Wall clock time and date at job start Tue Mar 31 2020 23:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47035 * 2 1 4 4 C 1.42899 * 113.99576 * 184.63166 * 3 2 1 5 5 H 1.08996 * 109.47410 * 328.05582 * 4 3 2 6 6 C 1.53006 * 109.46799 * 208.05831 * 4 3 2 7 7 C 1.53001 * 109.46769 * 66.00133 * 6 4 3 8 8 C 1.50692 * 109.47034 * 88.06334 * 4 3 2 9 9 O 1.21282 * 120.00642 * 4.99606 * 8 4 3 10 10 N 1.34783 * 119.99754 * 184.99713 * 8 4 3 11 11 C 1.46924 * 120.62770 * 179.97438 * 10 8 4 12 12 C 1.53194 * 108.77648 * 233.58415 * 11 10 8 13 13 C 1.53037 * 109.31140 * 305.36926 * 12 11 10 14 14 C 1.53005 * 109.45596 * 181.38434 * 13 12 11 15 15 H 1.09003 * 109.99574 * 178.85955 * 14 13 12 16 16 C 1.54316 * 109.77731 * 300.01071 * 14 13 12 17 17 C 1.55151 * 102.86568 * 141.88513 * 16 14 13 18 18 C 1.54912 * 101.58279 * 324.30894 * 17 16 14 19 19 N 1.47017 * 109.88652 * 57.76290 * 14 13 12 20 20 C 1.36940 * 125.64467 * 61.67392 * 19 14 13 21 21 H 1.08001 * 120.00240 * 14.48009 * 20 19 14 22 22 C 1.38812 * 120.00031 * 194.47509 * 20 19 14 23 23 N 1.31629 * 119.99790 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00347 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46876 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47214 * 120.00194 * 24 22 20 27 27 H 1.48498 * 109.46839 * 240.00334 * 24 22 20 28 28 C 1.53035 * 109.53930 * 61.36453 * 13 12 11 29 29 C 1.46924 * 120.63321 * 359.97438 * 10 8 4 30 30 H 1.09002 * 109.46817 * 299.99527 * 1 2 3 31 31 H 1.09000 * 109.47385 * 59.98953 * 1 2 3 32 32 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46817 * 240.00473 * 2 1 3 34 34 H 1.08993 * 109.47496 * 120.00646 * 2 1 3 35 35 H 1.09002 * 109.46866 * 185.99658 * 6 4 3 36 36 H 1.08993 * 109.47254 * 306.00281 * 6 4 3 37 37 H 1.09001 * 109.47379 * 303.36290 * 7 6 4 38 38 H 1.09001 * 109.47210 * 63.36556 * 7 6 4 39 39 H 1.09001 * 109.47113 * 183.36191 * 7 6 4 40 40 H 1.09007 * 109.58792 * 113.80085 * 11 10 8 41 41 H 1.08997 * 109.58935 * 353.37439 * 11 10 8 42 42 H 1.09004 * 109.49926 * 185.41282 * 12 11 10 43 43 H 1.08998 * 109.49480 * 65.32246 * 12 11 10 44 44 H 1.08994 * 109.46085 * 301.35193 * 13 12 11 45 45 H 1.09004 * 110.91967 * 23.47402 * 16 14 13 46 46 H 1.08999 * 110.59301 * 260.15002 * 16 14 13 47 47 H 1.08998 * 111.00787 * 206.23127 * 17 16 14 48 48 H 1.09006 * 111.03306 * 82.39473 * 17 16 14 49 49 H 1.08991 * 110.36426 * 278.17041 * 18 17 16 50 50 H 1.08999 * 110.45765 * 155.88997 * 18 17 16 51 51 H 0.97000 * 119.99813 * 179.97438 * 23 22 20 52 52 H 1.08999 * 109.49817 * 58.58587 * 28 13 12 53 53 H 1.09008 * 109.49800 * 178.68431 * 28 13 12 54 54 H 1.09001 * 109.58547 * 246.20332 * 29 10 8 55 55 H 1.08998 * 109.58187 * 6.62322 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4268 1.4615 -0.1054 5 1 3.8971 0.6070 0.3811 6 6 3.8866 2.7525 0.5751 7 6 3.6202 2.6590 2.0788 8 6 3.8218 1.4920 -1.5593 9 8 2.9672 1.5143 -2.4196 10 7 5.1248 1.4945 -1.9038 11 6 5.5255 1.5235 -3.3170 12 6 6.4839 0.3582 -3.5819 13 6 7.6520 0.4295 -2.5958 14 6 8.6292 -0.7131 -2.8798 15 1 9.4754 -0.6588 -2.1949 16 6 7.9084 -2.0683 -2.7208 17 6 8.5165 -2.9196 -3.8666 18 6 8.6990 -1.8578 -4.9798 19 7 9.1040 -0.6315 -4.2688 20 6 9.8105 0.4089 -4.8108 21 1 10.2645 1.1471 -4.1664 22 6 9.9433 0.5145 -6.1885 23 7 9.3896 -0.3850 -6.9739 24 14 10.9076 1.9333 -6.9279 25 1 11.4253 2.8004 -5.8392 26 1 12.0449 1.3994 -7.7195 27 1 10.0185 2.7281 -7.8127 28 6 7.1227 0.3040 -1.1654 29 6 6.1716 1.4683 -0.8731 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 4.9536 2.8936 0.4032 36 1 3.3368 3.5974 0.1606 37 1 2.5624 2.4582 2.2487 38 1 4.2162 1.8514 2.5039 39 1 3.8922 3.6009 2.5553 40 1 6.0274 2.4662 -3.5353 41 1 4.6433 1.4220 -3.9491 42 1 6.8638 0.4241 -4.6014 43 1 5.9542 -0.5854 -3.4509 44 1 8.1661 1.3837 -2.7102 45 1 6.8324 -1.9549 -2.8540 46 1 8.1334 -2.5108 -1.7504 47 1 7.8253 -3.7013 -4.1818 48 1 9.4757 -3.3449 -3.5713 49 1 7.7595 -1.6971 -5.5083 50 1 9.4777 -2.1668 -5.6770 51 1 9.4821 -0.3109 -7.9367 52 1 6.5871 -0.6391 -1.0571 53 1 7.9574 0.3314 -0.4648 54 1 6.7263 2.4064 -0.8917 55 1 5.7157 1.3303 0.1072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230522421.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:54 Heat of formation + Delta-G solvation = -84.074601 kcal Electronic energy + Delta-G solvation = -31958.736402 eV Core-core repulsion = 27995.272968 eV Total energy + Delta-G solvation = -3963.463434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.67116 -40.12700 -38.73418 -37.63167 -35.26484 -34.56737 -33.54685 -32.07870 -31.74374 -31.19794 -29.35273 -27.97151 -26.51321 -25.24422 -24.21988 -23.73942 -23.06050 -22.32107 -21.75680 -20.81648 -19.66916 -18.75975 -18.32422 -17.95063 -16.97075 -16.80777 -16.49707 -16.36600 -15.83070 -15.71664 -15.47830 -15.34491 -15.12817 -14.84834 -14.43248 -14.37564 -13.97873 -13.85937 -13.54971 -13.39554 -13.33034 -13.26375 -13.09052 -12.93760 -12.85415 -12.80163 -12.77643 -12.60439 -12.26895 -12.15088 -11.98286 -11.93129 -11.82926 -11.74315 -11.68975 -11.48925 -11.42314 -11.19471 -11.11257 -10.91424 -10.61990 -10.23212 -9.67867 -8.70670 -7.81310 -5.15492 1.44693 1.46055 1.50660 1.54932 1.87941 2.51780 2.66802 3.37165 3.39829 3.66443 3.82913 3.86506 3.91236 3.94944 4.05533 4.15862 4.20358 4.23988 4.27591 4.31072 4.33329 4.37263 4.39302 4.46206 4.52232 4.56082 4.68873 4.75314 4.79783 4.81909 4.88139 4.89532 4.91532 5.02029 5.06642 5.10164 5.12974 5.17019 5.19810 5.23097 5.25064 5.27054 5.29290 5.47303 5.54847 5.57230 5.66999 5.70214 5.73456 5.82903 6.06469 6.30819 6.42545 7.11172 7.16693 7.87073 8.54885 9.30325 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002984 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.462374 B = 9379.710415 C = 9755.933246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.375 6.375 4 C 0.082 3.918 5 H 0.114 0.886 6 C -0.121 4.121 7 C -0.144 4.144 8 C 0.481 3.519 9 O -0.584 6.584 10 N -0.600 5.600 11 C 0.118 3.882 12 C -0.100 4.100 13 C -0.084 4.084 14 C 0.158 3.842 15 H 0.038 0.962 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.180 3.820 19 N -0.609 5.609 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.064 4.064 23 N -0.948 5.948 24 Si 0.963 3.037 25 H -0.264 1.264 26 H -0.297 1.297 27 H -0.299 1.299 28 C -0.121 4.121 29 C 0.098 3.902 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.063 0.937 49 H -0.011 1.011 50 H 0.026 0.974 51 H 0.242 0.758 52 H 0.073 0.927 53 H 0.100 0.900 54 H 0.083 0.917 55 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 0.439 22.914 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 O -0.293 6.293 4 C 0.021 3.979 5 H 0.131 0.869 6 C -0.159 4.159 7 C -0.201 4.201 8 C 0.270 3.730 9 O -0.464 6.464 10 N -0.334 5.334 11 C -0.005 4.005 12 C -0.139 4.139 13 C -0.105 4.105 14 C 0.052 3.948 15 H 0.056 0.944 16 C -0.152 4.152 17 C -0.178 4.178 18 C 0.054 3.946 19 N -0.333 5.333 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.257 4.257 23 N -0.598 5.598 24 Si 0.793 3.207 25 H -0.188 1.188 26 H -0.224 1.224 27 H -0.227 1.227 28 C -0.160 4.160 29 C -0.023 4.023 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.007 0.993 50 H 0.045 0.955 51 H 0.052 0.948 52 H 0.091 0.909 53 H 0.118 0.882 54 H 0.101 0.899 55 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.954 0.688 22.309 24.863 hybrid contribution 0.696 0.539 -2.056 2.236 sum -10.259 1.227 20.253 22.736 Atomic orbital electron populations 1.21724 0.92752 1.03337 1.02545 1.22725 0.96748 0.82880 1.00315 1.87966 1.19811 1.28052 1.93466 1.22210 0.83515 1.02670 0.89545 0.86865 1.21811 1.02573 0.94024 0.97469 1.21703 1.02357 1.03258 0.92756 1.22209 0.81927 0.75443 0.93398 1.90667 1.50807 1.51659 1.53291 1.48295 1.05846 1.71825 1.07385 1.21426 0.97888 0.98835 0.82310 1.21608 0.95626 0.96769 0.99849 1.21419 0.95057 0.99368 0.94614 1.21205 0.93733 0.94041 0.85851 0.94440 1.22624 0.99365 0.94391 0.98772 1.22886 1.00494 0.97455 0.96960 1.21127 0.95774 0.85310 0.92364 1.44709 1.63085 1.17747 1.07785 1.19260 1.23425 1.02254 0.89828 0.90495 1.25573 1.02454 1.00823 0.96870 1.70159 1.50224 1.36916 1.02487 0.85215 0.77519 0.79543 0.78380 1.18800 1.22432 1.22675 1.21967 0.99593 0.98704 0.95720 1.22262 0.88841 1.00027 0.91154 0.91000 0.93711 0.89162 0.95153 0.90506 0.87831 0.92292 0.92790 0.90741 0.91109 0.91836 0.92024 0.93725 0.92874 0.93118 0.91426 0.88906 0.90840 0.91790 0.99270 0.95538 0.94841 0.90855 0.88162 0.89862 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.96 6.42 71.98 0.46 1.42 16 3 O -0.37 -8.89 9.06 -129.99 -1.18 -10.07 16 4 C 0.08 1.63 1.67 29.85 0.05 1.68 16 5 H 0.11 1.57 7.14 -2.39 -0.02 1.56 16 6 C -0.12 -1.82 5.17 30.60 0.16 -1.67 16 7 C -0.14 -1.50 9.85 71.98 0.71 -0.79 16 8 C 0.48 13.81 6.98 87.65 0.61 14.42 16 9 O -0.58 -22.76 15.91 15.95 0.25 -22.51 16 10 N -0.60 -15.71 2.97 -818.99 -2.43 -18.14 16 11 C 0.12 3.93 6.43 86.36 0.56 4.49 16 12 C -0.10 -3.62 4.93 30.67 0.15 -3.47 16 13 C -0.08 -2.64 1.91 -10.77 -0.02 -2.66 16 14 C 0.16 5.68 2.96 45.34 0.13 5.81 16 15 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 16 C -0.11 -3.45 5.19 31.78 0.17 -3.28 16 17 C -0.14 -4.97 7.08 31.99 0.23 -4.74 16 18 C 0.18 8.72 5.41 86.86 0.47 9.19 16 19 N -0.61 -29.25 2.27 -668.28 -1.52 -30.76 16 20 C -0.22 -11.65 9.85 84.03 0.83 -10.83 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 23 N -0.95 -57.08 10.58 21.65 0.23 -56.85 16 24 Si 0.96 45.77 29.55 68.60 2.03 47.80 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 C -0.12 -2.45 5.09 30.66 0.16 -2.29 16 29 C 0.10 1.73 4.88 86.35 0.42 2.15 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 0.71 8.06 -2.39 -0.02 0.69 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.21 5.44 -2.39 -0.01 1.20 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 0.69 7.77 -2.39 -0.02 0.67 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 41 H 0.06 2.33 7.00 -2.39 -0.02 2.31 16 42 H 0.04 2.08 7.52 -2.38 -0.02 2.06 16 43 H 0.05 1.91 6.13 -2.39 -0.01 1.90 16 44 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 45 H 0.07 2.05 5.51 -2.38 -0.01 2.03 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 49 H -0.01 -0.58 8.06 -2.39 -0.02 -0.60 16 50 H 0.03 1.47 6.93 -2.39 -0.02 1.46 16 51 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 52 H 0.07 1.41 7.10 -2.39 -0.02 1.40 16 53 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 54 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 55 H 0.12 1.26 4.76 -2.39 -0.01 1.25 16 Total: -1.00 -74.37 410.82 4.51 -69.86 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.84 Total: 16.08 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.28 Total: 4.59 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.72 Total: -105.76 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.92 Total: -32.58 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.37 4.51 -69.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230522421.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.212 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds