Wall clock time and date at job start Tue Mar 31 2020 23:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 H 1.09000 * 109.47005 * 178.49338 * 3 2 1 5 5 C 1.50697 * 109.47093 * 298.49841 * 3 2 1 6 6 H 1.08006 * 120.00074 * 115.55660 * 5 3 2 7 7 C 1.37878 * 119.99969 * 295.55573 * 5 3 2 8 8 N 1.31513 * 119.99972 * 351.88015 * 7 5 3 9 9 Si 1.86802 * 119.99837 * 171.87892 * 7 5 3 10 10 H 1.48499 * 109.46843 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47146 * 299.99811 * 9 7 5 12 12 H 1.48493 * 109.47318 * 59.99905 * 9 7 5 13 13 N 1.46899 * 109.46788 * 58.49916 * 3 2 1 14 14 C 1.47009 * 111.00337 * 56.07358 * 13 3 2 15 15 C 1.53098 * 109.28838 * 182.39733 * 14 13 3 16 16 O 1.43029 * 109.24564 * 303.13224 * 15 14 13 17 17 C 1.42949 * 113.72350 * 58.59373 * 16 15 14 18 18 C 1.52980 * 109.52027 * 61.46458 * 17 16 15 19 19 C 1.53054 * 109.52881 * 58.68842 * 18 17 16 20 20 C 1.53193 * 109.30087 * 61.29900 * 19 18 17 21 21 N 1.46918 * 108.80293 * 305.35082 * 20 19 18 22 22 C 1.34780 * 120.63596 * 233.58555 * 21 20 19 23 23 O 1.21279 * 120.00157 * 185.00732 * 22 21 20 24 24 C 1.50703 * 119.99494 * 5.00973 * 22 21 20 25 25 C 1.52993 * 109.47442 * 84.53612 * 24 22 21 26 26 C 1.53008 * 109.46807 * 204.53272 * 24 22 21 27 27 C 1.46948 * 118.73396 * 53.61240 * 21 20 19 28 28 C 1.47031 * 110.99769 * 179.70613 * 13 3 2 29 29 H 1.09003 * 109.47083 * 305.29596 * 1 2 3 30 30 H 1.08994 * 109.47363 * 65.29974 * 1 2 3 31 31 H 1.08999 * 109.46998 * 185.30294 * 1 2 3 32 32 H 1.09003 * 109.46835 * 240.00193 * 2 1 3 33 33 H 1.08994 * 109.47275 * 120.00754 * 2 1 3 34 34 H 0.96997 * 119.99801 * 358.91037 * 8 7 5 35 35 H 1.08999 * 109.50622 * 302.34582 * 14 13 3 36 36 H 1.09003 * 109.49759 * 62.45829 * 14 13 3 37 37 H 1.08994 * 109.51476 * 183.19572 * 15 14 13 38 38 H 1.09006 * 109.54676 * 63.08237 * 15 14 13 39 39 H 1.09000 * 109.46301 * 178.70601 * 18 17 16 40 40 H 1.09007 * 109.46180 * 298.68202 * 18 17 16 41 41 H 1.09000 * 109.50016 * 181.24599 * 19 18 17 42 42 H 1.09002 * 109.49501 * 301.31583 * 19 18 17 43 43 H 1.08997 * 109.57879 * 65.14503 * 20 19 18 44 44 H 1.08996 * 109.58205 * 185.55636 * 20 19 18 45 45 H 1.08993 * 109.47312 * 324.53032 * 24 22 21 46 46 H 1.09003 * 109.47880 * 184.83181 * 25 24 22 47 47 H 1.09004 * 109.46905 * 304.83081 * 25 24 22 48 48 H 1.09004 * 109.47582 * 64.82524 * 25 24 22 49 49 H 1.09003 * 109.46852 * 60.00237 * 26 24 22 50 50 H 1.08992 * 109.47043 * 179.97438 * 26 24 22 51 51 H 1.08993 * 109.46989 * 299.99959 * 26 24 22 52 52 H 1.08999 * 109.58740 * 186.69389 * 27 21 20 53 53 H 1.08989 * 109.58958 * 66.25728 * 27 21 20 54 54 H 1.09002 * 109.50830 * 297.62841 * 28 13 3 55 55 H 1.08995 * 109.51109 * 57.76953 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0270 5 6 1.5683 2.1421 -1.2486 6 1 0.8874 2.9772 -1.1753 7 6 2.0060 1.7160 -2.4847 8 7 2.9537 0.8082 -2.5697 9 14 1.2527 2.4281 -4.0387 10 1 1.8918 1.8085 -5.2274 11 1 -0.2050 2.1448 -4.0570 12 1 1.4719 3.8965 -4.0671 13 7 1.5209 2.1453 1.1809 14 6 1.8837 1.4373 2.4172 15 6 1.2741 2.1686 3.6162 16 8 1.7236 3.5264 3.6186 17 6 1.3882 4.2454 2.4295 18 6 -0.1330 4.3017 2.2782 19 6 -0.7445 4.9815 3.5056 20 6 -0.2137 6.4149 3.6075 21 7 1.2550 6.3771 3.6083 22 6 1.9570 6.9805 4.5879 23 8 3.1678 7.0206 4.5298 24 6 1.2374 7.6052 5.7554 25 6 0.9489 6.5342 6.8091 26 6 2.1135 8.7001 6.3677 27 6 1.9440 5.6693 2.5203 28 6 1.9972 3.5359 1.2181 29 1 -0.3633 0.5938 0.8388 30 1 -0.3634 0.4294 -0.9336 31 1 -0.3633 -1.0233 0.0950 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.3559 0.4499 -1.7629 35 1 1.4996 0.4180 2.3789 36 1 2.9687 1.4144 2.5183 37 1 1.5874 1.6797 4.5385 38 1 0.1867 2.1453 3.5432 39 1 -0.3882 4.8698 1.3836 40 1 -0.5270 3.2891 2.1900 41 1 -1.8299 5.0016 3.4074 42 1 -0.4705 4.4267 4.4030 43 1 -0.5637 6.9956 2.7541 44 1 -0.5679 6.8707 4.5321 45 1 0.2986 8.0403 5.4129 46 1 0.3540 6.9667 7.6136 47 1 0.3978 5.7129 6.3509 48 1 1.8893 6.1596 7.2135 49 1 2.3190 9.4632 5.6170 50 1 1.5929 9.1523 7.2118 51 1 3.0523 8.2651 6.7101 52 1 3.0133 5.6316 2.7285 53 1 1.7710 6.1899 1.5786 54 1 3.0842 3.5463 1.2986 55 1 1.6941 4.0490 0.3054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170159.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:09 Heat of formation + Delta-G solvation = -101.266446 kcal Electronic energy + Delta-G solvation = -32800.813146 eV Core-core repulsion = 28836.604218 eV Total energy + Delta-G solvation = -3964.208928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.91222 -40.65133 -38.49809 -37.17455 -35.51640 -34.83127 -33.64044 -33.00433 -32.48001 -29.91179 -28.09151 -27.71707 -26.96799 -26.49036 -24.88979 -24.31084 -23.48805 -22.64818 -21.16117 -20.29981 -19.55165 -18.79432 -18.47980 -17.49484 -17.19484 -16.65613 -16.51315 -16.17536 -16.01471 -15.73553 -15.64281 -15.24631 -15.05894 -14.91450 -14.79988 -14.46419 -14.13356 -14.01352 -13.63492 -13.61302 -13.35423 -13.26426 -13.19125 -13.14375 -12.96469 -12.80061 -12.66586 -12.52329 -12.25809 -12.11999 -12.08040 -11.99097 -11.96635 -11.88462 -11.82618 -11.67323 -11.56698 -11.18458 -10.69074 -10.54124 -10.49879 -10.31217 -9.63836 -9.14220 -8.55388 -6.25413 1.53913 1.60910 1.61703 1.79064 1.97242 2.57372 2.68883 3.04085 3.23925 3.51085 3.72346 3.80072 3.84226 3.94237 4.05256 4.09518 4.10761 4.14872 4.20036 4.29873 4.34694 4.43702 4.45033 4.48085 4.55123 4.60727 4.62444 4.68042 4.76219 4.78490 4.80530 4.82051 4.85006 4.88555 4.91580 4.97700 5.03002 5.04825 5.11876 5.17799 5.28423 5.29369 5.31665 5.36551 5.44070 5.45136 5.49616 5.67781 5.91335 6.01228 6.22769 6.35569 6.44840 6.48432 6.69960 7.18953 7.52119 8.80778 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.003325 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.178098 B = 8418.263143 C = 8978.136223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.110 4.110 3 C 0.210 3.790 4 H -0.060 1.060 5 C -0.575 4.575 6 H 0.055 0.945 7 C -0.028 4.028 8 N -0.940 5.940 9 Si 1.107 2.893 10 H -0.292 1.292 11 H -0.267 1.267 12 H -0.274 1.274 13 N -0.504 5.504 14 C 0.010 3.990 15 C 0.072 3.928 16 O -0.384 6.384 17 C 0.121 3.879 18 C -0.128 4.128 19 C -0.123 4.123 20 C 0.100 3.900 21 N -0.600 5.600 22 C 0.511 3.489 23 O -0.596 6.596 24 C -0.108 4.108 25 C -0.136 4.136 26 C -0.133 4.133 27 C 0.129 3.871 28 C 0.049 3.951 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.255 0.745 35 H 0.092 0.908 36 H 0.004 0.996 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.041 0.959 52 H 0.062 0.938 53 H 0.091 0.909 54 H -0.005 1.005 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 11.727 18.106 25.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C 0.102 3.898 4 H -0.043 1.043 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.226 4.226 8 N -0.578 5.578 9 Si 0.930 3.070 10 H -0.218 1.218 11 H -0.193 1.193 12 H -0.199 1.199 13 N -0.228 5.228 14 C -0.119 4.119 15 C -0.005 4.005 16 O -0.303 6.303 17 C 0.080 3.920 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.021 4.021 21 N -0.332 5.332 22 C 0.301 3.699 23 O -0.476 6.476 24 C -0.128 4.128 25 C -0.194 4.194 26 C -0.191 4.191 27 C 0.005 3.995 28 C -0.080 4.080 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.023 0.977 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.143 0.857 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.110 0.890 51 H 0.060 0.940 52 H 0.080 0.920 53 H 0.109 0.891 54 H 0.013 0.987 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.768 11.768 16.553 23.989 hybrid contribution 2.021 -0.777 0.795 2.307 sum -10.746 10.991 17.348 23.178 Atomic orbital electron populations 1.21308 0.94073 0.99419 1.01650 1.21520 0.98169 0.96724 0.98405 1.19228 0.89281 0.92214 0.89045 1.04289 1.21977 1.29883 1.17698 0.91743 0.92700 1.27009 0.95035 0.95706 1.04872 1.70919 1.24861 1.30012 1.31977 0.83052 0.76037 0.75735 0.72167 1.21760 1.19260 1.19899 1.62244 1.58137 1.00966 1.01451 1.22923 0.97053 1.00025 0.91885 1.22711 0.99384 0.81339 0.97059 1.87987 1.79872 1.23823 1.38616 1.21747 0.96050 0.90502 0.83684 1.21897 0.92592 1.02645 0.99490 1.21850 1.01424 0.95170 0.97633 1.22168 0.76977 0.98001 1.04996 1.48098 1.08295 1.52508 1.24280 1.21540 0.87329 0.77411 0.83639 1.90654 1.16780 1.61238 1.78955 1.21413 1.00700 0.97808 0.92917 1.21729 1.01926 0.97595 0.98101 1.21660 0.99294 0.96898 1.01252 1.21342 0.97293 0.89734 0.91142 1.22441 0.95071 0.91407 0.99081 0.91836 0.94424 0.93630 0.94695 0.94246 0.93488 0.89001 0.97726 0.87193 0.90761 0.90881 0.90748 0.87849 0.91608 0.89638 0.86496 0.85727 0.88469 0.91878 0.94055 0.93193 0.88954 0.93954 0.91975 0.89148 0.98717 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.24 9.45 71.98 0.68 -3.56 16 2 C -0.11 -4.99 4.86 30.60 0.15 -4.84 16 3 C 0.21 10.36 1.38 44.17 0.06 10.42 16 4 H -0.06 -3.51 7.52 -2.39 -0.02 -3.53 16 5 C -0.57 -30.57 6.64 25.60 0.17 -30.40 16 6 H 0.05 2.89 6.90 -2.91 -0.02 2.87 16 7 C -0.03 -1.56 5.21 84.66 0.44 -1.12 16 8 N -0.94 -56.73 12.93 21.45 0.28 -56.45 16 9 Si 1.11 49.27 29.91 68.60 2.05 51.33 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 N -0.50 -20.44 3.03 -874.47 -2.65 -23.08 16 14 C 0.01 0.34 5.16 86.32 0.45 0.79 16 15 C 0.07 2.02 6.61 72.01 0.48 2.49 16 16 O -0.38 -12.37 9.48 -148.98 -1.41 -13.78 16 17 C 0.12 3.74 0.70 -10.75 -0.01 3.74 16 18 C -0.13 -3.18 4.22 30.61 0.13 -3.05 16 19 C -0.12 -2.03 5.94 30.68 0.18 -1.85 16 20 C 0.10 1.49 6.26 86.36 0.54 2.03 16 21 N -0.60 -14.50 2.92 -819.02 -2.39 -16.88 16 22 C 0.51 13.63 6.81 87.66 0.60 14.22 16 23 O -0.60 -22.07 15.52 -3.03 -0.05 -22.12 16 24 C -0.11 -1.76 2.42 -11.54 -0.03 -1.78 16 25 C -0.14 -1.92 9.04 71.98 0.65 -1.27 16 26 C -0.13 -2.22 8.72 71.98 0.63 -1.59 16 27 C 0.13 3.91 5.37 86.34 0.46 4.38 16 28 C 0.05 1.97 4.10 86.29 0.35 2.32 16 29 H 0.06 2.33 7.33 -2.39 -0.02 2.31 16 30 H 0.04 1.64 7.45 -2.39 -0.02 1.62 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.03 1.80 6.28 -2.39 -0.01 1.78 16 33 H 0.04 1.62 6.38 -2.39 -0.02 1.61 16 34 H 0.25 15.75 6.05 -92.71 -0.56 15.19 16 35 H 0.09 3.06 6.10 -2.39 -0.01 3.04 16 36 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.07 1.86 6.53 -2.38 -0.02 1.85 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.05 6.17 -2.38 -0.01 2.03 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.20 7.62 -2.39 -0.02 1.19 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.12 1.03 5.28 -2.39 -0.01 1.02 16 45 H 0.12 1.20 6.28 -2.39 -0.02 1.18 16 46 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.06 0.90 8.03 -2.38 -0.02 0.88 16 48 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.04 0.91 7.87 -2.39 -0.02 0.89 16 52 H 0.06 2.31 7.04 -2.39 -0.02 2.30 16 53 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 54 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 55 H 0.08 3.37 6.51 -2.39 -0.02 3.36 16 Total: -1.00 -73.09 401.06 2.83 -70.26 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.06 Total: 19.80 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 5.93 Total: -9.07 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -4.76 Total: -96.42 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.46 Total: -35.90 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.33 kcal Total: -73.09 2.83 -70.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170159.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.006 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds