Wall clock time and date at job start Tue Mar 31 2020 23:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47522 * 2 1 4 4 H 1.08993 * 109.47336 * 181.84994 * 3 2 1 5 5 C 1.50709 * 109.46777 * 61.84996 * 3 2 1 6 6 H 1.07997 * 119.99761 * 239.99998 * 5 3 2 7 7 C 1.37877 * 119.99925 * 60.00257 * 5 3 2 8 8 N 1.31523 * 119.99781 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99936 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47457 * 90.00202 * 9 7 5 11 11 H 1.48505 * 109.46769 * 210.00152 * 9 7 5 12 12 H 1.48495 * 109.47077 * 329.99920 * 9 7 5 13 13 N 1.46898 * 109.47068 * 301.85609 * 3 2 1 14 14 C 1.46850 * 111.00195 * 181.24003 * 13 3 2 15 15 C 1.53030 * 109.52361 * 185.83734 * 14 13 3 16 16 C 1.53121 * 109.28112 * 300.81846 * 15 14 13 17 17 N 1.46903 * 109.52523 * 177.56204 * 16 15 14 18 18 C 1.46848 * 110.99894 * 50.91639 * 17 16 15 19 19 C 1.53035 * 109.52148 * 185.84091 * 18 17 16 20 20 C 1.53124 * 109.27812 * 300.82045 * 19 18 17 21 21 C 1.53114 * 109.15798 * 57.65479 * 20 19 18 22 22 H 1.08998 * 109.53755 * 62.30525 * 21 20 19 23 23 C 1.50702 * 109.50169 * 182.40612 * 21 20 19 24 24 O 1.20824 * 120.00134 * 119.80672 * 23 21 20 25 25 O 1.34230 * 119.99796 * 299.52397 * 23 21 20 26 26 C 1.45201 * 116.99993 * 179.97438 * 25 23 21 27 27 C 1.46842 * 110.99939 * 175.12657 * 17 16 15 28 28 C 1.53121 * 109.20871 * 57.62354 * 16 15 14 29 29 C 1.46849 * 110.99809 * 305.44881 * 13 3 2 30 30 H 1.09002 * 109.46828 * 304.74517 * 1 2 3 31 31 H 1.09004 * 109.46987 * 64.74469 * 1 2 3 32 32 H 1.08999 * 109.47229 * 184.74904 * 1 2 3 33 33 H 1.09000 * 109.46945 * 239.99924 * 2 1 3 34 34 H 1.08995 * 109.47111 * 120.00427 * 2 1 3 35 35 H 0.96998 * 119.99817 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45805 * 65.81738 * 14 13 3 37 37 H 1.09001 * 109.45962 * 305.85619 * 14 13 3 38 38 H 1.09006 * 109.50320 * 180.88019 * 15 14 13 39 39 H 1.08999 * 109.54095 * 60.78641 * 15 14 13 40 40 H 1.08997 * 109.52082 * 297.69251 * 16 15 14 41 41 H 1.08998 * 109.46349 * 305.85699 * 18 17 16 42 42 H 1.09000 * 109.46206 * 65.82274 * 18 17 16 43 43 H 1.09001 * 109.50432 * 60.76278 * 19 18 17 44 44 H 1.08998 * 109.50367 * 180.88334 * 19 18 17 45 45 H 1.09002 * 109.51899 * 297.75291 * 20 19 18 46 46 H 1.09002 * 109.52119 * 177.55922 * 20 19 18 47 47 H 1.08998 * 109.47115 * 300.00593 * 26 25 23 48 48 H 1.08997 * 109.46859 * 60.00802 * 26 25 23 49 49 H 1.09000 * 109.47103 * 180.02562 * 26 25 23 50 50 H 1.09006 * 109.46428 * 54.14480 * 27 17 16 51 51 H 1.08997 * 109.46506 * 294.17922 * 27 17 16 52 52 H 1.08994 * 109.50418 * 62.32282 * 28 16 15 53 53 H 1.09000 * 109.50123 * 182.43965 * 28 16 15 54 54 H 1.09000 * 109.46415 * 294.18041 * 29 13 3 55 55 H 1.08998 * 109.46172 * 54.14508 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4426 -0.0332 5 6 1.5756 2.1395 1.2529 6 1 0.9521 3.0185 1.1822 7 6 1.9465 1.6550 2.4892 8 7 2.7054 0.5842 2.5752 9 14 1.3713 2.5193 4.0421 10 1 0.0759 1.9404 4.4800 11 1 2.3828 2.3365 5.1139 12 1 1.1982 3.9683 3.7668 13 7 1.5142 2.1478 -1.1764 14 6 2.0077 3.5300 -1.2254 15 6 1.3283 4.2750 -2.3766 16 6 1.6343 3.5571 -3.6940 17 7 0.9370 4.2340 -4.7956 18 6 1.2031 5.6781 -4.7784 19 6 0.3495 6.3681 -5.8448 20 6 0.6882 5.7841 -7.2192 21 6 0.4485 4.2720 -7.1956 22 1 -0.6054 4.0730 -7.0016 23 6 0.8356 3.6804 -8.5265 24 8 1.7030 2.8413 -8.5853 25 8 0.2129 4.0816 -9.6459 26 6 0.6377 3.4694 -10.8921 27 6 1.2992 3.6427 -6.0900 28 6 1.1551 2.1058 -3.6000 29 6 1.8384 1.4241 -2.4123 30 1 -0.3633 0.5857 0.8445 31 1 -0.3633 0.4385 -0.9295 32 1 -0.3634 -1.0241 0.0851 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.9667 0.2436 3.4450 36 1 3.0863 3.5251 -1.3823 37 1 1.7801 4.0305 -0.2843 38 1 1.7064 5.2964 -2.4225 39 1 0.2507 4.2930 -2.2137 40 1 2.7086 3.5747 -3.8774 41 1 0.9541 6.0816 -3.7969 42 1 2.2581 5.8555 -4.9868 43 1 -0.7061 6.2027 -5.6292 44 1 0.5588 7.4378 -5.8424 45 1 1.7343 5.9835 -7.4519 46 1 0.0518 6.2421 -7.9764 47 1 1.6956 3.6748 -11.0557 48 1 0.4806 2.3921 -10.8397 49 1 0.0560 3.8820 -11.7164 50 1 1.1200 2.5679 -6.0612 51 1 2.3538 3.8296 -6.2923 52 1 0.0748 2.0879 -3.4565 53 1 1.4094 1.5783 -4.5193 54 1 2.9178 1.4290 -2.5637 55 1 1.4877 0.3951 -2.3332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178085.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:44 Heat of formation + Delta-G solvation = -100.998733 kcal Electronic energy + Delta-G solvation = -31263.247397 eV Core-core repulsion = 27299.050078 eV Total energy + Delta-G solvation = -3964.197319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.84271 -40.67666 -39.18381 -37.56840 -36.52732 -34.54422 -33.15344 -32.63564 -31.49638 -30.91114 -28.68272 -28.18254 -25.96909 -25.60244 -24.77619 -23.77286 -22.89488 -22.00606 -21.02041 -20.72296 -20.34397 -18.66974 -18.12059 -17.98134 -17.49833 -17.20642 -16.56855 -16.08072 -15.83420 -15.67264 -15.54898 -15.27718 -14.94536 -14.85489 -14.70697 -14.49906 -14.23183 -13.99164 -13.81241 -13.73870 -13.57473 -13.41265 -13.12058 -12.96209 -12.75503 -12.68829 -12.45854 -12.39501 -12.24324 -12.06491 -12.02512 -11.87604 -11.81113 -11.71577 -11.59723 -11.47922 -11.38672 -11.25343 -11.08673 -11.03767 -10.66113 -10.38916 -9.32212 -8.84971 -8.05107 -6.14886 1.09936 1.43790 1.45099 1.54231 1.64525 2.45433 2.86544 3.22290 3.38378 3.50118 3.67787 3.81088 3.91240 3.98567 4.14629 4.22232 4.29007 4.29864 4.30698 4.31680 4.39193 4.49341 4.52792 4.56436 4.63657 4.67035 4.71884 4.72121 4.75067 4.80473 4.83971 4.89314 4.92222 4.94618 4.98852 5.10680 5.11332 5.18004 5.25566 5.27320 5.32399 5.33192 5.37552 5.43530 5.51363 5.56787 5.77129 5.81063 5.91810 6.07475 6.15274 6.35730 6.48800 6.66286 6.81206 6.98540 7.52704 9.00404 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002405 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.308577 B =11637.909936 C =12459.121168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.223 3.777 4 H -0.050 1.050 5 C -0.498 4.498 6 H 0.058 0.942 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.526 5.526 14 C 0.066 3.934 15 C -0.094 4.094 16 C 0.096 3.904 17 N -0.527 5.527 18 C 0.040 3.960 19 C -0.106 4.106 20 C -0.106 4.106 21 C -0.071 4.071 22 H 0.132 0.868 23 C 0.470 3.530 24 O -0.541 6.541 25 O -0.357 6.357 26 C 0.027 3.973 27 C 0.073 3.927 28 C -0.093 4.093 29 C 0.053 3.947 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.259 0.741 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.023 0.977 41 H 0.089 0.911 42 H 0.027 0.973 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.134 0.866 50 H 0.075 0.925 51 H 0.026 0.974 52 H 0.077 0.923 53 H 0.068 0.932 54 H 0.004 0.996 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 11.356 -24.268 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 N -0.251 5.251 14 C -0.063 4.063 15 C -0.132 4.132 16 C -0.012 4.012 17 N -0.251 5.251 18 C -0.088 4.088 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.090 4.090 22 H 0.149 0.851 23 C 0.314 3.686 24 O -0.431 6.431 25 O -0.273 6.273 26 C -0.066 4.066 27 C -0.055 4.055 28 C -0.131 4.131 29 C -0.075 4.075 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.020 0.980 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.152 0.848 50 H 0.094 0.906 51 H 0.044 0.956 52 H 0.095 0.905 53 H 0.087 0.913 54 H 0.022 0.978 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.164 10.956 -24.092 27.419 hybrid contribution 2.360 -0.346 0.872 2.540 sum -4.804 10.610 -23.220 25.977 Atomic orbital electron populations 1.21316 0.95444 0.98536 1.01116 1.21476 0.96639 0.97461 0.99188 1.19039 0.89741 0.91780 0.87874 1.03238 1.21249 1.30258 1.11636 0.90511 0.92351 1.25649 0.95456 0.95778 1.01840 1.70027 1.37586 1.23923 1.24680 0.85617 0.77815 0.79213 0.79362 1.20252 1.21484 1.19209 1.62022 1.59400 1.01814 1.01820 1.21919 0.94854 0.90356 0.99126 1.21629 1.01843 0.98000 0.91704 1.21513 0.94410 0.94430 0.90827 1.61923 1.58003 1.03765 1.01435 1.22380 0.97926 0.87079 1.01385 1.21570 1.00962 0.99954 0.91918 1.21580 1.02406 0.90713 0.99627 1.21069 1.03858 0.97859 0.86220 0.85051 1.24058 0.78293 0.78987 0.87308 1.90675 1.32034 1.32645 1.87745 1.86499 1.60533 1.63560 1.16738 1.23553 1.01787 0.98857 0.82426 1.21818 0.96224 0.99382 0.88106 1.21524 1.01442 0.93966 0.96174 1.22110 0.96116 0.98708 0.90598 0.94355 0.92806 0.94676 0.95524 0.92043 0.93230 0.98017 0.91407 0.90256 0.90502 0.95875 0.89300 0.95461 0.90010 0.88927 0.92260 0.88543 0.92169 0.92197 0.84807 0.90634 0.95618 0.90452 0.91334 0.97827 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.43 71.98 0.68 -3.96 16 2 C -0.11 -5.31 4.95 30.59 0.15 -5.16 16 3 C 0.22 11.33 1.76 44.17 0.08 11.41 16 4 H -0.05 -2.92 8.14 -2.39 -0.02 -2.94 16 5 C -0.50 -26.92 6.61 25.60 0.17 -26.75 16 6 H 0.06 3.14 6.79 -2.91 -0.02 3.12 16 7 C 0.01 0.60 5.30 84.65 0.45 1.05 16 8 N -0.92 -53.39 11.31 21.45 0.24 -53.15 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.53 -22.19 3.79 -875.51 -3.32 -25.51 16 14 C 0.07 2.56 5.26 86.32 0.45 3.02 16 15 C -0.09 -2.74 4.74 30.64 0.15 -2.59 16 16 C 0.10 2.65 2.02 45.00 0.09 2.74 16 17 N -0.53 -11.76 4.52 -870.66 -3.94 -15.70 16 18 C 0.04 0.72 5.01 86.32 0.43 1.15 16 19 C -0.11 -1.34 6.09 30.65 0.19 -1.16 16 20 C -0.11 -1.38 5.22 30.67 0.16 -1.22 16 21 C -0.07 -1.21 2.79 -11.49 -0.03 -1.24 16 22 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 23 C 0.47 9.51 7.25 71.24 0.52 10.02 16 24 O -0.54 -14.62 15.73 21.97 0.35 -14.27 16 25 O -0.36 -5.88 10.50 -51.42 -0.54 -6.42 16 26 C 0.03 0.31 10.56 113.37 1.20 1.51 16 27 C 0.07 1.61 3.86 86.33 0.33 1.94 16 28 C -0.09 -2.76 5.23 30.65 0.16 -2.60 16 29 C 0.05 1.97 4.87 86.33 0.42 2.39 16 30 H 0.04 1.81 7.12 -2.39 -0.02 1.79 16 31 H 0.05 2.17 7.28 -2.39 -0.02 2.16 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.03 1.19 6.31 -2.39 -0.02 1.18 16 34 H 0.06 3.38 6.02 -2.39 -0.01 3.37 16 35 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.07 2.86 6.38 -2.39 -0.02 2.84 16 38 H 0.08 1.97 6.36 -2.38 -0.02 1.96 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.02 0.70 8.13 -2.39 -0.02 0.68 16 41 H 0.09 1.60 5.89 -2.39 -0.01 1.59 16 42 H 0.03 0.52 8.14 -2.39 -0.02 0.51 16 43 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 49 H 0.13 0.62 8.14 -2.39 -0.02 0.61 16 50 H 0.08 1.84 6.22 -2.38 -0.01 1.83 16 51 H 0.03 0.64 8.08 -2.39 -0.02 0.62 16 52 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 53 H 0.07 1.86 6.54 -2.39 -0.02 1.85 16 54 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 55 H 0.07 2.76 5.64 -2.39 -0.01 2.74 16 Total: -1.00 -64.80 404.86 1.26 -63.54 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.85 Total: 15.20 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.59 Total: -9.45 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -7.02 Total: -94.36 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.19 Total: -20.69 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.80 1.26 -63.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178085.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.457 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds