Wall clock time and date at job start Tue Mar 31 2020 23:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 H 1.08997 * 109.47070 * 304.99757 * 3 2 1 5 5 C 1.53001 * 109.47099 * 65.00251 * 3 2 1 6 6 C 1.53002 * 109.46899 * 184.99916 * 3 2 1 7 7 C 1.50702 * 109.47069 * 174.99780 * 6 3 2 8 8 O 1.21281 * 119.99819 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99936 * 179.97438 * 7 6 3 10 10 C 1.46500 * 119.99806 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47378 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.32877 * 304.21361 * 11 10 9 13 13 C 1.54603 * 110.37459 * 181.85015 * 11 10 9 14 14 C 1.53987 * 103.89385 * 217.27072 * 13 11 10 15 15 C 1.53979 * 104.57190 * 0.14723 * 14 13 11 16 16 O 1.44476 * 110.37283 * 66.45145 * 11 10 9 17 17 C 1.52404 * 110.27926 * 241.63213 * 14 13 11 18 18 C 1.53285 * 109.44702 * 297.22804 * 17 14 13 19 19 N 1.46921 * 108.85409 * 306.25149 * 18 17 14 20 20 C 1.36931 * 120.60044 * 234.26179 * 19 18 17 21 21 H 1.08000 * 120.00277 * 152.45859 * 20 19 18 22 22 C 1.38812 * 119.99728 * 332.46506 * 20 19 18 23 23 N 1.31623 * 120.00215 * 159.33213 * 22 20 19 24 24 Si 1.86795 * 120.00423 * 339.33409 * 22 20 19 25 25 H 1.48496 * 109.47309 * 93.23140 * 24 22 20 26 26 H 1.48499 * 109.47333 * 213.23534 * 24 22 20 27 27 H 1.48501 * 109.46899 * 333.23528 * 24 22 20 28 28 C 1.47228 * 118.61001 * 54.13107 * 19 18 17 29 29 C 1.52402 * 110.27531 * 118.65704 * 14 13 11 30 30 H 1.08998 * 109.47313 * 60.00067 * 1 2 3 31 31 H 1.09004 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47134 * 299.99977 * 1 2 3 33 33 H 1.09000 * 109.47134 * 240.00023 * 2 1 3 34 34 H 1.09005 * 109.47073 * 120.00230 * 2 1 3 35 35 H 1.08997 * 109.47065 * 59.99987 * 5 3 2 36 36 H 1.08995 * 109.46893 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47174 * 300.00035 * 5 3 2 38 38 H 1.09004 * 109.47153 * 55.00358 * 6 3 2 39 39 H 1.09000 * 109.47469 * 295.00131 * 6 3 2 40 40 H 0.96988 * 120.00214 * 0.02562 * 9 7 6 41 41 H 1.09004 * 109.47367 * 60.00145 * 10 9 7 42 42 H 1.09000 * 109.47194 * 300.00411 * 10 9 7 43 43 H 1.09004 * 110.54695 * 98.66686 * 13 11 10 44 44 H 1.09000 * 110.54693 * 335.87326 * 13 11 10 45 45 H 1.08999 * 110.39070 * 142.42258 * 15 14 13 46 46 H 1.09004 * 110.39012 * 264.69793 * 15 14 13 47 47 H 1.09000 * 109.47404 * 177.24102 * 17 14 13 48 48 H 1.09004 * 109.48418 * 57.22965 * 17 14 13 49 49 H 1.09003 * 109.58913 * 66.10314 * 18 17 14 50 50 H 1.09005 * 109.59299 * 186.40345 * 18 17 14 51 51 H 0.96993 * 120.00673 * 179.97438 * 23 22 20 52 52 H 1.08997 * 109.53806 * 186.09225 * 28 19 18 53 53 H 1.09001 * 109.69779 * 65.77063 * 28 19 18 54 54 H 1.09010 * 109.47775 * 182.76013 * 29 14 13 55 55 H 1.08995 * 109.48072 * 302.77286 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2493 8 8 3.2661 3.7826 -0.2375 9 7 5.3762 3.1107 -0.3719 10 6 5.8547 4.4902 -0.4915 11 6 7.3794 4.4921 -0.6173 12 1 7.8296 3.9676 0.2256 13 6 7.9110 5.9416 -0.6983 14 6 9.0765 5.8525 -1.7007 15 6 9.1184 4.3702 -2.1154 16 8 7.7820 3.8807 -1.8629 17 6 10.3846 6.2490 -1.0266 18 6 10.3017 7.7104 -0.5716 19 7 9.9217 8.5443 -1.7199 20 6 10.6865 9.6204 -2.0834 21 1 10.6978 9.9525 -3.1110 22 6 11.4473 10.2845 -1.1310 23 7 12.4678 11.0270 -1.5047 24 14 11.0229 10.1244 0.6811 25 1 11.8147 9.0197 1.2792 26 1 11.3419 11.3961 1.3784 27 1 9.5746 9.8302 0.8261 28 6 8.7044 8.1966 -2.4716 29 6 8.7980 6.7319 -2.9139 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0699 1.5875 2.1491 36 1 1.9990 3.1540 1.3075 37 1 0.5490 2.1252 1.3970 38 1 3.8570 0.8800 -1.0113 39 1 4.0030 0.9835 0.7596 40 1 6.0087 2.3755 -0.3810 41 1 5.5622 5.0543 0.3942 42 1 5.4168 4.9512 -1.3768 43 1 8.2694 6.2726 0.2765 44 1 7.1369 6.6127 -1.0704 45 1 9.3628 4.2786 -3.1737 46 1 9.8443 3.8269 -1.5103 47 1 11.2067 6.1344 -1.7330 48 1 10.5567 5.6082 -0.1617 49 1 9.5523 7.8066 0.2141 50 1 11.2722 8.0307 -0.1924 51 1 12.9993 11.4913 -0.8393 52 1 8.6216 8.8387 -3.3485 53 1 7.8291 8.3313 -1.8361 54 1 9.6069 6.6215 -3.6362 55 1 7.8569 6.4301 -3.3733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270272981.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:59 Heat of formation + Delta-G solvation = -105.151904 kcal Electronic energy + Delta-G solvation = -30433.215942 eV Core-core repulsion = 26468.838527 eV Total energy + Delta-G solvation = -3964.377414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.56521 -40.75869 -38.52848 -37.33888 -35.81610 -35.02387 -33.14514 -32.25991 -32.02751 -31.25511 -28.87937 -28.41906 -26.63497 -25.40365 -24.67854 -24.37685 -22.73544 -22.41147 -21.53790 -20.65424 -19.91368 -18.59197 -18.02791 -17.65876 -17.21288 -16.71720 -16.61082 -16.44852 -16.03438 -15.83958 -15.74365 -15.29869 -15.11561 -15.05543 -14.78603 -14.60050 -14.31866 -14.10692 -14.06253 -13.68510 -13.47782 -13.34723 -13.21648 -12.83266 -12.79015 -12.69155 -12.62762 -12.43069 -12.27091 -12.17526 -12.10788 -12.04681 -11.74810 -11.66136 -11.57908 -11.51518 -11.37999 -11.17635 -11.14929 -10.72731 -10.65566 -10.57334 -10.06360 -8.90895 -8.17030 -5.47949 1.27584 1.40542 1.49277 1.70739 2.22127 2.40701 2.86176 3.06096 3.34336 3.49040 3.70315 3.79359 3.83217 3.88266 3.98197 4.01368 4.12280 4.16543 4.29094 4.34653 4.38007 4.47067 4.50949 4.55827 4.64041 4.65470 4.68030 4.72824 4.74417 4.75470 4.79779 4.80729 4.85420 4.89169 4.93323 4.98088 5.01914 5.15820 5.16784 5.19692 5.23241 5.23739 5.25196 5.26784 5.32729 5.42774 5.51647 5.56204 5.61794 5.86050 5.87840 6.12259 6.60411 6.92363 7.32313 7.62990 8.03895 9.03109 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.002048 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.749369 B =13671.803154 C =14100.402221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.054 0.946 5 C -0.152 4.152 6 C -0.131 4.131 7 C 0.505 3.495 8 O -0.583 6.583 9 N -0.718 5.718 10 C 0.131 3.869 11 C 0.076 3.924 12 H 0.096 0.904 13 C -0.140 4.140 14 C -0.077 4.077 15 C 0.061 3.939 16 O -0.378 6.378 17 C -0.112 4.112 18 C 0.120 3.880 19 N -0.618 5.618 20 C -0.247 4.247 21 H 0.048 0.952 22 C -0.037 4.037 23 N -0.958 5.958 24 Si 0.948 3.052 25 H -0.271 1.271 26 H -0.314 1.314 27 H -0.261 1.261 28 C 0.142 3.858 29 C -0.109 4.109 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.416 0.584 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.035 0.965 50 H 0.046 0.954 51 H 0.261 0.739 52 H 0.048 0.952 53 H 0.034 0.966 54 H 0.054 0.946 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.422 -27.664 5.386 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.073 0.927 5 C -0.209 4.209 6 C -0.170 4.170 7 C 0.293 3.707 8 O -0.463 6.463 9 N -0.370 5.370 10 C 0.006 3.994 11 C 0.018 3.982 12 H 0.113 0.887 13 C -0.178 4.178 14 C -0.077 4.077 15 C -0.015 4.015 16 O -0.297 6.297 17 C -0.151 4.151 18 C -0.005 4.005 19 N -0.343 5.343 20 C -0.377 4.377 21 H 0.066 0.934 22 C -0.231 4.231 23 N -0.605 5.605 24 Si 0.777 3.223 25 H -0.198 1.198 26 H -0.243 1.243 27 H -0.186 1.186 28 C 0.018 3.982 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.252 0.748 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.053 0.947 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.067 0.933 53 H 0.052 0.948 54 H 0.073 0.927 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.003 -27.056 5.287 32.926 hybrid contribution 0.741 1.020 0.590 1.392 sum -17.262 -26.036 5.877 31.787 Atomic orbital electron populations 1.21830 0.95978 1.01917 1.01629 1.21558 0.95990 0.94718 1.02932 1.20897 0.93350 0.96853 0.98440 0.92732 1.21949 1.01297 1.00714 0.96935 1.21812 0.97145 0.91771 1.06277 1.21387 0.81783 0.92780 0.74731 1.90674 1.55717 1.48329 1.51618 1.45923 1.07830 1.09082 1.74177 1.21309 0.92102 0.84114 1.01852 1.23204 0.93453 0.93056 0.88459 0.88670 1.23003 0.97724 0.96741 1.00305 1.21305 0.94977 0.95959 0.95502 1.23502 0.84451 0.91186 1.02374 1.89117 1.31462 1.69023 1.40129 1.21857 0.96719 0.95922 1.00621 1.21437 0.97802 0.91561 0.89673 1.44496 1.26061 1.29521 1.34190 1.18855 1.19652 1.05964 0.93231 0.93448 1.25912 0.97452 0.97669 1.02073 1.69971 1.18827 1.36580 1.35101 0.85886 0.79280 0.75511 0.81629 1.19778 1.24291 1.18589 1.21164 0.87406 0.94861 0.94784 1.21810 1.01447 0.94845 0.96639 0.93439 0.91883 0.92770 0.91013 0.90777 0.92140 0.93584 0.92660 0.86796 0.86497 0.74751 0.90437 0.92584 0.89888 0.90779 0.88654 0.90393 0.92432 0.89563 0.94719 0.93607 0.93021 0.93337 0.94796 0.92682 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.67 71.98 0.70 -0.89 16 2 C -0.11 -1.06 5.40 30.59 0.17 -0.90 16 3 C -0.08 -1.06 2.04 -10.79 -0.02 -1.08 16 4 H 0.05 1.01 7.96 -2.39 -0.02 0.99 16 5 C -0.15 -2.44 8.69 71.98 0.63 -1.82 16 6 C -0.13 -1.46 5.17 29.85 0.15 -1.30 16 7 C 0.50 9.68 7.55 87.66 0.66 10.34 16 8 O -0.58 -16.51 13.97 -3.03 -0.04 -16.56 16 9 N -0.72 -11.63 5.54 -463.07 -2.56 -14.20 16 10 C 0.13 2.58 5.28 86.38 0.46 3.03 16 11 C 0.08 1.39 3.34 31.14 0.10 1.50 16 12 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 13 C -0.14 -3.23 4.97 31.47 0.16 -3.08 16 14 C -0.08 -1.97 0.68 -51.91 -0.04 -2.00 16 15 C 0.06 1.25 6.73 72.31 0.49 1.74 16 16 O -0.38 -7.84 11.33 -148.98 -1.69 -9.53 16 17 C -0.11 -3.35 4.63 30.49 0.14 -3.21 16 18 C 0.12 4.79 3.89 86.39 0.34 5.12 16 19 N -0.62 -28.43 2.77 -697.98 -1.93 -30.36 16 20 C -0.25 -14.06 10.05 84.03 0.84 -13.21 16 21 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 22 C -0.04 -2.14 5.23 84.86 0.44 -1.70 16 23 N -0.96 -60.51 13.97 21.65 0.30 -60.21 16 24 Si 0.95 46.32 24.36 68.60 1.67 47.99 16 25 H -0.27 -12.33 6.63 99.48 0.66 -11.67 16 26 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 27 H -0.26 -12.20 6.64 99.48 0.66 -11.54 16 28 C 0.14 5.39 6.21 86.34 0.54 5.93 16 29 C -0.11 -3.24 4.63 30.49 0.14 -3.10 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.05 0.58 6.56 -2.39 -0.02 0.57 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.02 5.95 -2.39 -0.01 1.01 16 37 H 0.05 0.85 6.56 -2.39 -0.02 0.83 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.42 4.49 8.47 -92.72 -0.79 3.70 16 41 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.93 6.59 -2.39 -0.02 1.91 16 44 H 0.07 1.86 6.33 -2.39 -0.02 1.85 16 45 H 0.10 1.90 7.85 -2.39 -0.02 1.88 16 46 H 0.08 1.34 7.83 -2.38 -0.02 1.32 16 47 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.09 2.06 8.13 -2.39 -0.02 2.04 16 49 H 0.04 1.33 5.83 -2.39 -0.01 1.32 16 50 H 0.05 2.07 4.46 -2.38 -0.01 2.06 16 51 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 52 H 0.05 1.93 7.94 -2.39 -0.02 1.91 16 53 H 0.03 1.23 6.87 -2.39 -0.02 1.21 16 54 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 55 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -72.71 406.00 1.62 -71.09 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.02 Total: 16.39 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.89 Total: -4.62 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -4.20 Total: -104.77 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.73 Total: -26.08 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.67 Total: 47.99 kcal Total: -72.71 1.62 -71.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270272981.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.064 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds