Wall clock time and date at job start Wed Apr 1 2020 00:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47222 * 2 1 4 4 H 1.09005 * 109.46653 * 53.95331 * 3 2 1 5 5 O 1.42898 * 109.47398 * 293.95276 * 3 2 1 6 6 C 1.42902 * 113.99845 * 150.77060 * 5 3 2 7 7 C 1.54265 * 110.03380 * 270.44029 * 6 5 3 8 8 C 1.54963 * 104.16323 * 217.13991 * 7 6 5 9 9 C 1.54893 * 102.77509 * 37.88891 * 8 7 6 10 10 C 1.53884 * 110.02834 * 153.22755 * 6 5 3 11 11 C 1.50701 * 109.47277 * 173.94918 * 3 2 1 12 12 O 1.21280 * 119.99938 * 113.17477 * 11 3 2 13 13 N 1.34770 * 120.00135 * 293.17325 * 11 3 2 14 14 C 1.46931 * 120.63227 * 355.39945 * 13 11 3 15 15 C 1.53195 * 108.77290 * 233.63106 * 14 13 11 16 16 C 1.53039 * 109.33908 * 305.37513 * 15 14 13 17 17 C 1.53041 * 109.53655 * 61.32001 * 16 15 14 18 18 H 1.08996 * 109.49983 * 58.65337 * 17 16 15 19 19 C 1.53003 * 109.49789 * 178.71579 * 17 16 15 20 20 N 1.46502 * 109.47183 * 294.93823 * 19 17 16 21 21 C 1.36937 * 119.99950 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00375 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99628 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99770 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00294 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47288 * 89.99680 * 25 23 21 27 27 H 1.48500 * 109.47182 * 210.00184 * 25 23 21 28 28 H 1.48500 * 109.46934 * 330.00128 * 25 23 21 29 29 C 1.46932 * 120.63146 * 175.41761 * 13 11 3 30 30 H 1.08999 * 109.47405 * 305.19483 * 1 2 3 31 31 H 1.08997 * 109.47205 * 65.19754 * 1 2 3 32 32 H 1.09007 * 109.47348 * 185.19438 * 1 2 3 33 33 H 1.09001 * 109.46744 * 240.00104 * 2 1 3 34 34 H 1.09000 * 109.47195 * 120.00305 * 2 1 3 35 35 H 1.08994 * 110.02094 * 31.83959 * 6 5 3 36 36 H 1.09002 * 110.48698 * 335.79315 * 7 6 5 37 37 H 1.09005 * 110.48324 * 98.42637 * 7 6 5 38 38 H 1.08999 * 110.71824 * 279.57544 * 8 7 6 39 39 H 1.09002 * 110.76271 * 156.22280 * 8 7 6 40 40 H 1.08997 * 110.48196 * 203.40609 * 9 8 7 41 41 H 1.08994 * 110.48404 * 80.76618 * 9 8 7 42 42 H 1.08996 * 110.02979 * 238.57023 * 10 6 5 43 43 H 1.08991 * 110.03007 * 359.97438 * 10 6 5 44 44 H 1.08992 * 109.58308 * 353.41160 * 14 13 11 45 45 H 1.08999 * 109.58763 * 113.84046 * 14 13 11 46 46 H 1.09002 * 109.49855 * 65.31245 * 15 14 13 47 47 H 1.09002 * 109.49698 * 185.38217 * 15 14 13 48 48 H 1.09003 * 109.43165 * 301.31512 * 16 15 14 49 49 H 1.08997 * 109.48599 * 181.35596 * 16 15 14 50 50 H 1.09003 * 109.46837 * 54.93194 * 19 17 16 51 51 H 1.09001 * 109.47344 * 174.93514 * 19 17 16 52 52 H 0.97001 * 119.99769 * 359.97438 * 20 19 17 53 53 H 0.97002 * 119.99731 * 179.97438 * 24 23 21 54 54 H 1.08993 * 109.58528 * 6.58456 * 29 13 11 55 55 H 1.09000 * 109.58573 * 246.15651 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5909 1.9865 0.8310 5 8 1.6831 2.0739 -1.2312 6 6 1.4921 3.4862 -1.1261 7 6 0.0215 3.7962 -0.7785 8 6 -0.2948 5.0832 -1.5815 9 6 0.4674 4.8539 -2.9102 10 6 1.7758 4.1587 -2.4808 11 6 3.5395 1.4451 0.1498 12 8 4.2396 1.8253 -0.7647 13 7 4.1026 1.0250 1.2999 14 6 3.2677 0.6568 2.4515 15 6 3.7360 1.4520 3.6742 16 6 5.2342 1.2218 3.8851 17 6 6.0057 1.7189 2.6604 18 1 5.7999 2.7781 2.5060 19 6 7.5056 1.5177 2.8855 20 7 7.9514 2.3666 3.9933 21 6 9.2654 2.3553 4.3786 22 1 9.9730 1.7205 3.8663 23 6 9.6878 3.1601 5.4279 24 7 10.9507 3.1489 5.7986 25 14 8.4640 4.2588 6.3136 26 1 7.8653 3.5161 7.4517 27 1 9.1616 5.4668 6.8230 28 1 7.3922 4.6670 5.3703 29 6 5.5632 0.9268 1.4261 30 1 -0.3634 0.5923 0.8398 31 1 -0.3633 0.4311 -0.9328 32 1 -0.3634 -1.0235 0.0930 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.1511 3.8959 -0.3606 36 1 -0.6262 2.9792 -1.0968 37 1 -0.0879 3.9762 0.2910 38 1 0.0865 5.9638 -1.0644 39 1 -1.3661 5.1731 -1.7612 40 1 0.6827 5.8057 -3.3957 41 1 -0.1079 4.2079 -3.5734 42 1 2.5719 4.8953 -2.3725 43 1 2.0596 3.4079 -3.2181 44 1 2.2256 0.8947 2.2381 45 1 3.3680 -0.4104 2.6492 46 1 3.5510 2.5137 3.5105 47 1 3.1887 1.1191 4.5562 48 1 5.4214 0.1571 4.0247 49 1 5.5650 1.7674 4.7688 50 1 7.6997 0.4728 3.1277 51 1 8.0485 1.7877 1.9797 52 1 7.3159 2.9371 4.4532 53 1 11.2459 3.7115 6.5316 54 1 6.0356 1.3427 0.5363 55 1 5.8506 -0.1184 1.5403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266811408.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:35 Heat of formation + Delta-G solvation = -110.422923 kcal Electronic energy + Delta-G solvation = -31081.529816 eV Core-core repulsion = 27116.923833 eV Total energy + Delta-G solvation = -3964.605983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.68726 -39.98461 -38.79818 -37.14654 -36.81004 -34.82347 -33.91369 -33.05940 -32.11164 -29.67386 -29.18458 -28.24685 -27.20935 -26.06434 -24.20696 -23.34365 -22.73679 -21.76451 -21.41689 -21.27361 -20.18268 -19.70627 -18.58989 -18.02971 -17.04121 -16.87536 -16.65122 -16.12013 -15.97487 -15.84515 -15.53203 -15.43673 -15.14688 -14.92871 -14.81964 -14.65235 -14.29143 -14.12590 -13.91446 -13.77366 -13.62864 -13.50009 -13.19072 -12.89172 -12.85049 -12.84379 -12.67689 -12.25370 -12.12960 -12.09536 -12.04390 -11.97701 -11.86417 -11.84810 -11.75621 -11.59126 -11.55181 -11.48481 -11.41188 -11.23310 -10.99913 -10.21884 -9.70351 -9.33319 -8.05783 -5.39853 1.33724 1.38357 1.45543 1.48014 1.82556 2.45275 2.62161 3.25016 3.35531 3.53577 3.58035 3.64531 3.71852 3.82943 3.88696 3.89643 3.97912 3.99057 4.18447 4.23047 4.26484 4.36359 4.38742 4.49671 4.50501 4.53507 4.56668 4.64405 4.68521 4.75052 4.77383 4.78400 4.84714 4.88714 4.90683 4.94247 5.01225 5.06493 5.12298 5.13665 5.17469 5.18411 5.23812 5.25518 5.30549 5.42103 5.43555 5.46836 5.47785 5.71916 6.11353 6.18090 6.38439 7.03989 7.09289 7.79324 7.99732 9.15888 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.002574 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.312910 B =10876.926396 C =11582.281427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.108 0.892 5 O -0.363 6.363 6 C 0.079 3.921 7 C -0.140 4.140 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.125 4.125 11 C 0.481 3.519 12 O -0.579 6.579 13 N -0.604 5.604 14 C 0.099 3.901 15 C -0.130 4.130 16 C -0.113 4.113 17 C -0.096 4.096 18 H 0.055 0.945 19 C 0.161 3.839 20 N -0.754 5.754 21 C -0.237 4.237 22 H 0.054 0.946 23 C -0.065 4.065 24 N -0.984 5.984 25 Si 0.957 3.043 26 H -0.270 1.270 27 H -0.295 1.295 28 H -0.256 1.256 29 C 0.125 3.875 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.106 0.894 48 H 0.076 0.924 49 H 0.052 0.948 50 H 0.035 0.965 51 H 0.014 0.986 52 H 0.366 0.634 53 H 0.259 0.741 54 H 0.066 0.934 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.449 -4.049 -11.154 35.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.020 3.980 4 H 0.125 0.875 5 O -0.280 6.280 6 C 0.022 3.978 7 C -0.178 4.178 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.163 4.163 11 C 0.270 3.730 12 O -0.458 6.458 13 N -0.338 5.338 14 C -0.022 4.022 15 C -0.168 4.168 16 C -0.150 4.150 17 C -0.116 4.116 18 H 0.074 0.926 19 C 0.034 3.966 20 N -0.400 5.400 21 C -0.368 4.368 22 H 0.073 0.927 23 C -0.256 4.256 24 N -0.634 5.634 25 Si 0.784 3.216 26 H -0.196 1.196 27 H -0.222 1.222 28 H -0.181 1.181 29 C 0.001 3.999 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.129 0.871 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.124 0.876 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.032 0.968 52 H 0.200 0.800 53 H 0.068 0.932 54 H 0.084 0.916 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -32.912 -4.029 -11.853 35.212 hybrid contribution 0.988 1.051 0.696 1.602 sum -31.924 -2.978 -11.158 33.948 Atomic orbital electron populations 1.21702 0.92691 1.03023 1.02591 1.21711 0.98573 0.91146 1.03952 1.22280 0.88300 0.98054 0.89386 0.87482 1.88040 1.88168 1.20938 1.30898 1.22978 0.96667 0.80464 0.97738 1.22915 0.94730 0.99114 1.01013 1.22465 1.01086 0.97036 0.95238 1.22333 0.94802 1.00478 0.98004 1.22193 0.98966 0.99027 0.96125 1.22187 0.92839 0.76285 0.81707 1.90687 1.65222 1.48351 1.41520 1.48268 1.06858 1.65287 1.13367 1.22235 0.95146 1.00899 0.83955 1.21947 0.95166 1.00665 0.99020 1.21544 0.95302 1.02018 0.96179 1.21529 0.94180 0.99641 0.96272 0.92621 1.20702 0.92706 0.93921 0.89229 1.42661 1.06398 1.51366 1.39622 1.19039 0.85908 1.19805 1.12089 0.92750 1.25547 0.97939 1.01956 1.00165 1.69893 1.16557 1.44839 1.32119 0.85376 0.78818 0.78383 0.79015 1.19578 1.22175 1.18126 1.21395 0.80373 1.00712 0.97383 0.91090 0.92953 0.90926 0.92156 0.87901 0.93658 0.89846 0.90293 0.91187 0.89636 0.90690 0.91010 0.91958 0.92048 0.87087 0.88531 0.92317 0.87571 0.90534 0.92872 0.94729 0.96840 0.80011 0.93239 0.91585 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.76 71.98 0.70 -0.54 16 2 C -0.12 -1.48 5.25 30.59 0.16 -1.32 16 3 C 0.08 1.46 1.49 29.85 0.04 1.50 16 4 H 0.11 1.37 6.81 -2.38 -0.02 1.36 16 5 O -0.36 -8.09 8.76 -130.03 -1.14 -9.23 16 6 C 0.08 1.55 3.14 31.32 0.10 1.65 16 7 C -0.14 -1.79 6.54 31.69 0.21 -1.58 16 8 C -0.12 -1.37 6.91 31.91 0.22 -1.15 16 9 C -0.12 -1.64 6.83 31.67 0.22 -1.43 16 10 C -0.13 -2.50 6.61 31.32 0.21 -2.30 16 11 C 0.48 12.44 6.98 87.66 0.61 13.06 16 12 O -0.58 -21.04 15.93 15.92 0.25 -20.79 16 13 N -0.60 -13.22 2.97 -818.90 -2.43 -15.66 16 14 C 0.10 1.28 4.91 86.36 0.42 1.71 16 15 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 16 C -0.11 -2.72 5.06 30.62 0.15 -2.56 16 17 C -0.10 -2.88 2.37 -10.71 -0.03 -2.91 16 18 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 19 C 0.16 6.29 5.65 86.38 0.49 6.78 16 20 N -0.75 -36.06 5.12 -343.44 -1.76 -37.81 16 21 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 22 H 0.05 3.50 8.06 -2.91 -0.02 3.48 16 23 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 24 N -0.98 -63.99 13.97 21.65 0.30 -63.69 16 25 Si 0.96 45.76 27.74 68.60 1.90 47.66 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.26 -11.19 6.52 99.48 0.65 -10.54 16 29 C 0.12 3.35 5.73 86.36 0.49 3.84 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.59 7.99 -2.39 -0.02 0.58 16 32 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 0.90 6.00 -2.39 -0.01 0.89 16 35 H 0.05 1.00 7.84 -2.39 -0.02 0.98 16 36 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.43 7.95 -2.39 -0.02 1.41 16 44 H 0.11 0.84 5.07 -2.39 -0.01 0.82 16 45 H 0.10 0.91 8.13 -2.39 -0.02 0.89 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.05 1.50 7.16 -2.39 -0.02 1.49 16 50 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.37 16.57 4.72 -92.71 -0.44 16.14 16 53 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 54 H 0.07 2.15 7.00 -2.39 -0.02 2.13 16 55 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -78.76 417.89 3.01 -75.75 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.35 Total: 27.33 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 5.54 Total: -3.57 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -3.89 Total: -117.16 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.89 Total: -30.02 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.90 Total: 47.66 kcal Total: -78.76 3.01 -75.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811408.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.672 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds