Wall clock time and date at job start Tue Mar 31 2020 23:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47325 * 2 1 4 4 H 1.08998 * 109.47296 * 54.99081 * 3 2 1 5 5 C 1.50703 * 109.47106 * 174.99761 * 3 2 1 6 6 H 1.08000 * 119.99673 * 119.99960 * 5 3 2 7 7 C 1.37871 * 119.99994 * 299.99787 * 5 3 2 8 8 N 1.31517 * 119.99982 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00152 * 180.02562 * 7 5 3 10 10 H 1.48510 * 109.46970 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47483 * 119.99337 * 9 7 5 12 12 H 1.48497 * 109.47359 * 240.00009 * 9 7 5 13 13 N 1.46901 * 109.46647 * 294.99556 * 3 2 1 14 14 C 1.47015 * 111.00052 * 303.63216 * 13 3 2 15 15 C 1.53103 * 109.27080 * 177.57922 * 14 13 3 16 16 O 1.43029 * 109.24115 * 56.89273 * 15 14 13 17 17 C 1.42949 * 113.75221 * 301.41341 * 16 15 14 18 18 C 1.52977 * 109.53614 * 298.44726 * 17 16 15 19 19 C 1.53049 * 109.53498 * 301.31691 * 18 17 16 20 20 C 1.53188 * 109.30790 * 298.71568 * 19 18 17 21 21 N 1.46926 * 108.80165 * 54.64643 * 20 19 18 22 22 C 1.34775 * 120.64339 * 126.35478 * 21 20 19 23 23 O 1.21278 * 120.00596 * 185.24402 * 22 21 20 24 24 C 1.50710 * 119.99693 * 5.24156 * 22 21 20 25 25 C 1.53001 * 109.47141 * 274.62309 * 24 22 21 26 26 C 1.53007 * 109.46762 * 154.62499 * 24 22 21 27 27 C 1.46944 * 118.72260 * 306.62643 * 21 20 19 28 28 C 1.47024 * 110.99931 * 180.02562 * 13 3 2 29 29 H 1.09003 * 109.47106 * 300.01069 * 1 2 3 30 30 H 1.09006 * 109.46605 * 60.00348 * 1 2 3 31 31 H 1.08993 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47560 * 239.99063 * 2 1 3 33 33 H 1.09010 * 109.46909 * 119.99245 * 2 1 3 34 34 H 0.97001 * 119.99643 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.50382 * 297.51774 * 14 13 3 36 36 H 1.09007 * 109.50566 * 57.64369 * 14 13 3 37 37 H 1.08995 * 109.50735 * 176.82401 * 15 14 13 38 38 H 1.09001 * 109.50774 * 296.92100 * 15 14 13 39 39 H 1.08992 * 109.46020 * 181.29352 * 18 17 16 40 40 H 1.09005 * 109.45807 * 61.33325 * 18 17 16 41 41 H 1.08992 * 109.50004 * 178.76582 * 19 18 17 42 42 H 1.08996 * 109.50006 * 58.66350 * 19 18 17 43 43 H 1.08994 * 109.58701 * 294.84490 * 20 19 18 44 44 H 1.09012 * 109.58115 * 174.43766 * 20 19 18 45 45 H 1.08995 * 109.47065 * 34.62537 * 24 22 21 46 46 H 1.08995 * 109.47327 * 300.00067 * 25 24 22 47 47 H 1.09001 * 109.47081 * 60.00229 * 25 24 22 48 48 H 1.09002 * 109.46925 * 179.97438 * 25 24 22 49 49 H 1.08993 * 109.46713 * 175.09895 * 26 24 22 50 50 H 1.08997 * 109.47154 * 295.09734 * 26 24 22 51 51 H 1.08999 * 109.46848 * 55.09908 * 26 24 22 52 52 H 1.08992 * 109.59170 * 173.08028 * 27 21 20 53 53 H 1.09004 * 109.58541 * 293.52054 * 27 21 20 54 54 H 1.08997 * 109.50661 * 62.35050 * 28 13 3 55 55 H 1.09004 * 109.50594 * 302.22237 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8812 1.3820 10 1 6.5988 1.5461 0.1943 11 1 6.3990 1.6168 2.6103 12 1 6.4970 -0.5175 1.4633 13 7 1.6515 2.0992 -1.2553 14 6 2.1488 1.3494 -2.4180 15 6 1.6715 2.0331 -3.7020 16 8 2.1156 3.3927 -3.7051 17 6 1.6519 4.1525 -2.5866 18 6 0.1232 4.2074 -2.6039 19 6 -0.3514 4.8396 -3.9145 20 6 0.1867 6.2707 -4.0105 21 7 1.6468 6.2393 -3.8502 22 6 2.4512 6.8087 -4.7695 23 8 3.6549 6.6944 -4.6763 24 6 1.8547 7.5876 -5.9136 25 6 1.4933 6.6288 -7.0498 26 6 2.8716 8.6143 -6.4166 27 6 2.2136 5.5699 -2.6713 28 6 2.1263 3.4902 -1.2912 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0602 2.9504 35 1 3.2384 1.3298 -2.3995 36 1 1.7652 0.3295 -2.3846 37 1 2.0845 1.5133 -4.5664 38 1 0.5827 2.0051 -3.7462 39 1 -0.2282 4.8061 -1.7637 40 1 -0.2774 3.1969 -2.5223 41 1 -1.4410 4.8584 -3.9357 42 1 0.0193 4.2544 -4.7559 43 1 -0.2544 6.8805 -3.2221 44 1 -0.0650 6.6911 -4.9843 45 1 0.9564 8.1026 -5.5732 46 1 2.3916 6.1138 -7.3902 47 1 0.7689 5.8974 -6.6915 48 1 1.0615 7.1921 -7.8771 49 1 2.4742 9.1173 -7.2981 50 1 3.0634 9.3489 -5.6346 51 1 3.8014 8.1079 -6.6754 52 1 3.2989 5.5265 -2.7622 53 1 1.9418 6.1220 -1.7716 54 1 3.2155 3.5040 -1.2528 55 1 1.7244 4.0341 -0.4364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170161.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:17 Heat of formation + Delta-G solvation = -100.185448 kcal Electronic energy + Delta-G solvation = -32713.424735 eV Core-core repulsion = 28749.262682 eV Total energy + Delta-G solvation = -3964.162053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.84551 -40.57991 -38.32897 -37.01514 -35.49836 -34.54599 -33.57047 -33.01603 -32.53139 -29.85239 -28.35317 -27.96692 -26.86088 -26.32111 -24.47293 -24.30043 -23.45906 -22.56314 -20.95742 -20.29110 -19.51801 -18.46009 -18.37152 -17.54167 -17.10163 -16.63334 -16.54955 -16.31046 -15.90674 -15.75688 -15.48694 -15.15085 -14.95915 -14.80531 -14.65856 -14.36191 -14.12555 -13.78602 -13.63936 -13.35378 -13.33739 -13.27226 -13.20675 -13.04239 -12.93152 -12.80337 -12.78022 -12.60218 -12.45087 -12.22703 -12.06574 -11.97079 -11.92869 -11.80369 -11.64719 -11.52605 -11.44364 -11.09273 -11.05630 -10.64073 -10.46637 -10.28104 -9.58640 -9.02364 -8.09280 -6.30578 1.28346 1.32662 1.42044 1.66000 2.01358 2.34387 2.79474 3.08930 3.26716 3.53918 3.81896 3.89308 3.91715 3.98621 4.11984 4.14241 4.20295 4.26008 4.39169 4.42420 4.46865 4.50418 4.61226 4.65040 4.67607 4.71382 4.74064 4.77349 4.80381 4.85888 4.88529 4.91910 4.92642 4.95842 5.02747 5.04947 5.12641 5.19162 5.21190 5.32137 5.33206 5.42081 5.42525 5.44731 5.47663 5.54850 5.58489 5.76577 6.00027 6.13560 6.30676 6.34693 6.48816 6.53948 6.88978 7.23481 7.39812 8.85439 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015614 B = 0.003476 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.787608 B = 8054.295953 C = 9098.529053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.109 4.109 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.037 0.963 7 C 0.028 3.972 8 N -0.905 5.905 9 Si 0.938 3.062 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.510 5.510 14 C 0.024 3.976 15 C 0.070 3.930 16 O -0.387 6.387 17 C 0.117 3.883 18 C -0.128 4.128 19 C -0.124 4.124 20 C 0.100 3.900 21 N -0.601 5.601 22 C 0.509 3.491 23 O -0.596 6.596 24 C -0.106 4.106 25 C -0.138 4.138 26 C -0.135 4.135 27 C 0.127 3.873 28 C 0.044 3.956 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.007 0.993 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.038 0.962 47 H 0.067 0.933 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.051 0.949 51 H 0.040 0.960 52 H 0.058 0.942 53 H 0.096 0.904 54 H 0.008 0.992 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 12.833 -16.265 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.114 3.886 4 H 0.027 0.973 5 C -0.590 4.590 6 H 0.055 0.945 7 C -0.172 4.172 8 N -0.544 5.544 9 Si 0.764 3.236 10 H -0.208 1.208 11 H -0.203 1.203 12 H -0.202 1.202 13 N -0.234 5.234 14 C -0.104 4.104 15 C -0.007 4.007 16 O -0.307 6.307 17 C 0.077 3.923 18 C -0.166 4.166 19 C -0.162 4.162 20 C -0.021 4.021 21 N -0.332 5.332 22 C 0.299 3.701 23 O -0.477 6.477 24 C -0.127 4.127 25 C -0.196 4.196 26 C -0.193 4.193 27 C 0.003 3.997 28 C -0.085 4.085 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.070 0.930 51 H 0.059 0.941 52 H 0.077 0.923 53 H 0.114 0.886 54 H 0.027 0.973 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.288 12.770 -16.200 24.538 hybrid contribution 2.759 -0.757 1.243 3.119 sum -10.529 12.013 -14.957 21.884 Atomic orbital electron populations 1.21561 0.95732 0.99952 1.00921 1.21493 0.94917 0.97805 1.00509 1.19062 0.91335 0.91737 0.86439 0.97255 1.21939 0.94443 1.37631 1.04999 0.94454 1.25473 1.01180 0.94964 0.95619 1.69975 1.35866 1.38869 1.09692 0.85831 0.82246 0.77862 0.77615 1.20824 1.20342 1.20212 1.62698 1.56821 1.00927 1.02908 1.22651 0.97006 0.98968 0.91814 1.22719 0.99860 0.81632 0.96443 1.87999 1.75006 1.22552 1.45117 1.21723 0.95514 0.90178 0.84913 1.21912 0.92616 1.02874 0.99198 1.21847 1.01981 0.95395 0.97006 1.22159 0.77207 0.97997 1.04724 1.48114 1.08286 1.54536 1.22286 1.21552 0.86323 0.78839 0.83405 1.90663 1.17499 1.62885 1.76613 1.21391 1.01061 0.96994 0.93276 1.21774 1.01492 0.98918 0.97387 1.21672 0.98183 0.97515 1.01883 1.21306 0.98736 0.90564 0.89116 1.22406 0.96995 0.91471 0.97661 0.94689 0.92086 0.93515 0.94806 0.91992 0.92811 0.97438 0.89789 0.88213 0.90780 0.90209 0.90614 0.87683 0.92218 0.89205 0.86853 0.85757 0.94287 0.91393 0.88498 0.88968 0.93014 0.94108 0.92342 0.88557 0.97324 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 9.80 71.98 0.71 -3.94 16 2 C -0.11 -5.01 4.94 30.60 0.15 -4.86 16 3 C 0.22 10.83 1.82 44.17 0.08 10.91 16 4 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 5 C -0.55 -30.40 7.10 25.60 0.18 -30.22 16 6 H 0.04 2.17 5.79 -2.91 -0.02 2.16 16 7 C 0.03 1.56 5.29 84.65 0.45 2.01 16 8 N -0.90 -51.42 11.29 21.45 0.24 -51.18 16 9 Si 0.94 45.09 29.54 68.60 2.03 47.12 16 10 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.51 -20.65 3.57 -874.45 -3.12 -23.77 16 14 C 0.02 0.94 4.95 86.32 0.43 1.37 16 15 C 0.07 2.17 6.61 72.02 0.48 2.64 16 16 O -0.39 -13.40 9.47 -148.98 -1.41 -14.82 16 17 C 0.12 3.65 0.70 -10.89 -0.01 3.64 16 18 C -0.13 -3.00 4.23 30.60 0.13 -2.87 16 19 C -0.12 -2.02 5.94 30.67 0.18 -1.84 16 20 C 0.10 1.45 5.96 86.36 0.51 1.96 16 21 N -0.60 -14.57 2.92 -819.81 -2.40 -16.96 16 22 C 0.51 13.90 6.80 87.66 0.60 14.50 16 23 O -0.60 -22.88 15.41 -3.02 -0.05 -22.92 16 24 C -0.11 -1.77 2.39 -11.53 -0.03 -1.80 16 25 C -0.14 -1.95 8.93 71.98 0.64 -1.31 16 26 C -0.13 -2.32 8.83 71.98 0.64 -1.69 16 27 C 0.13 3.83 5.35 86.19 0.46 4.30 16 28 C 0.04 1.74 4.01 86.29 0.35 2.09 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 2.09 7.75 -2.38 -0.02 2.07 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.52 6.02 -2.39 -0.01 1.51 16 33 H 0.06 3.27 5.95 -2.38 -0.01 3.26 16 34 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 35 H 0.01 0.34 6.78 -2.39 -0.02 0.32 16 36 H 0.08 3.14 6.00 -2.38 -0.01 3.12 16 37 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.07 1.98 6.54 -2.39 -0.02 1.96 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.96 6.18 -2.38 -0.01 1.94 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.15 7.62 -2.39 -0.02 1.14 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.11 1.02 4.81 -2.38 -0.01 1.00 16 45 H 0.12 1.23 6.74 -2.39 -0.02 1.21 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.89 7.10 -2.39 -0.02 0.87 16 48 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.04 0.93 7.69 -2.39 -0.02 0.91 16 52 H 0.06 2.24 7.00 -2.39 -0.02 2.22 16 53 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 54 H 0.01 0.40 6.55 -2.39 -0.02 0.39 16 55 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -71.50 399.85 2.10 -69.41 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.86 Total: 18.24 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 5.94 Total: -5.11 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -5.27 Total: -91.92 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.46 Total: -37.74 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.50 2.10 -69.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170161.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.780 kcal (2) G-P(sol) polarization free energy of solvation -71.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds