Wall clock time and date at job start Tue Mar 31 2020 23:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47004 * 2 1 4 4 H 1.09001 * 109.47234 * 55.00058 * 3 2 1 5 5 C 1.52996 * 109.47080 * 294.99715 * 3 2 1 6 6 C 1.53007 * 109.46836 * 174.99805 * 3 2 1 7 7 C 1.50705 * 109.46767 * 184.99767 * 6 3 2 8 8 O 1.21283 * 119.99978 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99854 * 180.02562 * 7 6 3 10 10 C 1.46499 * 119.99929 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46842 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.32929 * 305.69966 * 11 10 9 13 13 C 1.54609 * 110.36374 * 183.46196 * 11 10 9 14 14 C 1.53996 * 103.87904 * 217.27787 * 13 11 10 15 15 C 1.53961 * 104.58187 * 0.14677 * 14 13 11 16 16 O 1.44466 * 110.36792 * 67.94693 * 11 10 9 17 17 C 1.52408 * 110.24911 * 241.59310 * 14 13 11 18 18 C 1.53296 * 109.40325 * 297.41888 * 17 14 13 19 19 N 1.46922 * 108.72371 * 306.31712 * 18 17 14 20 20 C 1.36937 * 120.57891 * 234.18386 * 19 18 17 21 21 H 1.08001 * 120.00004 * 27.87530 * 20 19 18 22 22 C 1.38813 * 119.99950 * 207.88060 * 20 19 18 23 23 N 1.31612 * 120.00207 * 17.44059 * 22 20 19 24 24 Si 1.86800 * 119.99630 * 197.43475 * 22 20 19 25 25 H 1.48496 * 109.47205 * 60.00289 * 24 22 20 26 26 H 1.48499 * 109.46796 * 179.97438 * 24 22 20 27 27 H 1.48492 * 109.47386 * 299.99825 * 24 22 20 28 28 C 1.46934 * 118.84642 * 54.15559 * 19 18 17 29 29 C 1.52410 * 110.24658 * 118.68160 * 14 13 11 30 30 H 1.08997 * 109.47373 * 300.00290 * 1 2 3 31 31 H 1.09003 * 109.46692 * 60.00263 * 1 2 3 32 32 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47373 * 239.99710 * 2 1 3 34 34 H 1.09007 * 109.47166 * 119.99642 * 2 1 3 35 35 H 1.09001 * 109.47113 * 59.99786 * 5 3 2 36 36 H 1.08996 * 109.47449 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47367 * 300.00261 * 5 3 2 38 38 H 1.08996 * 109.46849 * 304.99814 * 6 3 2 39 39 H 1.08999 * 109.46756 * 65.00135 * 6 3 2 40 40 H 0.96998 * 120.00158 * 0.02562 * 9 7 6 41 41 H 1.08999 * 109.47167 * 300.00090 * 10 9 7 42 42 H 1.09002 * 109.46823 * 60.00142 * 10 9 7 43 43 H 1.09004 * 110.54482 * 335.87527 * 13 11 10 44 44 H 1.08997 * 110.54061 * 98.53716 * 13 11 10 45 45 H 1.08997 * 110.39045 * 142.42113 * 15 14 13 46 46 H 1.09004 * 110.39120 * 264.69375 * 15 14 13 47 47 H 1.09005 * 109.48035 * 57.40213 * 17 14 13 48 48 H 1.08999 * 109.48431 * 177.44145 * 17 14 13 49 49 H 1.08997 * 109.59322 * 186.54585 * 18 17 14 50 50 H 1.08999 * 109.71721 * 66.16620 * 18 17 14 51 51 H 0.96994 * 120.00562 * 180.02562 * 23 22 20 52 52 H 1.08997 * 109.59751 * 186.06580 * 28 19 18 53 53 H 1.09001 * 109.71955 * 65.68139 * 28 19 18 54 54 H 1.08992 * 109.49045 * 182.55215 * 29 14 13 55 55 H 1.09002 * 109.47933 * 302.58928 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 6 4.0570 2.8634 0.2492 8 8 3.2659 3.7827 0.2382 9 7 5.3761 3.1109 0.3719 10 6 5.8546 4.4904 0.4913 11 6 7.3794 4.4922 0.6173 12 1 7.6922 3.8493 1.4400 13 6 7.8999 5.9322 0.8317 14 6 9.2141 5.9732 0.0299 15 6 9.3404 4.5649 -0.5795 16 8 7.9866 4.0575 -0.6195 17 6 10.3896 6.2550 0.9581 18 6 10.2124 7.6360 1.5995 19 7 10.0105 8.6281 0.5348 20 6 10.8069 9.7394 0.4581 21 1 11.8165 9.7077 0.8403 22 6 10.3165 10.9068 -0.1108 23 7 9.0194 11.0710 -0.2614 24 14 11.4976 12.2447 -0.6624 25 1 12.4149 11.7002 -1.6953 26 1 10.7284 13.3796 -1.2329 27 1 12.2884 12.7178 0.5021 28 6 8.9397 8.4068 -0.4467 29 6 9.1261 7.0205 -1.0738 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.5489 2.1252 -1.3970 36 1 1.9989 3.1540 -1.3076 37 1 2.0699 1.5875 -2.1492 38 1 3.8570 0.8801 1.0114 39 1 4.0029 0.9836 -0.7596 40 1 6.0088 2.3757 0.3803 41 1 5.5620 5.0544 -0.3943 42 1 5.4167 4.9514 1.3767 43 1 7.1888 6.6585 0.4380 44 1 8.0884 6.1172 1.8891 45 1 9.7549 4.6225 -1.5859 46 1 9.9646 3.9325 0.0519 47 1 10.4278 5.4941 1.7377 48 1 11.3172 6.2363 0.3859 49 1 11.1044 7.8903 2.1719 50 1 9.3450 7.6263 2.2595 51 1 8.6766 11.8865 -0.6593 52 1 8.9924 9.1696 -1.2235 53 1 7.9703 8.4564 0.0493 54 1 10.0440 7.0077 -1.6613 55 1 8.2775 6.7968 -1.7204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270272983.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:04 Heat of formation + Delta-G solvation = -108.624980 kcal Electronic energy + Delta-G solvation = -30365.258573 eV Core-core repulsion = 26400.730555 eV Total energy + Delta-G solvation = -3964.528018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.49552 -40.74274 -38.34048 -37.33004 -35.81414 -35.01414 -32.72506 -32.23944 -31.64597 -31.22147 -28.83262 -28.31387 -26.63718 -25.55224 -24.66647 -23.93801 -22.67578 -22.29299 -21.53771 -20.65457 -19.76434 -18.53349 -18.01387 -17.55978 -16.96988 -16.84423 -16.50468 -16.22892 -16.05604 -15.70740 -15.57756 -15.35444 -15.11300 -14.82122 -14.75211 -14.61928 -14.18330 -13.97319 -13.77711 -13.52443 -13.33164 -13.20387 -12.99426 -12.87889 -12.79033 -12.70104 -12.56229 -12.40453 -12.21053 -12.17454 -12.13257 -11.91534 -11.84222 -11.74886 -11.53735 -11.51579 -11.37558 -11.10516 -11.03216 -10.68156 -10.60849 -10.48748 -10.07716 -8.65755 -7.87125 -5.31896 1.45110 1.47691 1.54234 1.70420 2.21824 2.50775 2.87569 3.26398 3.54071 3.70975 3.75196 3.80382 3.87475 3.92007 4.01575 4.03709 4.13218 4.24759 4.31156 4.43427 4.47698 4.50693 4.57304 4.64059 4.68480 4.71780 4.73070 4.74882 4.76807 4.83846 4.85402 4.87420 4.92100 4.93517 5.02501 5.06229 5.15669 5.19355 5.24444 5.25220 5.28947 5.32944 5.34410 5.42125 5.43566 5.52002 5.56128 5.61308 5.64568 5.78118 5.89993 6.39217 6.60704 7.15360 7.32695 7.88547 8.39321 9.18437 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.001989 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.680899 B =14075.232139 C =14745.313487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.076 4.076 4 H 0.057 0.943 5 C -0.153 4.153 6 C -0.129 4.129 7 C 0.503 3.497 8 O -0.585 6.585 9 N -0.716 5.716 10 C 0.130 3.870 11 C 0.078 3.922 12 H 0.102 0.898 13 C -0.135 4.135 14 C -0.076 4.076 15 C 0.061 3.939 16 O -0.382 6.382 17 C -0.107 4.107 18 C 0.139 3.861 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.067 0.933 22 C -0.053 4.053 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.279 1.279 26 H -0.297 1.297 27 H -0.274 1.274 28 C 0.180 3.820 29 C -0.113 4.113 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.058 0.942 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.417 0.583 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.017 0.983 51 H 0.248 0.752 52 H 0.046 0.954 53 H -0.004 1.004 54 H 0.051 0.949 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -26.956 1.927 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.095 4.095 4 H 0.075 0.925 5 C -0.210 4.210 6 C -0.169 4.169 7 C 0.292 3.708 8 O -0.465 6.465 9 N -0.369 5.369 10 C 0.006 3.994 11 C 0.021 3.979 12 H 0.120 0.880 13 C -0.174 4.174 14 C -0.076 4.076 15 C -0.015 4.015 16 O -0.301 6.301 17 C -0.146 4.146 18 C 0.014 3.986 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.085 0.915 22 C -0.248 4.248 23 N -0.582 5.582 24 Si 0.793 3.207 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.200 1.200 28 C 0.054 3.946 29 C -0.152 4.152 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.253 0.747 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.035 0.965 51 H 0.057 0.943 52 H 0.064 0.936 53 H 0.014 0.986 54 H 0.070 0.930 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.493 -26.288 1.703 27.678 hybrid contribution 0.638 1.669 -0.324 1.816 sum -7.855 -24.618 1.379 25.878 Atomic orbital electron populations 1.21831 0.95975 1.01942 1.01610 1.21554 0.95983 0.94557 1.03005 1.20904 0.93360 0.96957 0.98288 0.92483 1.21958 1.01316 1.00603 0.97155 1.21815 0.97119 0.91544 1.06385 1.21463 0.81774 0.92903 0.74702 1.90681 1.55811 1.48452 1.51551 1.45912 1.07806 1.08866 1.74282 1.21278 0.92338 0.84120 1.01676 1.23203 0.91499 0.95014 0.88226 0.88005 1.22936 0.96612 0.96307 1.01496 1.21298 0.95402 0.95406 0.95499 1.23550 0.83944 0.91862 1.02188 1.89125 1.25896 1.76091 1.39029 1.21827 0.96871 0.97322 0.98551 1.21128 0.98151 0.89285 0.90068 1.44268 1.37649 1.22270 1.28966 1.19497 0.93854 0.89426 1.36438 0.91535 1.25786 0.96764 0.99209 1.03041 1.70183 1.12425 1.27072 1.48501 0.85375 0.78329 0.78488 0.78486 1.20473 1.22316 1.19973 1.20549 0.88773 0.93558 0.91691 1.21926 1.00304 0.95958 0.97046 0.93327 0.92951 0.91794 0.90921 0.90687 0.92544 0.93921 0.92336 0.86157 0.86847 0.74650 0.93353 0.90566 0.92577 0.89572 0.89103 0.89666 0.89217 0.92233 0.92989 0.96499 0.94275 0.93584 0.98568 0.93012 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.67 71.98 0.70 -1.04 16 2 C -0.11 -1.17 5.40 30.60 0.17 -1.01 16 3 C -0.08 -1.18 2.04 -10.79 -0.02 -1.20 16 4 H 0.06 1.12 7.95 -2.39 -0.02 1.10 16 5 C -0.15 -2.88 8.69 71.98 0.63 -2.26 16 6 C -0.13 -1.65 5.18 29.85 0.15 -1.50 16 7 C 0.50 10.92 7.55 87.66 0.66 11.59 16 8 O -0.58 -18.36 13.97 -3.04 -0.04 -18.40 16 9 N -0.72 -13.56 5.55 -463.05 -2.57 -16.13 16 10 C 0.13 3.12 5.28 86.38 0.46 3.57 16 11 C 0.08 1.71 3.33 31.14 0.10 1.81 16 12 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 13 C -0.14 -3.79 4.96 31.48 0.16 -3.64 16 14 C -0.08 -2.21 0.69 -51.91 -0.04 -2.24 16 15 C 0.06 1.40 6.73 72.31 0.49 1.89 16 16 O -0.38 -9.27 11.35 -148.98 -1.69 -10.96 16 17 C -0.11 -3.13 4.64 30.50 0.14 -2.99 16 18 C 0.14 5.43 6.20 86.40 0.54 5.97 16 19 N -0.61 -30.14 2.98 -698.69 -2.09 -32.22 16 20 C -0.26 -14.41 9.58 84.03 0.80 -13.61 16 21 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 22 C -0.05 -2.98 4.90 84.86 0.42 -2.57 16 23 N -0.94 -56.43 11.19 21.65 0.24 -56.18 16 24 Si 0.96 45.37 29.59 68.60 2.03 47.40 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 C 0.18 8.75 5.01 86.40 0.43 9.18 16 29 C -0.11 -4.25 4.63 30.50 0.14 -4.11 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.63 6.56 -2.39 -0.02 0.62 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 0.99 6.56 -2.39 -0.02 0.98 16 36 H 0.04 1.09 5.95 -2.39 -0.01 1.08 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.42 5.33 8.47 -92.71 -0.79 4.54 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 1.90 6.32 -2.38 -0.02 1.88 16 44 H 0.09 2.32 6.59 -2.39 -0.02 2.30 16 45 H 0.09 2.09 7.85 -2.39 -0.02 2.08 16 46 H 0.09 1.53 7.83 -2.38 -0.02 1.51 16 47 H 0.09 2.00 8.12 -2.38 -0.02 1.98 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 50 H 0.02 0.67 6.85 -2.39 -0.02 0.66 16 51 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 52 H 0.05 2.59 6.02 -2.39 -0.01 2.58 16 53 H 0.00 -0.19 6.85 -2.39 -0.02 -0.21 16 54 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 55 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -71.47 412.33 1.87 -69.59 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.07 Total: 19.06 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.92 Total: -2.14 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -4.41 Total: -104.54 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -1.73 Total: -29.37 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.47 1.87 -69.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270272983.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.033 kcal (2) G-P(sol) polarization free energy of solvation -71.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds