Wall clock time and date at job start Tue Mar 31 2020 23:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47051 * 2 1 4 4 H 1.09001 * 109.46744 * 304.43022 * 3 2 1 5 5 C 1.50694 * 109.47330 * 184.42932 * 3 2 1 6 6 H 1.08002 * 120.00107 * 245.36010 * 5 3 2 7 7 C 1.37882 * 120.00119 * 65.35126 * 5 3 2 8 8 N 1.31505 * 120.00123 * 192.58333 * 7 5 3 9 9 Si 1.86799 * 119.99551 * 12.58952 * 7 5 3 10 10 H 1.48500 * 109.47285 * 94.60315 * 9 7 5 11 11 H 1.48506 * 109.47219 * 214.59993 * 9 7 5 12 12 H 1.48503 * 109.47539 * 334.59735 * 9 7 5 13 13 N 1.46905 * 109.47002 * 64.42634 * 3 2 1 14 14 C 1.46894 * 110.99997 * 257.74852 * 13 3 2 15 15 C 1.53001 * 109.46999 * 185.00426 * 14 13 3 16 16 C 1.53045 * 109.45808 * 295.06870 * 15 14 13 17 17 C 1.53196 * 109.31285 * 178.61467 * 16 15 14 18 18 N 1.46926 * 108.77460 * 54.63151 * 17 16 15 19 19 C 1.34780 * 120.62554 * 126.36831 * 18 17 16 20 20 O 1.21283 * 119.99658 * 185.48410 * 19 18 17 21 21 C 1.50696 * 120.00188 * 5.49366 * 19 18 17 22 22 C 1.53182 * 109.54390 * 273.14665 * 21 19 18 23 23 C 1.53090 * 109.16425 * 183.15056 * 22 21 19 24 24 O 1.42911 * 109.41316 * 57.61091 * 23 22 21 25 25 C 1.42901 * 114.09706 * 298.83956 * 24 23 22 26 26 C 1.53090 * 109.41477 * 61.15764 * 25 24 23 27 27 C 1.46922 * 118.74214 * 306.39516 * 18 17 16 28 28 C 1.53042 * 109.46169 * 175.00331 * 15 14 13 29 29 H 1.08999 * 109.47570 * 296.52755 * 1 2 3 30 30 H 1.08996 * 109.47159 * 56.52779 * 1 2 3 31 31 H 1.08997 * 109.46650 * 176.52653 * 1 2 3 32 32 H 1.08995 * 109.47281 * 240.00241 * 2 1 3 33 33 H 1.09005 * 109.47287 * 119.99595 * 2 1 3 34 34 H 0.97010 * 119.99932 * 180.02562 * 8 7 5 35 35 H 1.00905 * 110.99773 * 21.70663 * 13 3 2 36 36 H 1.08998 * 109.47366 * 305.00243 * 14 13 3 37 37 H 1.08999 * 109.47285 * 65.00776 * 14 13 3 38 38 H 1.08999 * 109.46509 * 55.02500 * 15 14 13 39 39 H 1.08996 * 109.50318 * 298.56544 * 16 15 14 40 40 H 1.09004 * 109.49917 * 58.66639 * 16 15 14 41 41 H 1.09005 * 109.58775 * 294.85022 * 17 16 15 42 42 H 1.08998 * 109.70536 * 174.49586 * 17 16 15 43 43 H 1.09004 * 109.54299 * 33.41499 * 21 19 18 44 44 H 1.09003 * 109.52055 * 303.06102 * 22 21 19 45 45 H 1.09006 * 109.52014 * 63.24343 * 22 21 19 46 46 H 1.08999 * 109.48273 * 297.62743 * 23 22 21 47 47 H 1.08997 * 109.47764 * 177.58665 * 23 22 21 48 48 H 1.09004 * 109.48029 * 301.17707 * 25 24 23 49 49 H 1.08993 * 109.48345 * 181.14218 * 25 24 23 50 50 H 1.08998 * 109.52327 * 182.48766 * 26 25 24 51 51 H 1.09002 * 109.52367 * 62.30105 * 26 25 24 52 52 H 1.08999 * 109.59000 * 293.81928 * 27 18 17 53 53 H 1.09000 * 109.70432 * 173.46033 * 27 18 17 54 54 H 1.09003 * 109.49482 * 301.33612 * 28 15 14 55 55 H 1.09002 * 109.49943 * 61.39810 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6133 1.9788 -0.8477 5 6 3.5430 1.4441 -0.1097 6 1 4.1438 1.8125 0.7086 7 6 4.1511 0.9749 -1.2548 8 7 5.4454 0.7427 -1.2640 9 14 3.1363 0.6692 -2.7930 10 1 3.1924 1.8669 -3.6692 11 1 3.6832 -0.5034 -3.5220 12 1 1.7266 0.4009 -2.4109 13 7 1.6395 2.1035 1.2494 14 6 0.4872 2.9880 1.0311 15 6 0.1783 3.7508 2.3209 16 6 -0.2660 2.7639 3.4029 17 6 -0.5411 3.5270 4.7025 18 7 -1.5099 4.5966 4.4268 19 6 -2.6403 4.7032 5.1530 20 8 -3.4783 5.5270 4.8530 21 6 -2.8628 3.7988 6.3377 22 6 -3.5101 2.4916 5.8701 23 6 -3.8042 1.6125 7.0885 24 8 -4.6502 2.3238 7.9943 25 6 -4.0778 3.5309 8.5015 26 6 -3.7946 4.4871 7.3399 27 6 -1.2232 5.5476 3.3441 28 6 -0.9405 4.7619 2.0598 29 1 -0.3634 0.4590 0.9194 30 1 -0.3633 0.5668 -0.8572 31 1 -0.3632 -1.0258 -0.0623 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8734 0.4129 -2.0697 35 1 1.4435 1.4254 1.9704 36 1 0.7188 3.6970 0.2362 37 1 -0.3794 2.3919 0.7451 38 1 1.0726 4.2770 2.6547 39 1 -1.1744 2.2552 3.0805 40 1 0.5221 2.0301 3.5718 41 1 0.3868 3.9614 5.0746 42 1 -0.9508 2.8462 5.4487 43 1 -1.9076 3.5834 6.8165 44 1 -4.4406 2.7126 5.3472 45 1 -2.8294 1.9679 5.1988 46 1 -2.8691 1.3585 7.5877 47 1 -4.3038 0.6992 6.7655 48 1 -3.1463 3.3020 9.0192 49 1 -4.7744 3.9996 9.1965 50 1 -3.3175 5.3905 7.7198 51 1 -4.7309 4.7484 6.8467 52 1 -0.3510 6.1468 3.6054 53 1 -2.0826 6.2005 3.1913 54 1 -0.6325 5.4501 1.2726 55 1 -1.8425 4.2344 1.7494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160606.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:29 Heat of formation + Delta-G solvation = -118.108534 kcal Electronic energy + Delta-G solvation = -30980.117574 eV Core-core repulsion = 27015.178318 eV Total energy + Delta-G solvation = -3964.939256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.70052 -39.96542 -39.10978 -37.88639 -35.27068 -34.73921 -33.97188 -32.31307 -31.99048 -31.77469 -29.52117 -27.75942 -26.36348 -24.59958 -24.41910 -24.32039 -23.30210 -21.85137 -21.68063 -21.02305 -19.79472 -18.82061 -18.32210 -17.45328 -17.02015 -16.86127 -16.65576 -16.48312 -16.15454 -15.79377 -15.68559 -15.38432 -15.07601 -14.93880 -14.76589 -14.63175 -14.39505 -14.32114 -14.09295 -13.83713 -13.56646 -13.34915 -13.23740 -13.14407 -12.81121 -12.70441 -12.55344 -12.51697 -12.34239 -12.26731 -12.18557 -11.82285 -11.72158 -11.68502 -11.53986 -11.39391 -11.29130 -11.25336 -11.10843 -10.89364 -10.54557 -10.39393 -9.67241 -8.87395 -8.24112 -6.21112 1.33100 1.37889 1.45764 1.52678 1.96034 2.37265 2.98011 3.09789 3.38602 3.49745 3.66549 3.73752 3.77125 3.92142 4.00755 4.04264 4.13604 4.18051 4.29137 4.30076 4.34547 4.39594 4.43612 4.49098 4.50428 4.56519 4.58687 4.63307 4.68342 4.74517 4.77751 4.80689 4.83181 4.85127 4.92425 4.97956 5.02778 5.08080 5.11017 5.11450 5.13228 5.18871 5.21705 5.24318 5.28890 5.53913 5.54705 5.57203 5.77454 6.11398 6.27721 6.38174 6.76517 6.85845 6.92047 7.11072 7.42617 8.93329 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.002335 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.937215 B =11987.950030 C =12576.241030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.197 3.803 4 H 0.016 0.984 5 C -0.499 4.499 6 H 0.033 0.967 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.924 3.076 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.224 1.224 13 N -0.680 5.680 14 C 0.065 3.935 15 C -0.076 4.076 16 C -0.126 4.126 17 C 0.106 3.894 18 N -0.607 5.607 19 C 0.517 3.483 20 O -0.587 6.587 21 C -0.105 4.105 22 C -0.142 4.142 23 C 0.061 3.939 24 O -0.405 6.405 25 C 0.063 3.937 26 C -0.137 4.137 27 C 0.113 3.887 28 C -0.119 4.119 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.336 0.664 36 H 0.049 0.951 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.079 0.921 51 H 0.057 0.943 52 H 0.077 0.923 53 H 0.075 0.925 54 H 0.078 0.922 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.565 3.390 18.217 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C 0.088 3.912 4 H 0.034 0.966 5 C -0.537 4.537 6 H 0.052 0.948 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.749 3.251 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.147 1.147 13 N -0.312 5.312 14 C -0.064 4.064 15 C -0.095 4.095 16 C -0.164 4.164 17 C -0.016 4.016 18 N -0.338 5.338 19 C 0.306 3.694 20 O -0.468 6.468 21 C -0.126 4.126 22 C -0.180 4.180 23 C -0.015 4.015 24 O -0.325 6.325 25 C -0.014 4.014 26 C -0.175 4.175 27 C -0.010 4.010 28 C -0.158 4.158 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.127 0.873 43 H 0.138 0.862 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.125 0.875 48 H 0.091 0.909 49 H 0.123 0.877 50 H 0.098 0.902 51 H 0.076 0.924 52 H 0.096 0.904 53 H 0.094 0.906 54 H 0.097 0.903 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.575 4.206 17.943 26.885 hybrid contribution 0.001 -0.407 -1.630 1.680 sum -19.574 3.799 16.312 25.762 Atomic orbital electron populations 1.21850 0.95089 1.01816 1.01449 1.22471 0.95705 0.99484 1.01151 1.19344 0.93099 0.89911 0.88865 0.96567 1.21342 0.91837 1.39389 1.01166 0.94835 1.25755 0.95703 0.95159 1.02008 1.70102 1.12133 1.47520 1.29281 0.86239 0.81794 0.77416 0.79639 1.21017 1.21564 1.14681 1.60420 1.36786 1.24938 1.09034 1.22075 0.91496 0.95506 0.97365 1.21057 0.97821 0.95959 0.94683 1.21937 1.01913 0.98033 0.94506 1.21998 0.92719 0.88950 0.97918 1.48262 1.20824 1.30929 1.33835 1.21092 0.80328 0.83719 0.84238 1.90660 1.44719 1.39901 1.71482 1.21443 1.02129 0.95345 0.93728 1.22166 1.01396 0.94585 0.99820 1.22726 0.95909 0.94360 0.88513 1.87931 1.44672 1.37115 1.62737 1.22702 1.00093 0.84162 0.94418 1.22036 0.99621 0.99307 0.96526 1.21560 1.01538 0.91533 0.86353 1.21841 0.98457 0.98337 0.97185 0.91703 0.93798 0.91904 0.93847 0.92473 0.92899 0.84473 0.93248 0.94990 0.90910 0.91570 0.89640 0.90017 0.87259 0.86161 0.92550 0.88728 0.90665 0.87525 0.90942 0.87694 0.90199 0.92441 0.90430 0.90621 0.90342 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.87 71.98 0.64 -3.55 16 2 C -0.15 -5.68 4.49 30.60 0.14 -5.54 16 3 C 0.20 8.55 1.75 44.17 0.08 8.63 16 4 H 0.02 0.73 6.20 -2.39 -0.01 0.72 16 5 C -0.50 -27.79 9.29 25.60 0.24 -27.55 16 6 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 7 C 0.01 0.59 5.37 84.66 0.45 1.05 16 8 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 9 Si 0.92 43.00 25.75 68.60 1.77 44.77 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.22 -9.26 5.35 99.48 0.53 -8.73 16 13 N -0.68 -24.24 6.01 -495.45 -2.98 -27.22 16 14 C 0.06 1.86 4.58 86.30 0.40 2.26 16 15 C -0.08 -1.67 2.36 -10.76 -0.03 -1.69 16 16 C -0.13 -2.12 5.16 30.67 0.16 -1.96 16 17 C 0.11 1.42 6.05 86.36 0.52 1.94 16 18 N -0.61 -11.07 2.97 -818.91 -2.43 -13.50 16 19 C 0.52 10.90 6.79 87.66 0.60 11.50 16 20 O -0.59 -17.48 15.48 -3.04 -0.05 -17.53 16 21 C -0.11 -1.49 1.73 -11.42 -0.02 -1.51 16 22 C -0.14 -1.83 5.21 30.69 0.16 -1.67 16 23 C 0.06 0.66 6.84 72.01 0.49 1.16 16 24 O -0.41 -6.41 10.77 -148.98 -1.60 -8.01 16 25 C 0.06 0.73 6.84 72.01 0.49 1.22 16 26 C -0.14 -2.07 5.03 30.68 0.15 -1.91 16 27 C 0.11 2.23 6.44 86.36 0.56 2.79 16 28 C -0.12 -2.40 5.36 30.67 0.16 -2.24 16 29 H 0.06 1.62 6.30 -2.39 -0.02 1.61 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.80 4.80 -2.39 -0.01 1.79 16 33 H 0.06 2.16 8.05 -2.38 -0.02 2.14 16 34 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.34 10.60 6.30 -89.69 -0.57 10.03 16 36 H 0.05 1.58 7.97 -2.39 -0.02 1.57 16 37 H 0.03 0.86 6.09 -2.39 -0.01 0.84 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.46 6.74 -2.38 -0.02 1.45 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.11 0.92 4.85 -2.39 -0.01 0.91 16 43 H 0.12 1.07 6.68 -2.38 -0.02 1.05 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.09 0.95 7.23 -2.38 -0.02 0.94 16 46 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 1.19 7.76 -2.39 -0.02 1.17 16 52 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.08 1.74 7.01 -2.39 -0.02 1.73 16 54 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 55 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.13 403.00 0.32 -72.81 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.12 Total: 24.56 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 5.19 Total: -17.09 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -5.11 Total: -99.51 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.65 Total: -25.54 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.77 Total: 44.77 kcal Total: -73.13 0.32 -72.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160606.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.302 kcal (2) G-P(sol) polarization free energy of solvation -73.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds