Wall clock time and date at job start Tue Mar 31 2020 22:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47337 * 2 1 4 4 H 1.09000 * 109.46880 * 307.94753 * 3 2 1 5 5 C 1.52995 * 109.47244 * 187.93974 * 3 2 1 6 6 C 1.52998 * 109.47224 * 65.00130 * 5 3 2 7 7 C 1.53001 * 109.46929 * 64.99884 * 6 5 3 8 8 C 1.53002 * 109.47116 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46741 * 299.99435 * 8 7 6 10 10 C 1.53001 * 109.46854 * 60.00404 * 9 8 7 11 11 C 1.52995 * 109.47545 * 184.99594 * 6 5 3 12 12 C 1.50704 * 109.46810 * 67.93981 * 3 2 1 13 13 O 1.21276 * 120.00170 * 30.50683 * 12 3 2 14 14 N 1.34782 * 119.99871 * 210.49963 * 12 3 2 15 15 C 1.46506 * 119.99957 * 184.79049 * 14 12 3 16 16 H 1.09000 * 110.63726 * 36.69703 * 15 14 12 17 17 C 1.54321 * 110.72157 * 273.54984 * 15 14 12 18 18 N 1.47019 * 107.27040 * 219.44303 * 17 15 14 19 19 C 1.36932 * 125.64805 * 178.90584 * 18 17 15 20 20 H 1.08001 * 120.00120 * 335.49722 * 19 18 17 21 21 C 1.38819 * 120.00310 * 155.50025 * 19 18 17 22 22 N 1.31616 * 120.00034 * 161.38210 * 21 19 18 23 23 Si 1.86794 * 119.99508 * 341.38090 * 21 19 18 24 24 H 1.48500 * 109.47226 * 85.34961 * 23 21 19 25 25 H 1.48501 * 109.46971 * 205.35036 * 23 21 19 26 26 H 1.48499 * 109.47616 * 325.35124 * 23 21 19 27 27 C 1.47421 * 108.70358 * 358.94428 * 18 17 15 28 28 C 1.54910 * 104.83415 * 24.12365 * 27 18 17 29 29 H 1.08997 * 111.00572 * 204.91399 * 28 27 18 30 30 O 1.42907 * 111.00231 * 81.06779 * 28 27 18 31 31 H 1.08999 * 109.46812 * 304.09243 * 1 2 3 32 32 H 1.08993 * 109.47131 * 64.09773 * 1 2 3 33 33 H 1.08996 * 109.47235 * 184.09566 * 1 2 3 34 34 H 1.09000 * 109.46990 * 239.99996 * 2 1 3 35 35 H 1.09003 * 109.46946 * 119.99849 * 2 1 3 36 36 H 1.08998 * 109.47032 * 304.99894 * 5 3 2 37 37 H 1.09006 * 109.46758 * 185.00273 * 5 3 2 38 38 H 1.08997 * 109.46992 * 304.99968 * 6 5 3 39 39 H 1.08997 * 109.47215 * 60.00221 * 7 6 5 40 40 H 1.09008 * 109.47106 * 299.99991 * 7 6 5 41 41 H 1.08997 * 109.47247 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47311 * 59.99774 * 8 7 6 43 43 H 1.08996 * 109.46873 * 179.97438 * 9 8 7 44 44 H 1.08997 * 109.47496 * 300.00227 * 9 8 7 45 45 H 1.09001 * 109.47584 * 59.99336 * 10 9 8 46 46 H 1.08994 * 109.47490 * 179.97438 * 10 9 8 47 47 H 1.09011 * 109.46856 * 60.00078 * 11 6 5 48 48 H 1.09006 * 109.47233 * 300.00434 * 11 6 5 49 49 H 0.97001 * 119.99822 * 4.79883 * 14 12 3 50 50 H 1.09000 * 109.88000 * 338.86445 * 17 15 14 51 51 H 1.09006 * 109.87896 * 100.02425 * 17 15 14 52 52 H 0.97000 * 119.99320 * 180.02562 * 22 21 19 53 53 H 1.09000 * 110.37289 * 142.96770 * 27 18 17 54 54 H 1.08997 * 110.36487 * 265.28832 * 27 18 17 55 55 H 0.96695 * 113.99996 * 67.80273 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5654 1.9956 -0.8104 5 6 3.5570 1.4470 -0.1992 6 6 3.8906 0.8998 -1.5885 7 6 3.3392 1.8475 -2.6558 8 6 3.6722 1.3000 -4.0451 9 6 5.1904 1.1873 -4.1984 10 6 5.7417 0.2396 -3.1312 11 6 5.4087 0.7875 -1.7415 12 6 1.7044 2.0939 1.3169 13 8 1.6440 1.4247 2.3265 14 7 1.4714 3.4203 1.3725 15 6 1.2488 4.0712 2.6660 16 1 1.8805 3.6254 3.4343 17 6 -0.2389 3.9919 3.0684 18 7 -0.5942 5.2794 3.6827 19 6 -1.8322 5.6230 4.1564 20 1 -2.7137 5.1349 3.7676 21 6 -1.9543 6.5988 5.1362 22 7 -3.1127 7.1913 5.3341 23 14 -0.4744 7.0708 6.1736 24 1 0.3230 8.1000 5.4593 25 1 -0.9361 7.6174 7.4748 26 1 0.3667 5.8703 6.4115 27 6 0.6028 6.1396 3.7035 28 6 1.4997 5.5988 2.5621 29 1 2.5481 5.8359 2.7433 30 8 1.0746 6.1027 1.2942 31 1 -0.3633 0.5760 0.8510 32 1 -0.3633 0.4489 -0.9244 33 1 -0.3633 -1.0250 0.0734 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.0250 0.8206 0.5600 37 1 3.9319 2.4667 -0.1107 38 1 3.4394 -0.0850 -1.7091 39 1 3.7904 2.8323 -2.5352 40 1 2.2576 1.9275 -2.5468 41 1 3.2791 1.9748 -4.8054 42 1 3.2208 0.3152 -4.1654 43 1 5.4277 0.7968 -5.1880 44 1 5.6419 2.1720 -4.0781 45 1 5.2903 -0.7452 -3.2514 46 1 6.8232 0.1589 -3.2405 47 1 5.8015 0.1123 -0.9811 48 1 5.8599 1.7724 -1.6210 49 1 1.4511 3.9438 0.5562 50 1 -0.8533 3.8207 2.1845 51 1 -0.3861 3.1852 3.7866 52 1 -3.1978 7.8734 6.0185 53 1 0.3282 7.1768 3.5112 54 1 1.1152 6.0535 4.6617 55 1 1.2114 7.0534 1.1828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220470441.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:31 Heat of formation + Delta-G solvation = -121.083746 kcal Electronic energy + Delta-G solvation = -31131.983304 eV Core-core repulsion = 27166.915033 eV Total energy + Delta-G solvation = -3965.068271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.40371 -40.06056 -39.28730 -36.52185 -36.20137 -35.43629 -33.94348 -32.83916 -31.53316 -30.87885 -29.69730 -28.96243 -26.36779 -25.18262 -23.66091 -23.40423 -22.82843 -22.07811 -21.39136 -20.79053 -20.26566 -19.28648 -18.39415 -18.15301 -17.46147 -16.86019 -16.34854 -16.19386 -15.79239 -15.66739 -15.44654 -15.33092 -14.96399 -14.81787 -14.72036 -14.58471 -14.41721 -14.31508 -14.07952 -13.76387 -13.33632 -13.26963 -13.10685 -12.92271 -12.84238 -12.74799 -12.71796 -12.50316 -12.22730 -12.17553 -12.06993 -11.96303 -11.89543 -11.68566 -11.61579 -11.44220 -11.21934 -11.08707 -10.91537 -10.77213 -10.71781 -10.57117 -10.08530 -9.03989 -8.22799 -5.56276 1.25022 1.37683 1.46691 1.65856 2.12476 2.36639 2.98904 3.12079 3.27944 3.62231 3.62305 3.71311 3.78708 3.88928 3.96621 4.02676 4.11370 4.13766 4.24130 4.33885 4.36075 4.45237 4.52383 4.56260 4.64030 4.65569 4.70147 4.70859 4.74676 4.76183 4.76802 4.84118 4.87682 4.94366 4.96895 5.00231 5.12555 5.15814 5.17871 5.26555 5.33114 5.35993 5.36712 5.42061 5.43642 5.48505 5.49974 5.58885 5.65486 5.71788 6.05102 6.63016 6.68978 6.87296 7.31726 7.45628 8.02437 8.97654 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002513 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.248274 B =11138.234700 C =11606.282944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.096 4.096 4 H 0.109 0.891 5 C -0.096 4.096 6 C -0.079 4.079 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.114 4.114 12 C 0.512 3.488 13 O -0.583 6.583 14 N -0.700 5.700 15 C 0.151 3.849 16 H 0.100 0.900 17 C 0.131 3.869 18 N -0.618 5.618 19 C -0.241 4.241 20 H 0.045 0.955 21 C -0.034 4.034 22 N -0.957 5.957 23 Si 0.956 3.044 24 H -0.256 1.256 25 H -0.306 1.306 26 H -0.270 1.270 27 C 0.072 3.928 28 C 0.108 3.892 29 H 0.115 0.885 30 O -0.559 6.559 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.418 0.582 50 H 0.024 0.976 51 H 0.012 0.988 52 H 0.265 0.735 53 H 0.059 0.941 54 H 0.036 0.964 55 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.014 -10.970 -21.212 32.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.117 4.117 4 H 0.127 0.873 5 C -0.134 4.134 6 C -0.097 4.097 7 C -0.155 4.155 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.156 4.156 11 C -0.152 4.152 12 C 0.300 3.700 13 O -0.462 6.462 14 N -0.352 5.352 15 C 0.044 3.956 16 H 0.118 0.882 17 C 0.005 3.995 18 N -0.345 5.345 19 C -0.370 4.370 20 H 0.063 0.937 21 C -0.229 4.229 22 N -0.603 5.603 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.234 1.234 26 H -0.195 1.195 27 C -0.053 4.053 28 C 0.047 3.953 29 H 0.132 0.868 30 O -0.368 6.368 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.256 0.744 50 H 0.042 0.958 51 H 0.030 0.970 52 H 0.074 0.926 53 H 0.078 0.922 54 H 0.053 0.947 55 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 21.666 -11.921 -20.498 32.120 hybrid contribution -0.365 1.155 1.060 1.610 sum 21.301 -10.765 -19.438 30.781 Atomic orbital electron populations 1.21802 0.96359 1.01937 1.01095 1.21479 0.95423 0.94298 1.03112 1.21441 0.99116 0.97768 0.93344 0.87280 1.21507 0.91534 1.02249 0.98077 1.21157 0.96030 0.99763 0.92797 1.21669 1.00919 0.98791 0.94146 1.21528 0.96038 1.01291 0.96832 1.21542 0.95784 0.99727 0.98691 1.21525 1.00611 0.99008 0.94420 1.21577 0.95138 1.01300 0.97159 1.21427 0.74871 0.81642 0.92011 1.90679 1.53223 1.63635 1.38675 1.45785 1.71573 1.08447 1.09377 1.21822 0.94783 0.91706 0.87253 0.88206 1.21713 0.95043 0.87445 0.95336 1.44595 1.06808 1.11649 1.71414 1.18487 0.83065 1.19609 1.15862 0.93672 1.25846 0.99496 0.98614 0.98924 1.69941 1.26762 1.27820 1.35808 0.85793 0.79495 0.78411 0.78006 1.18100 1.23421 1.19542 1.22911 0.88644 0.96007 0.97778 1.23029 0.97289 0.91526 0.83448 0.86799 1.86282 1.87572 1.30174 1.32747 0.95803 0.91365 0.91907 0.88385 0.92632 0.92158 0.91035 0.90379 0.91872 0.91505 0.91893 0.91975 0.91890 0.92233 0.92000 0.91862 0.92161 0.92062 0.74383 0.95833 0.97020 0.92606 0.92235 0.94667 0.74877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.81 71.98 0.71 -2.63 16 2 C -0.11 -2.02 5.06 30.59 0.15 -1.86 16 3 C -0.10 -1.78 2.03 -11.54 -0.02 -1.81 16 4 H 0.11 1.66 6.33 -2.39 -0.02 1.65 16 5 C -0.10 -1.44 4.13 30.59 0.13 -1.31 16 6 C -0.08 -0.90 2.06 -10.80 -0.02 -0.93 16 7 C -0.12 -1.25 4.96 30.60 0.15 -1.10 16 8 C -0.12 -1.18 5.92 30.60 0.18 -1.00 16 9 C -0.12 -1.14 5.92 30.60 0.18 -0.96 16 10 C -0.12 -1.15 5.92 30.61 0.18 -0.97 16 11 C -0.11 -1.25 5.21 30.61 0.16 -1.09 16 12 C 0.51 14.24 5.99 87.66 0.53 14.76 16 13 O -0.58 -21.42 15.61 -3.02 -0.05 -21.46 16 14 N -0.70 -18.87 5.08 -436.91 -2.22 -21.09 16 15 C 0.15 5.00 3.09 46.18 0.14 5.14 16 16 H 0.10 3.38 7.77 -2.39 -0.02 3.36 16 17 C 0.13 5.79 6.99 86.73 0.61 6.39 16 18 N -0.62 -30.87 3.14 -692.00 -2.17 -33.04 16 19 C -0.24 -14.59 10.57 84.04 0.89 -13.70 16 20 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 21 C -0.03 -2.05 5.46 84.86 0.46 -1.58 16 22 N -0.96 -61.41 13.97 21.65 0.30 -61.11 16 23 Si 0.96 46.70 24.31 68.60 1.67 48.37 16 24 H -0.26 -11.16 6.73 99.48 0.67 -10.49 16 25 H -0.31 -15.12 7.11 99.48 0.71 -14.42 16 26 H -0.27 -12.89 6.58 99.48 0.66 -12.23 16 27 C 0.07 2.85 4.47 86.86 0.39 3.24 16 28 C 0.11 3.08 4.28 31.98 0.14 3.22 16 29 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 30 O -0.56 -14.36 12.23 -148.98 -1.82 -16.18 16 31 H 0.02 0.67 7.23 -2.39 -0.02 0.65 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.34 6.14 -2.39 -0.01 1.32 16 35 H 0.05 1.30 7.56 -2.39 -0.02 1.29 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.03 8.14 -2.38 -0.02 1.02 16 38 H 0.08 0.88 6.20 -2.39 -0.01 0.87 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.71 6.46 -2.38 -0.02 0.69 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.42 9.46 7.57 -92.71 -0.70 8.76 16 50 H 0.02 1.09 8.03 -2.39 -0.02 1.07 16 51 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 52 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 53 H 0.06 2.44 7.11 -2.39 -0.02 2.42 16 54 H 0.04 1.43 5.32 -2.39 -0.01 1.42 16 55 H 0.40 6.99 9.12 -74.06 -0.68 6.32 16 Total: -1.00 -77.11 409.97 0.06 -77.05 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.59 Total: 23.64 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 4.95 Total: 3.83 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -4.09 Total: -115.24 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.87 Total: -37.64 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.67 Total: 48.37 kcal Total: -77.11 0.06 -77.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220470441.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.035 kcal (2) G-P(sol) polarization free energy of solvation -77.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds