Wall clock time and date at job start Tue Mar 31 2020 23:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47504 * 2 1 4 4 H 1.08998 * 109.46764 * 51.59310 * 3 2 1 5 5 C 1.50697 * 109.46918 * 291.59461 * 3 2 1 6 6 H 1.08001 * 120.00315 * 243.11332 * 5 3 2 7 7 C 1.37877 * 120.00108 * 63.11539 * 5 3 2 8 8 N 1.31508 * 120.00386 * 25.62342 * 7 5 3 9 9 Si 1.86804 * 119.99981 * 205.62164 * 7 5 3 10 10 H 1.48503 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47286 * 119.99932 * 9 7 5 12 12 H 1.48501 * 109.47535 * 240.00096 * 9 7 5 13 13 N 1.46895 * 109.47089 * 171.59037 * 3 2 1 14 14 C 1.48896 * 111.00017 * 54.65917 * 13 3 2 15 15 C 1.54804 * 103.92290 * 200.12000 * 14 13 3 16 16 H 1.08991 * 108.88293 * 267.79777 * 15 14 13 17 17 C 1.51286 * 109.64883 * 148.64163 * 15 14 13 18 18 O 1.41723 * 111.25895 * 206.71802 * 17 15 14 19 19 C 1.42720 * 110.98882 * 67.43448 * 18 17 15 20 20 C 1.51255 * 110.68611 * 294.67690 * 19 18 17 21 21 H 1.08998 * 108.01240 * 153.51481 * 20 19 18 22 22 C 1.53005 * 108.03867 * 269.98551 * 20 19 18 23 23 C 1.50703 * 109.47035 * 301.86894 * 22 20 19 24 24 O 1.21284 * 120.00064 * 0.02562 * 23 22 20 25 25 N 1.34778 * 120.00089 * 180.02562 * 23 22 20 26 26 C 1.46498 * 120.00066 * 180.02562 * 25 23 22 27 27 C 1.52993 * 109.47113 * 85.00093 * 26 25 23 28 28 C 1.53000 * 109.46917 * 205.00358 * 26 25 23 29 29 C 1.49623 * 116.52392 * 31.75724 * 20 19 18 30 30 H 1.08999 * 107.36246 * 234.95757 * 29 20 19 31 31 C 1.48902 * 111.00317 * 300.02165 * 13 3 2 32 32 H 1.09001 * 109.46865 * 65.67890 * 1 2 3 33 33 H 1.09000 * 109.47353 * 185.67606 * 1 2 3 34 34 H 1.09002 * 109.47081 * 305.68369 * 1 2 3 35 35 H 1.08995 * 109.46876 * 120.00346 * 2 1 3 36 36 H 1.09005 * 109.46669 * 239.99700 * 2 1 3 37 37 H 0.96997 * 120.00445 * 179.97438 * 8 7 5 38 38 H 1.09002 * 110.53259 * 318.72900 * 14 13 3 39 39 H 1.09002 * 110.53780 * 81.50997 * 14 13 3 40 40 H 1.09004 * 109.22740 * 327.90535 * 17 15 14 41 41 H 1.08998 * 109.23012 * 87.26569 * 17 15 14 42 42 H 1.08996 * 109.22957 * 174.36338 * 19 18 17 43 43 H 1.09001 * 109.23003 * 54.98833 * 19 18 17 44 44 H 1.09000 * 109.47285 * 61.87076 * 22 20 19 45 45 H 1.08997 * 109.46949 * 181.87171 * 22 20 19 46 46 H 0.96998 * 119.99773 * 0.02562 * 25 23 22 47 47 H 1.08997 * 109.46923 * 324.99875 * 26 25 23 48 48 H 1.08997 * 109.47279 * 180.02562 * 27 26 25 49 49 H 1.08999 * 109.47195 * 300.00191 * 27 26 25 50 50 H 1.08997 * 109.47404 * 60.00077 * 27 26 25 51 51 H 1.08995 * 109.47354 * 59.99663 * 28 26 25 52 52 H 1.08997 * 109.46811 * 180.02562 * 28 26 25 53 53 H 1.08997 * 109.46929 * 299.99513 * 28 26 25 54 54 H 1.08998 * 110.55230 * 278.60837 * 31 13 3 55 55 H 1.09004 * 110.55086 * 41.42795 * 31 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5593 1.9978 0.8053 5 6 1.7146 2.0903 -1.3211 6 1 2.5110 2.4226 -1.9704 7 6 0.3999 2.2590 -1.7008 8 7 -0.5427 2.3437 -0.7877 9 14 -0.0425 2.3672 -3.5125 10 1 1.1903 2.2443 -4.3313 11 1 -0.9785 1.2679 -3.8600 12 1 -0.6909 3.6747 -3.7866 13 7 3.4950 1.4473 0.2025 14 6 4.1771 0.5907 -0.8064 15 6 5.5537 0.2864 -0.1671 16 1 6.2710 1.0362 -0.5008 17 6 6.0289 -1.0802 -0.6089 18 8 6.9006 -1.6557 0.3490 19 6 6.2023 -1.9658 1.5544 20 6 5.7109 -0.7033 2.2271 21 1 4.8339 -0.9580 2.8222 22 6 6.8034 -0.2197 3.1829 23 6 7.1096 -1.3027 4.1851 24 8 6.5131 -2.3578 4.1391 25 7 8.0463 -1.0990 5.1325 26 6 8.3443 -2.1520 6.1064 27 6 9.3671 -3.1220 5.5117 28 6 8.9171 -1.5232 7.3782 29 6 5.3457 0.4347 1.3270 30 1 5.9221 1.3019 1.6489 31 6 3.8553 0.8131 1.5007 32 1 -0.3633 0.4233 -0.9365 33 1 -0.3634 -1.0226 0.1016 34 1 -0.3633 0.5995 0.8347 35 1 1.8933 -0.5139 0.8899 36 1 1.8933 -0.5139 -0.8900 37 1 -1.4675 2.4628 -1.0548 38 1 3.6176 -0.3310 -0.9663 39 1 4.3023 1.1309 -1.7448 40 1 5.1661 -1.7299 -0.7564 41 1 6.5707 -0.9851 -1.5499 42 1 6.8724 -2.4958 2.2312 43 1 5.3498 -2.6038 1.3215 44 1 7.7040 0.0159 2.6160 45 1 6.4595 0.6726 3.7060 46 1 8.5230 -0.2551 5.1696 47 1 7.4292 -2.6924 6.3487 48 1 9.5886 -3.9057 6.2361 49 1 8.9590 -3.5699 4.6057 50 1 10.2822 -2.5816 5.2694 51 1 8.1884 -0.8322 7.8018 52 1 9.1393 -2.3067 8.1026 53 1 9.8322 -0.9829 7.1359 54 1 3.7334 1.5219 2.3197 55 1 3.2516 -0.0783 1.6716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170044.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:00 Heat of formation + Delta-G solvation = -85.246549 kcal Electronic energy + Delta-G solvation = -31548.838915 eV Core-core repulsion = 27585.324662 eV Total energy + Delta-G solvation = -3963.514253 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -41.92123 -40.63355 -38.95245 -37.07646 -36.44586 -35.00878 -33.37251 -32.56917 -31.64046 -29.91706 -28.18942 -28.08395 -28.00287 -25.93923 -24.41663 -23.77274 -23.35235 -22.05417 -21.36734 -20.80070 -19.59143 -18.35789 -17.94813 -17.53391 -17.32821 -16.88880 -16.78971 -16.50845 -16.12807 -15.71645 -15.66089 -15.41892 -14.96852 -14.89769 -14.77174 -14.36000 -14.08243 -14.00286 -13.71409 -13.63807 -13.18861 -13.10089 -13.04845 -12.97702 -12.80070 -12.65407 -12.54347 -12.40951 -12.27196 -12.15991 -12.13566 -11.97170 -11.94114 -11.87397 -11.64887 -11.51184 -11.43047 -11.13881 -10.99720 -10.61340 -10.35298 -10.05260 -9.83443 -8.96922 -8.18198 -6.04846 1.38262 1.44490 1.54055 1.66821 2.25326 2.43888 3.01891 3.09249 3.41617 3.55935 3.59821 3.79630 3.91758 3.96775 4.05880 4.14084 4.17992 4.26432 4.34714 4.38754 4.44117 4.52332 4.55775 4.58350 4.65146 4.68210 4.74491 4.75508 4.77159 4.80718 4.81847 4.86507 4.92897 4.94452 5.02504 5.08999 5.12227 5.19125 5.25180 5.26470 5.29076 5.34174 5.36785 5.41844 5.43145 5.61068 5.67977 5.79416 5.96017 6.09775 6.19567 6.40195 6.60555 6.66644 6.94670 7.30970 7.49349 8.89434 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.002513 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.194908 B =11138.740816 C =11633.120557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.129 4.129 3 C 0.208 3.792 4 H 0.008 0.992 5 C -0.527 4.527 6 H 0.052 0.948 7 C 0.034 3.966 8 N -0.886 5.886 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.513 5.513 14 C 0.047 3.953 15 C -0.108 4.108 16 H 0.088 0.912 17 C 0.066 3.934 18 O -0.376 6.376 19 C 0.063 3.937 20 C -0.087 4.087 21 H 0.067 0.933 22 C -0.130 4.130 23 C 0.512 3.488 24 O -0.578 6.578 25 N -0.716 5.716 26 C 0.130 3.870 27 C -0.159 4.159 28 C -0.152 4.152 29 C -0.063 4.063 30 H 0.086 0.914 31 C 0.025 3.975 32 H 0.068 0.932 33 H 0.018 0.982 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.033 0.967 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.415 0.585 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.034 0.966 50 H 0.068 0.932 51 H 0.061 0.939 52 H 0.080 0.920 53 H 0.075 0.925 54 H 0.072 0.928 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.950 -7.253 12.725 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.169 4.169 3 C 0.100 3.900 4 H 0.026 0.974 5 C -0.565 4.565 6 H 0.070 0.930 7 C -0.167 4.167 8 N -0.524 5.524 9 Si 0.755 3.245 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.235 5.235 14 C -0.081 4.081 15 C -0.128 4.128 16 H 0.106 0.894 17 C -0.012 4.012 18 O -0.294 6.294 19 C -0.013 4.013 20 C -0.106 4.106 21 H 0.085 0.915 22 C -0.169 4.169 23 C 0.300 3.700 24 O -0.458 6.458 25 N -0.369 5.369 26 C 0.026 3.974 27 C -0.218 4.218 28 C -0.210 4.210 29 C -0.082 4.082 30 H 0.105 0.895 31 C -0.103 4.103 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.051 0.949 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.252 0.748 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.054 0.946 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.099 0.901 53 H 0.094 0.906 54 H 0.091 0.909 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.719 -7.391 12.694 25.398 hybrid contribution -1.509 -0.252 -0.829 1.739 sum 19.210 -7.644 11.865 23.838 Atomic orbital electron populations 1.21906 0.95715 0.96620 1.03602 1.22159 0.96896 0.99768 0.98045 1.19236 0.83444 0.91253 0.96059 0.97382 1.21087 0.91672 1.40601 1.03132 0.92954 1.25367 0.96508 0.94637 1.00145 1.70373 1.01350 1.46706 1.33965 0.85990 0.78250 0.77484 0.82807 1.19363 1.20418 1.21106 1.65928 1.10136 1.45713 1.01724 1.23216 0.93025 0.95557 0.96350 1.21537 0.97114 0.98862 0.95254 0.89398 1.22102 0.94261 0.92140 0.92647 1.87975 1.35317 1.80925 1.25173 1.22488 0.97314 0.95202 0.86314 1.20299 0.98672 0.95122 0.96525 0.91456 1.21955 1.01297 0.97764 0.95927 1.21049 0.78537 0.88563 0.81840 1.90661 1.52269 1.29351 1.73558 1.46106 1.40011 1.19560 1.31212 1.20998 0.98295 0.88993 0.89117 1.22144 0.99053 0.99604 1.00973 1.22020 1.01696 1.01885 0.95394 1.20424 0.95539 0.98204 0.94076 0.89521 1.23614 0.95447 0.97355 0.93913 0.91384 0.96267 0.94713 0.94610 0.93924 0.92833 0.94433 0.91613 0.94101 0.87484 0.87404 0.94877 0.86691 0.86580 0.74796 0.91876 0.90527 0.94644 0.91251 0.91951 0.90075 0.90564 0.90936 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.26 71.98 0.59 -5.22 16 2 C -0.13 -6.02 4.51 30.59 0.14 -5.88 16 3 C 0.21 10.39 2.06 44.17 0.09 10.48 16 4 H 0.01 0.47 8.02 -2.39 -0.02 0.45 16 5 C -0.53 -28.60 8.04 25.60 0.21 -28.39 16 6 H 0.05 2.90 7.32 -2.91 -0.02 2.88 16 7 C 0.03 1.85 3.58 84.66 0.30 2.16 16 8 N -0.89 -49.26 9.97 21.45 0.21 -49.05 16 9 Si 0.93 42.64 29.61 68.60 2.03 44.67 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.51 -21.67 5.42 -857.23 -4.65 -26.32 16 14 C 0.05 1.74 5.13 86.53 0.44 2.18 16 15 C -0.11 -3.14 3.20 -11.20 -0.04 -3.17 16 16 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 17 C 0.07 1.76 6.15 71.42 0.44 2.20 16 18 O -0.38 -10.35 10.89 -148.89 -1.62 -11.97 16 19 C 0.06 1.72 5.61 71.41 0.40 2.13 16 20 C -0.09 -2.16 2.03 -12.44 -0.03 -2.19 16 21 H 0.07 1.91 7.18 -2.39 -0.02 1.89 16 22 C -0.13 -2.30 4.69 29.85 0.14 -2.16 16 23 C 0.51 10.37 7.14 87.66 0.63 10.99 16 24 O -0.58 -16.47 13.43 -3.04 -0.04 -16.51 16 25 N -0.72 -9.69 5.08 -442.54 -2.25 -11.94 16 26 C 0.13 1.75 3.18 44.99 0.14 1.89 16 27 C -0.16 -2.10 9.48 71.98 0.68 -1.41 16 28 C -0.15 -1.11 9.38 71.98 0.68 -0.44 16 29 C -0.06 -1.75 2.65 -11.75 -0.03 -1.78 16 30 H 0.09 2.12 7.24 -2.39 -0.02 2.10 16 31 C 0.02 0.88 5.59 86.51 0.48 1.36 16 32 H 0.07 3.56 4.65 -2.39 -0.01 3.55 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 1.75 7.66 -2.39 -0.02 1.73 16 35 H 0.04 1.55 5.73 -2.39 -0.01 1.54 16 36 H 0.04 1.97 6.43 -2.38 -0.02 1.95 16 37 H 0.26 13.87 8.31 -92.71 -0.77 13.09 16 38 H 0.04 1.47 4.98 -2.39 -0.01 1.46 16 39 H 0.07 2.57 7.61 -2.39 -0.02 2.55 16 40 H 0.04 1.17 7.23 -2.39 -0.02 1.15 16 41 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.11 3.01 5.18 -2.39 -0.01 3.00 16 43 H 0.03 0.98 7.95 -2.39 -0.02 0.96 16 44 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.12 1.61 8.04 -2.39 -0.02 1.59 16 46 H 0.42 3.04 8.60 -92.71 -0.80 2.24 16 47 H 0.06 1.18 7.58 -2.39 -0.02 1.16 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 52 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 54 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 55 H 0.03 1.27 5.19 -2.39 -0.01 1.26 16 Total: -1.00 -65.33 400.85 -0.96 -66.29 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.08 Total: 22.09 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.27 Total: -17.26 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -6.68 Total: -87.31 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.66 Total: -28.48 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -65.33 -0.96 -66.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170044.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.959 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds