Wall clock time and date at job start Wed Apr 1 2020 00:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47145 * 2 1 4 4 H 1.09004 * 109.46910 * 56.83221 * 3 2 1 5 5 O 1.42899 * 109.46900 * 296.83908 * 3 2 1 6 6 C 1.42905 * 114.00196 * 89.99747 * 5 3 2 7 7 C 1.54889 * 110.48474 * 93.24205 * 6 5 3 8 8 C 1.55232 * 102.58795 * 156.67959 * 7 6 5 9 9 C 1.54261 * 104.23159 * 322.08060 * 8 7 6 10 10 C 1.53873 * 106.59781 * 23.61399 * 9 8 7 11 11 C 1.50694 * 109.47099 * 176.83917 * 3 2 1 12 12 O 1.21280 * 119.99947 * 108.30645 * 11 3 2 13 13 N 1.34777 * 120.00021 * 288.30018 * 11 3 2 14 14 C 1.46929 * 120.63106 * 5.10512 * 13 11 3 15 15 C 1.53191 * 108.77511 * 126.36875 * 14 13 11 16 16 C 1.53042 * 109.31172 * 54.63605 * 15 14 13 17 17 C 1.53035 * 109.53679 * 298.63226 * 16 15 14 18 18 H 1.08999 * 109.50110 * 301.38307 * 17 16 15 19 19 C 1.53003 * 109.49533 * 181.31574 * 17 16 15 20 20 N 1.46502 * 109.47093 * 65.00596 * 19 17 16 21 21 C 1.36935 * 119.99993 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00062 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99866 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99954 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99976 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46704 * 90.00431 * 25 23 21 27 27 H 1.48495 * 109.46886 * 210.00196 * 25 23 21 28 28 H 1.48500 * 109.46955 * 330.00592 * 25 23 21 29 29 C 1.46926 * 120.63062 * 184.82535 * 13 11 3 30 30 H 1.09003 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47367 * 299.99960 * 1 2 3 32 32 H 1.08996 * 109.46787 * 60.00156 * 1 2 3 33 33 H 1.08995 * 109.47133 * 239.99755 * 2 1 3 34 34 H 1.09005 * 109.47001 * 119.99969 * 2 1 3 35 35 H 1.09001 * 110.43320 * 330.70383 * 6 5 3 36 36 H 1.09003 * 110.75415 * 275.07238 * 7 6 5 37 37 H 1.09000 * 110.75717 * 38.43705 * 7 6 5 38 38 H 1.09004 * 110.46945 * 203.39614 * 8 7 6 39 39 H 1.09000 * 110.47543 * 80.77408 * 8 7 6 40 40 H 1.09000 * 110.03446 * 264.33041 * 9 8 7 41 41 H 1.09007 * 110.03541 * 142.89829 * 9 8 7 42 42 H 1.09004 * 110.03025 * 240.71224 * 10 9 8 43 43 H 1.08999 * 110.07465 * 119.30398 * 10 9 8 44 44 H 1.08999 * 109.58615 * 246.16048 * 14 13 11 45 45 H 1.09001 * 109.58154 * 6.57862 * 14 13 11 46 46 H 1.08999 * 109.49738 * 174.58848 * 15 14 13 47 47 H 1.09002 * 109.49516 * 294.64957 * 15 14 13 48 48 H 1.08991 * 109.46039 * 58.65750 * 16 15 14 49 49 H 1.09002 * 109.45815 * 178.61535 * 16 15 14 50 50 H 1.09003 * 109.47211 * 185.00177 * 19 17 16 51 51 H 1.09000 * 109.47392 * 305.00231 * 19 17 16 52 52 H 0.97002 * 119.99501 * 359.97438 * 20 19 17 53 53 H 0.96997 * 120.00162 * 179.97438 * 24 23 21 54 54 H 1.09001 * 109.58923 * 353.42209 * 29 13 11 55 55 H 1.09001 * 109.58608 * 113.84348 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6311 1.9724 0.8603 5 8 1.6253 2.0943 -1.2022 6 6 0.3584 2.7477 -1.1018 7 6 0.5449 4.2348 -0.7110 8 6 -0.7630 4.8883 -1.2327 9 6 -1.0462 4.1604 -2.5630 10 6 -0.3332 2.7994 -2.4797 11 6 3.5450 1.4432 0.0783 12 8 4.2025 1.7550 -0.8918 13 7 4.1601 1.0975 1.2266 14 6 3.3834 0.6108 2.3749 15 6 3.9591 -0.7358 2.8245 16 6 5.4565 -0.5796 3.0994 17 6 6.1709 -0.1536 1.8148 18 1 6.0002 -0.8998 1.0389 19 6 7.6722 -0.0295 2.0826 20 7 8.2202 -1.3478 2.4114 21 6 9.5538 -1.4848 2.6906 22 1 10.2017 -0.6210 2.6679 23 6 10.0728 -2.7338 3.0027 24 7 9.2833 -3.7865 3.0297 25 14 11.8922 -2.9208 3.3828 26 1 12.1145 -2.7394 4.8399 27 1 12.3458 -4.2755 2.9777 28 1 12.6623 -1.8960 2.6332 29 6 5.6209 1.1942 1.3518 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 -0.2756 2.2390 -0.3755 36 1 0.6288 4.3424 0.3705 37 1 1.4153 4.6594 -1.2111 38 1 -0.6140 5.9542 -1.4053 39 1 -1.5782 4.7254 -0.5277 40 1 -0.6496 4.7392 -3.3971 41 1 -2.1191 4.0129 -2.6870 42 1 0.4094 2.7177 -3.2735 43 1 -1.0594 1.9908 -2.5635 44 1 3.4511 1.3285 3.1924 45 1 2.3409 0.4835 2.0832 46 1 3.4543 -1.0618 3.7339 47 1 3.8081 -1.4764 2.0391 48 1 5.6075 0.1788 3.8675 49 1 5.8637 -1.5305 3.4431 50 1 8.1690 0.3589 1.1935 51 1 7.8374 0.6512 2.9177 52 1 7.6383 -2.1237 2.4313 53 1 9.6460 -4.6594 3.2474 54 1 6.0542 1.4518 0.3854 55 1 5.8748 1.9605 2.0843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266811409.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:39 Heat of formation + Delta-G solvation = -106.463856 kcal Electronic energy + Delta-G solvation = -30807.666327 eV Core-core repulsion = 26843.232022 eV Total energy + Delta-G solvation = -3964.434305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.29 seconds Orbital eigenvalues (eV) -41.68042 -40.05525 -38.80540 -37.20666 -36.67360 -34.73298 -33.76798 -32.97758 -31.72889 -29.83192 -29.43876 -27.90740 -27.05356 -26.09324 -24.50981 -23.20300 -22.89305 -21.65120 -21.46851 -21.22112 -20.13444 -19.22590 -18.53628 -17.95058 -17.06936 -16.74624 -16.50740 -16.38333 -16.03021 -15.78604 -15.56809 -15.31900 -15.23482 -15.07594 -14.64994 -14.50562 -14.30827 -14.03108 -13.76967 -13.63017 -13.47941 -13.30116 -13.19569 -13.02953 -12.90109 -12.78661 -12.75337 -12.25371 -12.17803 -12.12749 -12.06545 -12.02002 -11.94267 -11.82923 -11.71278 -11.54973 -11.39161 -11.33603 -11.32209 -10.94030 -10.76619 -10.33667 -9.69575 -9.01364 -7.96724 -5.25503 1.45778 1.47933 1.47940 1.56441 1.68736 2.54737 2.78166 3.36132 3.37945 3.62603 3.68118 3.74631 3.76757 3.81148 3.89443 3.93495 4.00676 4.03703 4.21821 4.26594 4.33042 4.39089 4.40414 4.46755 4.50957 4.54480 4.58169 4.66396 4.67105 4.73326 4.76205 4.78641 4.83142 4.87872 4.91646 4.95010 5.03873 5.07769 5.12513 5.16937 5.20048 5.20590 5.24383 5.28456 5.36157 5.40468 5.44197 5.46389 5.48640 5.50823 6.18120 6.25498 6.40755 7.09311 7.31889 8.06815 8.31456 9.26782 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.002065 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.230517 B =13554.564043 C =13905.902775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.083 3.917 4 H 0.115 0.885 5 O -0.377 6.377 6 C 0.068 3.932 7 C -0.153 4.153 8 C -0.118 4.118 9 C -0.121 4.121 10 C -0.124 4.124 11 C 0.507 3.493 12 O -0.578 6.578 13 N -0.603 5.603 14 C 0.095 3.905 15 C -0.129 4.129 16 C -0.107 4.107 17 C -0.093 4.093 18 H 0.048 0.952 19 C 0.158 3.842 20 N -0.741 5.741 21 C -0.247 4.247 22 H 0.074 0.926 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.975 3.025 26 H -0.284 1.284 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.127 3.873 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.010 0.990 51 H 0.031 0.969 52 H 0.375 0.625 53 H 0.252 0.748 54 H 0.066 0.934 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.388 15.113 -2.393 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.022 3.978 4 H 0.132 0.868 5 O -0.295 6.295 6 C 0.011 3.989 7 C -0.191 4.191 8 C -0.156 4.156 9 C -0.159 4.159 10 C -0.162 4.162 11 C 0.295 3.705 12 O -0.457 6.457 13 N -0.337 5.337 14 C -0.026 4.026 15 C -0.167 4.167 16 C -0.144 4.144 17 C -0.113 4.113 18 H 0.066 0.934 19 C 0.031 3.969 20 N -0.384 5.384 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.804 3.196 26 H -0.210 1.210 27 H -0.221 1.221 28 H -0.197 1.197 29 C 0.004 3.996 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.134 0.866 46 H 0.123 0.877 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.028 0.972 51 H 0.049 0.951 52 H 0.207 0.793 53 H 0.060 0.940 54 H 0.085 0.915 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.779 15.369 -3.075 32.770 hybrid contribution 1.560 -0.820 -0.033 1.763 sum -27.219 14.549 -3.108 31.019 Atomic orbital electron populations 1.21940 0.92639 1.03539 1.02990 1.22203 0.98945 0.93774 1.03635 1.21999 0.89385 0.96112 0.90309 0.86778 1.88082 1.37802 1.70531 1.33122 1.23582 0.84021 0.92286 0.99023 1.23109 0.98761 0.95818 1.01414 1.22331 0.96578 0.99677 0.96978 1.22095 1.01048 0.94666 0.98054 1.22211 0.99039 0.99001 0.95959 1.21164 0.91163 0.76217 0.81932 1.90685 1.68025 1.49769 1.37186 1.48144 1.07245 1.64600 1.13680 1.22309 0.96293 0.95976 0.88010 1.21922 0.94948 0.97017 1.02793 1.21453 0.95456 1.01550 0.95968 1.21391 0.94402 0.97008 0.98469 0.93364 1.20722 0.91844 0.87556 0.96749 1.42516 1.06620 1.05408 1.83876 1.19638 0.86593 0.93783 1.37867 0.90799 1.25581 1.02317 0.95426 1.03477 1.69813 1.35908 0.98994 1.57184 0.85117 0.79947 0.76650 0.77900 1.21040 1.22147 1.19714 1.21326 0.79679 0.96664 1.01925 0.91038 0.90159 0.92135 0.92849 0.88438 0.88134 0.90436 0.92977 0.91068 0.89679 0.92083 0.89806 0.92752 0.89862 0.88619 0.86624 0.87732 0.92451 0.90842 0.93435 0.97207 0.95135 0.79283 0.93960 0.91536 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.54 71.98 0.61 -0.91 16 2 C -0.15 -2.36 5.21 30.60 0.16 -2.20 16 3 C 0.08 1.63 1.85 29.85 0.06 1.69 16 4 H 0.11 1.46 7.22 -2.38 -0.02 1.44 16 5 O -0.38 -8.94 9.16 -130.21 -1.19 -10.13 16 6 C 0.07 1.04 1.95 31.67 0.06 1.10 16 7 C -0.15 -2.23 6.65 32.01 0.21 -2.02 16 8 C -0.12 -1.19 6.84 31.79 0.22 -0.97 16 9 C -0.12 -1.31 6.80 31.32 0.21 -1.09 16 10 C -0.12 -1.79 6.45 31.32 0.20 -1.58 16 11 C 0.51 14.44 7.05 87.66 0.62 15.06 16 12 O -0.58 -22.83 15.96 15.74 0.25 -22.58 16 13 N -0.60 -14.76 2.98 -819.73 -2.44 -17.20 16 14 C 0.10 1.48 5.58 86.36 0.48 1.96 16 15 C -0.13 -2.51 6.04 30.67 0.19 -2.32 16 16 C -0.11 -3.02 5.06 30.62 0.15 -2.87 16 17 C -0.09 -3.12 2.36 -10.86 -0.03 -3.14 16 18 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 19 C 0.16 6.59 5.66 86.38 0.49 7.08 16 20 N -0.74 -38.77 5.32 -343.44 -1.83 -40.60 16 21 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 24 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 25 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 26 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 29 C 0.13 3.72 5.70 86.22 0.49 4.21 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.43 7.93 -2.39 -0.02 0.41 16 32 H 0.06 0.67 5.69 -2.39 -0.01 0.65 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.29 5.56 -2.38 -0.01 1.28 16 35 H 0.10 1.02 5.36 -2.39 -0.01 1.01 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.05 1.04 8.07 -2.38 -0.02 1.02 16 43 H 0.08 0.93 7.95 -2.39 -0.02 0.91 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.12 1.15 4.17 -2.39 -0.01 1.14 16 46 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.05 1.67 7.15 -2.39 -0.02 1.65 16 50 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 51 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.37 20.69 6.85 -92.71 -0.63 20.05 16 53 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 54 H 0.07 2.31 7.00 -2.39 -0.02 2.29 16 55 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -77.48 413.93 2.76 -74.72 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.22 Total: 29.83 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.44 Total: -3.32 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.99 Total: -117.51 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.94 Total: -32.71 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -77.48 2.76 -74.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266811409.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.743 kcal (2) G-P(sol) polarization free energy of solvation -77.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds