -0.02 0.76 16 46 H 0.38 20.34 7.60 -92.71 -0.70 19.63 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 49 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 51 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 52 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.07 1.65 6.03 -2.39 -0.01 1.64 16 54 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 55 H 0.05 0.90 6.23 -2.39 -0.01 0.89 16 Total: -1.00 -72.12 425.19 1.17 -70.95 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.62 Total: 37.80 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 5.52 Total: -14.06 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.20 Total: -116.23 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.55 Total: -27.33 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.12 1.17 -70.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167659144.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.635 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds