Wall clock time and date at job start Wed Apr 1 2020 00:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 H 1.09003 * 109.47277 * 183.86516 * 3 2 1 5 5 O 1.42904 * 109.47215 * 63.86193 * 3 2 1 6 6 C 1.42897 * 113.99624 * 154.07170 * 5 3 2 7 7 C 1.52995 * 109.47512 * 274.61874 * 6 5 3 8 8 C 1.52995 * 109.47789 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47406 * 59.99805 * 8 7 6 10 10 C 1.53005 * 109.46879 * 300.00825 * 9 8 7 11 11 C 1.52992 * 109.47425 * 59.99320 * 10 9 8 12 12 C 1.50701 * 109.46894 * 303.86292 * 3 2 1 13 13 O 1.21284 * 119.99679 * 103.34919 * 12 3 2 14 14 N 1.34774 * 120.00124 * 283.34431 * 12 3 2 15 15 C 1.47747 * 125.82214 * 6.45801 * 14 12 3 16 16 C 1.54906 * 104.84161 * 155.82544 * 15 14 12 17 17 C 1.55152 * 101.58285 * 37.08985 * 16 15 14 18 18 C 1.47023 * 125.65102 * 186.53901 * 14 12 3 19 19 H 1.09007 * 109.88221 * 300.60388 * 18 14 12 20 20 C 1.53004 * 109.87903 * 61.60893 * 18 14 12 21 21 N 1.46497 * 109.47216 * 284.71646 * 20 18 14 22 22 C 1.36938 * 119.99654 * 172.51338 * 21 20 18 23 23 H 1.08003 * 119.99959 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99848 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99940 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99847 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.46811 * 269.99490 * 26 24 22 28 28 H 1.48499 * 109.47268 * 29.99082 * 26 24 22 29 29 H 1.48500 * 109.47230 * 149.99936 * 26 24 22 30 30 H 1.09007 * 109.47208 * 305.24199 * 1 2 3 31 31 H 1.08997 * 109.47259 * 65.24039 * 1 2 3 32 32 H 1.09002 * 109.47273 * 185.24537 * 1 2 3 33 33 H 1.09000 * 109.46833 * 239.99541 * 2 1 3 34 34 H 1.09001 * 109.46880 * 119.99898 * 2 1 3 35 35 H 1.08996 * 109.47668 * 34.62098 * 6 5 3 36 36 H 1.09003 * 109.47351 * 300.00362 * 7 6 5 37 37 H 1.09002 * 109.46858 * 60.00157 * 7 6 5 38 38 H 1.09002 * 109.46803 * 299.99866 * 8 7 6 39 39 H 1.09002 * 109.47857 * 180.02562 * 8 7 6 40 40 H 1.08999 * 109.47558 * 180.02562 * 9 8 7 41 41 H 1.08996 * 109.46726 * 60.00013 * 9 8 7 42 42 H 1.09002 * 109.46779 * 299.99602 * 10 9 8 43 43 H 1.09002 * 109.46931 * 179.97438 * 10 9 8 44 44 H 1.09002 * 109.47507 * 179.97438 * 11 10 9 45 45 H 1.09002 * 109.46912 * 60.00363 * 11 10 9 46 46 H 1.08993 * 110.29390 * 37.01427 * 15 14 12 47 47 H 1.09005 * 110.42982 * 274.70304 * 15 14 12 48 48 H 1.08993 * 111.00303 * 279.01240 * 16 15 14 49 49 H 1.09007 * 111.03544 * 155.18222 * 16 15 14 50 50 H 1.09002 * 110.71756 * 206.12920 * 17 16 15 51 51 H 1.09004 * 110.72144 * 82.86417 * 17 16 15 52 52 H 1.09003 * 109.46676 * 164.71607 * 20 18 14 53 53 H 1.09001 * 109.46527 * 44.72133 * 20 18 14 54 54 H 0.96994 * 120.00302 * 352.52078 * 21 20 18 55 55 H 0.97001 * 119.99406 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4433 -0.0693 5 8 1.6392 2.0894 1.2095 6 6 2.4908 3.1679 1.6015 7 6 3.6711 2.6193 2.4057 8 6 4.5827 3.7740 2.8260 9 6 3.7922 4.7600 3.6885 10 6 2.6118 5.3085 2.8842 11 6 1.7004 4.1539 2.4640 12 6 1.4610 2.1799 -1.1798 13 8 0.5466 2.9601 -1.0180 14 7 1.9593 1.9726 -2.4148 15 6 2.9728 0.9614 -2.7797 16 6 2.7460 0.6992 -4.2895 17 6 2.3859 2.1188 -4.8015 18 6 1.5856 2.7176 -3.6259 19 1 0.5169 2.6104 -3.8121 20 6 1.9380 4.1968 -3.4562 21 7 0.9635 4.8320 -2.5658 22 6 1.1603 6.1193 -2.1423 23 1 2.0338 6.6664 -2.4651 24 6 0.2372 6.7211 -1.2981 25 7 -0.8275 6.0545 -0.9051 26 14 0.5053 8.4773 -0.7210 27 1 1.2842 8.4693 0.5435 28 1 1.2542 9.2305 -1.7588 29 1 -0.8090 9.1282 -0.4885 30 1 -0.3634 0.5930 0.8394 31 1 -0.3633 0.4304 -0.9332 32 1 -0.3634 -1.0234 0.0940 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.8626 3.6787 0.7133 36 1 3.2995 2.1085 3.2941 37 1 4.2341 1.9166 1.7914 38 1 4.9544 4.2851 1.9379 39 1 5.4238 3.3831 3.3986 40 1 4.4415 5.5828 3.9875 41 1 3.4205 4.2488 4.5765 42 1 2.9836 5.8196 1.9961 43 1 2.0484 6.0106 3.4988 44 1 0.8592 4.5447 1.8914 45 1 1.3286 3.6427 3.3521 46 1 2.8169 0.0465 -2.2082 47 1 3.9768 1.3499 -2.6087 48 1 1.9195 0.0061 -4.4458 49 1 3.6561 0.3319 -4.7639 50 1 1.7688 2.0603 -5.6981 51 1 3.2879 2.7011 -4.9903 52 1 1.9167 4.6892 -4.4285 53 1 2.9355 4.2855 -3.0258 54 1 0.1789 4.3408 -2.2761 55 1 -1.4723 6.4749 -0.3149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270051440.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:01 Heat of formation + Delta-G solvation = -98.699047 kcal Electronic energy + Delta-G solvation = -33169.474395 eV Core-core repulsion = 29205.376797 eV Total energy + Delta-G solvation = -3964.097597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.45951 -40.05170 -38.50279 -37.23134 -36.21904 -34.59424 -33.23195 -32.33239 -31.75950 -30.52179 -30.32069 -27.90161 -26.68241 -24.78643 -23.85000 -23.59462 -23.28003 -22.38852 -21.76370 -20.79272 -19.97132 -19.13202 -17.95865 -17.77211 -17.53095 -16.76640 -16.50038 -16.07555 -15.85588 -15.35692 -15.26277 -15.17630 -15.03977 -14.82450 -14.63394 -14.29491 -14.13095 -13.99530 -13.76417 -13.72163 -13.51057 -13.21395 -13.16662 -13.11609 -12.91243 -12.71747 -12.66865 -12.32305 -12.25735 -12.22012 -12.09025 -11.99030 -11.88946 -11.73558 -11.71130 -11.56438 -11.47571 -11.45292 -11.30409 -10.92514 -10.77429 -9.97597 -9.42498 -8.81659 -7.81304 -5.09751 1.35689 1.39080 1.46973 1.89678 2.09927 2.54998 2.65121 3.45494 3.53436 3.69417 3.71546 3.73892 3.81799 3.84890 3.95471 3.98682 4.08940 4.19157 4.22810 4.24470 4.33141 4.37318 4.40988 4.45853 4.46783 4.51791 4.55700 4.63770 4.67800 4.79160 4.80964 4.83956 4.90613 4.92015 4.99199 5.00611 5.04845 5.07585 5.13563 5.15158 5.17067 5.18458 5.19804 5.25469 5.37446 5.40739 5.42612 5.45622 5.46095 5.64356 6.18872 6.33781 6.78609 7.39118 7.58476 8.32005 8.58702 9.39045 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007453 B = 0.006443 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3755.763108 B = 4344.566736 C = 6731.505542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C 0.083 3.917 4 H 0.094 0.906 5 O -0.367 6.367 6 C 0.100 3.900 7 C -0.128 4.128 8 C -0.115 4.115 9 C -0.111 4.111 10 C -0.115 4.115 11 C -0.107 4.107 12 C 0.480 3.520 13 O -0.519 6.519 14 N -0.621 5.621 15 C 0.085 3.915 16 C -0.116 4.116 17 C -0.115 4.115 18 C 0.131 3.869 19 H 0.040 0.960 20 C 0.144 3.856 21 N -0.735 5.735 22 C -0.247 4.247 23 H 0.060 0.940 24 C -0.066 4.066 25 N -0.945 5.945 26 Si 0.957 3.043 27 H -0.289 1.289 28 H -0.269 1.269 29 H -0.295 1.295 30 H 0.036 0.964 31 H 0.024 0.976 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.020 0.980 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.020 0.980 53 H 0.009 0.991 54 H 0.387 0.613 55 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -18.049 1.660 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C 0.022 3.978 4 H 0.112 0.888 5 O -0.285 6.285 6 C 0.043 3.957 7 C -0.165 4.165 8 C -0.152 4.152 9 C -0.149 4.149 10 C -0.153 4.153 11 C -0.145 4.145 12 C 0.268 3.732 13 O -0.392 6.392 14 N -0.360 5.360 15 C -0.036 4.036 16 C -0.154 4.154 17 C -0.153 4.153 18 C 0.026 3.974 19 H 0.058 0.942 20 C 0.016 3.984 21 N -0.384 5.384 22 C -0.379 4.379 23 H 0.078 0.922 24 C -0.260 4.260 25 N -0.595 5.595 26 Si 0.786 3.214 27 H -0.217 1.217 28 H -0.194 1.194 29 H -0.221 1.221 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.038 0.962 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.136 0.864 50 H 0.111 0.889 51 H 0.104 0.896 52 H 0.037 0.963 53 H 0.027 0.973 54 H 0.227 0.773 55 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 14.654 -17.516 1.988 22.924 hybrid contribution -0.857 1.913 0.064 2.097 sum 13.798 -15.603 2.052 20.929 Atomic orbital electron populations 1.21635 0.96279 1.01923 1.00363 1.21675 0.96178 0.90800 1.05341 1.22198 0.99045 0.93940 0.82627 0.88815 1.87963 1.54132 1.47772 1.38601 1.22029 0.90953 0.87088 0.95662 1.22004 0.95158 0.98698 1.00667 1.21514 0.98208 0.95688 0.99786 1.21545 0.95733 0.99351 0.98247 1.21477 0.97510 0.96738 0.99588 1.21402 0.97802 0.96166 0.99083 1.21746 0.83937 0.83162 0.84395 1.90833 1.29037 1.35353 1.83934 1.48768 1.43264 1.37386 1.06572 1.22813 0.91517 0.91556 0.97714 1.22770 1.04054 0.95538 0.92998 1.22612 1.00242 0.97072 0.95385 1.21769 0.98442 0.90721 0.86439 0.94214 1.21196 0.92105 0.92267 0.92852 1.43025 1.26562 1.12701 1.56122 1.19466 1.04651 0.91081 1.22722 0.92164 1.25441 0.97596 1.01533 1.01420 1.69973 1.13215 1.37214 1.39080 0.85395 0.76475 0.81182 0.78348 1.21676 1.19426 1.22127 0.94522 0.95652 0.89972 0.87433 0.87850 0.96159 0.89955 0.90402 0.93197 0.88553 0.90462 0.90313 0.94558 0.91752 0.96154 0.90494 0.88345 0.90668 0.90017 0.86446 0.88872 0.89631 0.96256 0.97324 0.77333 0.95033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 9.44 71.98 0.68 -3.45 16 2 C -0.10 -2.31 5.82 30.59 0.18 -2.13 16 3 C 0.08 2.59 2.00 29.85 0.06 2.65 16 4 H 0.09 2.40 7.02 -2.39 -0.02 2.38 16 5 O -0.37 -13.76 8.65 -130.49 -1.13 -14.89 16 6 C 0.10 3.63 2.41 30.59 0.07 3.70 16 7 C -0.13 -3.13 5.45 30.59 0.17 -2.97 16 8 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 9 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 10 C -0.12 -3.94 5.92 30.59 0.18 -3.76 16 11 C -0.11 -4.21 5.57 30.59 0.17 -4.04 16 12 C 0.48 19.35 5.23 87.66 0.46 19.81 16 13 O -0.52 -28.38 13.16 15.45 0.20 -28.17 16 14 N -0.62 -20.35 3.08 -787.24 -2.42 -22.77 16 15 C 0.09 1.63 6.49 86.79 0.56 2.19 16 16 C -0.12 -1.70 7.08 31.98 0.23 -1.47 16 17 C -0.11 -2.50 6.44 31.78 0.20 -2.30 16 18 C 0.13 4.63 3.02 45.34 0.14 4.76 16 19 H 0.04 1.65 8.11 -2.38 -0.02 1.63 16 20 C 0.14 6.53 5.62 86.38 0.49 7.01 16 21 N -0.74 -43.18 4.42 -343.44 -1.52 -44.70 16 22 C -0.25 -15.60 9.99 84.03 0.84 -14.76 16 23 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 24 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 25 N -0.95 -65.18 13.06 21.65 0.28 -64.89 16 26 Si 0.96 51.03 29.55 68.60 2.03 53.06 16 27 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 28 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 29 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 30 H 0.04 1.27 7.65 -2.38 -0.02 1.25 16 31 H 0.02 0.85 7.31 -2.39 -0.02 0.83 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.11 1.72 5.69 -2.39 -0.01 1.71 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.60 7.53 -2.39 -0.02 1.59 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.10 1.37 5.42 -2.39 -0.01 1.36 16 47 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 50 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.09 1.74 7.85 -2.39 -0.02 1.73 16 52 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 53 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 54 H 0.39 24.97 5.00 -92.71 -0.46 24.51 16 55 H 0.24 16.21 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -89.28 414.89 3.08 -86.20 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.38 Total: 39.56 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.25 Total: -3.39 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -3.65 Total: -132.36 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.93 Total: -43.06 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.03 Total: 53.06 kcal Total: -89.28 3.08 -86.20 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270051440.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.496 kcal (2) G-P(sol) polarization free energy of solvation -89.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds