Wall clock time and date at job start Tue Mar 31 2020 23:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46821 * 305.00289 * 3 2 1 5 5 C 1.52999 * 109.46948 * 185.00284 * 3 2 1 6 6 O 1.42894 * 109.47221 * 65.00248 * 3 2 1 7 7 C 1.42896 * 113.99977 * 210.00056 * 6 3 2 8 8 C 1.50704 * 109.47334 * 179.97438 * 7 6 3 9 9 O 1.21286 * 119.99579 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99987 * 179.97438 * 8 7 6 11 11 C 1.47548 * 118.63159 * 0.87193 * 10 8 7 12 12 C 1.53949 * 112.17107 * 137.84501 * 11 10 8 13 13 C 1.50885 * 110.15803 * 319.38704 * 12 11 10 14 14 C 1.52610 * 109.36407 * 91.86957 * 13 12 11 15 15 C 1.47087 * 114.27119 * 275.23702 * 14 13 12 16 16 C 1.54252 * 112.35916 * 301.68282 * 15 14 13 17 17 C 1.54397 * 104.94658 * 237.63207 * 16 15 14 18 18 N 1.48146 * 104.61795 * 23.87401 * 17 16 15 19 19 C 1.36940 * 127.83427 * 140.43085 * 18 17 16 20 20 H 1.07994 * 120.00141 * 344.36170 * 19 18 17 21 21 C 1.38814 * 119.99662 * 164.36015 * 19 18 17 22 22 N 1.31620 * 120.00121 * 350.59219 * 21 19 18 23 23 Si 1.86803 * 119.99963 * 170.59594 * 21 19 18 24 24 H 1.48509 * 109.46954 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47067 * 119.99668 * 23 21 19 26 26 H 1.48500 * 109.47210 * 240.00216 * 23 21 19 27 27 C 1.48155 * 104.32873 * 320.43207 * 18 17 16 28 28 C 1.44604 * 118.63226 * 180.89042 * 10 8 7 29 29 H 1.08997 * 109.47531 * 59.99479 * 1 2 3 30 30 H 1.09000 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46935 * 299.99646 * 1 2 3 32 32 H 1.09003 * 109.46459 * 239.99869 * 2 1 3 33 33 H 1.08997 * 109.47093 * 120.00212 * 2 1 3 34 34 H 1.08999 * 109.47159 * 60.00090 * 5 3 2 35 35 H 1.09000 * 109.46971 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47258 * 299.99929 * 5 3 2 37 37 H 1.09004 * 109.47649 * 60.00287 * 7 6 3 38 38 H 1.09001 * 109.47270 * 299.99756 * 7 6 3 39 39 H 1.09003 * 108.94182 * 17.15275 * 11 10 8 40 40 H 1.08999 * 108.88067 * 258.49155 * 11 10 8 41 41 H 1.08997 * 109.36127 * 199.18324 * 12 11 10 42 42 H 1.08988 * 109.24689 * 79.52557 * 12 11 10 43 43 H 1.09006 * 109.48584 * 331.90856 * 13 12 11 44 44 H 1.08994 * 109.49371 * 211.83655 * 13 12 11 45 45 H 1.08989 * 108.52530 * 153.99541 * 14 13 12 46 46 H 1.09001 * 108.40112 * 36.38680 * 14 13 12 47 47 H 1.09000 * 110.34638 * 356.50322 * 16 15 14 48 48 H 1.09001 * 110.34587 * 118.76906 * 16 15 14 49 49 H 1.09008 * 110.40338 * 142.65606 * 17 16 15 50 50 H 1.09000 * 110.41316 * 264.96577 * 17 16 15 51 51 H 0.97001 * 119.99949 * 180.02562 * 22 21 19 52 52 H 1.09004 * 110.40309 * 280.76534 * 27 18 17 53 53 H 1.08999 * 110.40868 * 158.33317 * 27 18 17 54 54 H 1.09001 * 109.46165 * 150.56536 * 28 10 8 55 55 H 1.09000 * 109.46638 * 30.58205 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1258 6 8 1.6621 2.0813 1.2210 7 6 1.4561 3.4902 1.1003 8 6 1.0628 4.0571 2.4401 9 8 0.9688 3.3265 3.4036 10 7 0.8167 5.3760 2.5678 11 6 0.9222 6.2339 1.3720 12 6 -0.2220 7.2607 1.2908 13 6 -1.5248 6.6211 1.7035 14 6 -1.7386 6.8287 3.2003 15 6 -1.0763 5.8275 4.0502 16 6 -1.5384 4.3904 3.7331 17 6 -2.0946 3.8474 5.0671 18 7 -2.4757 5.0568 5.8332 19 6 -3.5779 5.2363 6.6258 20 1 -4.4113 4.5533 6.5545 21 6 -3.6238 6.2963 7.5209 22 7 -2.5451 7.0168 7.7436 23 14 -5.2166 6.7002 8.4094 24 1 -6.2746 5.7478 7.9863 25 1 -5.0075 6.5893 9.8754 26 1 -5.6342 8.0848 8.0722 27 6 -1.3939 6.0279 5.5474 28 6 0.4606 5.8915 3.8711 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.8532 0.9569 -1.0572 35 1 3.9282 2.4719 -0.1263 36 1 3.9995 0.9052 0.7160 37 1 0.6619 3.6808 0.3784 38 1 2.3770 3.9643 0.7609 39 1 0.8971 5.6051 0.4820 40 1 1.8732 6.7657 1.4022 41 1 -0.3075 7.6263 0.2676 42 1 -0.0031 8.0959 1.9559 43 1 -1.4908 5.5535 1.4857 44 1 -2.3457 7.0792 1.1520 45 1 -2.8090 6.8023 3.4041 46 1 -1.3604 7.8152 3.4683 47 1 -2.3200 4.4026 2.9735 48 1 -0.6947 3.7858 3.4002 49 1 -2.9680 3.2203 4.8875 50 1 -1.3267 3.2850 5.5983 51 1 -2.5771 7.7573 8.3694 52 1 -0.5159 5.8084 6.1549 53 1 -1.7388 7.0457 5.7299 54 1 0.7934 6.9260 3.9558 55 1 0.9416 5.2908 4.6431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270512025.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:56 Heat of formation + Delta-G solvation = -66.427858 kcal Electronic energy + Delta-G solvation = -32322.362099 eV Core-core repulsion = 28359.663885 eV Total energy + Delta-G solvation = -3962.698214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.07082 -39.87582 -38.87055 -37.58123 -35.07965 -34.65949 -34.26183 -32.71995 -30.79201 -29.98928 -29.56074 -28.54491 -26.55645 -26.03291 -24.68954 -24.38606 -22.38437 -22.02639 -21.85148 -20.24265 -19.36824 -18.86479 -18.32002 -17.80349 -17.62252 -16.80852 -16.64576 -16.33887 -15.97806 -15.56872 -15.31044 -15.13218 -14.78764 -14.68654 -14.61783 -14.43834 -14.16693 -14.09747 -14.00466 -13.61444 -13.39093 -13.26544 -13.02273 -12.85299 -12.81970 -12.60351 -12.52995 -12.39424 -12.22767 -12.08448 -11.99141 -11.90996 -11.82011 -11.80763 -11.48100 -11.39452 -11.20281 -11.16086 -11.14432 -10.74905 -10.57653 -10.50841 -9.45923 -8.88120 -7.91307 -5.27541 1.42329 1.43809 1.54981 1.58416 1.83026 2.46748 2.91170 3.26986 3.54393 3.66869 3.72506 3.92271 3.94227 4.06790 4.09266 4.11823 4.12818 4.20756 4.24538 4.33254 4.39063 4.44340 4.47344 4.48291 4.54029 4.67174 4.71357 4.75355 4.76784 4.78682 4.86974 4.90787 5.01058 5.07558 5.09392 5.13626 5.17437 5.21451 5.25005 5.26210 5.34538 5.35597 5.39989 5.40978 5.44293 5.47248 5.51378 5.68196 5.74965 5.79130 6.19643 6.23252 6.48020 7.01557 7.24314 7.67473 8.49855 9.22182 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.003138 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.688032 B = 8920.626370 C = 9808.059990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.173 4.173 6 O -0.390 6.390 7 C 0.050 3.950 8 C 0.497 3.503 9 O -0.560 6.560 10 N -0.593 5.593 11 C 0.098 3.902 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.088 4.088 15 C -0.076 4.076 16 C -0.136 4.136 17 C 0.125 3.875 18 N -0.618 5.618 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.062 4.062 22 N -0.945 5.945 23 Si 0.981 3.019 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.180 3.820 28 C 0.139 3.861 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.106 0.894 49 H 0.037 0.963 50 H -0.002 1.002 51 H 0.250 0.750 52 H -0.014 1.014 53 H 0.055 0.945 54 H 0.089 0.911 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.169 -3.157 -26.446 29.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.103 0.897 5 C -0.231 4.231 6 O -0.309 6.309 7 C -0.029 4.029 8 C 0.287 3.713 9 O -0.440 6.440 10 N -0.326 5.326 11 C -0.022 4.022 12 C -0.164 4.164 13 C -0.145 4.145 14 C -0.126 4.126 15 C -0.079 4.079 16 C -0.173 4.173 17 C -0.001 4.001 18 N -0.342 5.342 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.255 4.255 22 N -0.593 5.593 23 Si 0.808 3.192 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.212 1.212 27 C 0.054 3.946 28 C 0.015 3.985 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.045 0.955 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.124 0.876 49 H 0.055 0.945 50 H 0.016 0.984 51 H 0.059 0.941 52 H 0.004 0.996 53 H 0.074 0.926 54 H 0.108 0.892 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.002 -3.488 -25.608 28.495 hybrid contribution -0.942 0.222 1.586 1.858 sum 11.060 -3.265 -24.022 26.647 Atomic orbital electron populations 1.21728 0.95859 1.01814 1.01537 1.21670 0.96215 0.94988 1.02946 1.22446 0.95134 0.94119 0.86262 0.89714 1.22293 0.95089 1.02852 1.02820 1.88067 1.89777 1.18986 1.34099 1.22427 1.03371 0.83615 0.93483 1.21048 0.76725 0.82306 0.91234 1.90674 1.51682 1.59457 1.42187 1.47785 1.67537 1.07265 1.09987 1.22418 1.00077 0.93783 0.85934 1.21778 0.92924 0.97743 1.03941 1.21033 0.98777 1.01270 0.93407 1.20263 0.98851 0.97620 0.95853 1.21036 0.95248 0.95606 0.95963 1.23189 1.01530 0.96699 0.95925 1.21706 0.95665 0.89792 0.92902 1.45281 1.24210 1.10454 1.54298 1.19395 0.93117 1.11196 1.13343 0.90970 1.25733 1.00783 0.99833 0.99178 1.70118 1.28178 1.22268 1.38759 0.84989 0.78881 0.77732 0.77559 1.19277 1.21763 1.21172 1.21373 0.88414 0.94432 0.90394 1.21365 0.93468 0.99315 0.84351 0.91566 0.92320 0.94662 0.88214 0.92892 0.89492 0.91767 0.93401 0.87666 0.87342 0.87374 0.89076 0.87197 0.91598 0.92295 0.90991 0.95466 0.92475 0.93137 0.87647 0.94481 0.98391 0.94103 0.99603 0.92639 0.89228 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.81 71.98 0.71 -1.91 16 2 C -0.12 -1.86 5.64 30.59 0.17 -1.68 16 3 C 0.08 1.16 2.72 30.59 0.08 1.24 16 4 H 0.08 0.84 7.79 -2.38 -0.02 0.82 16 5 C -0.17 -2.09 9.53 71.98 0.69 -1.41 16 6 O -0.39 -9.23 9.06 -129.94 -1.18 -10.40 16 7 C 0.05 0.91 4.56 71.24 0.32 1.23 16 8 C 0.50 14.06 6.29 87.66 0.55 14.61 16 9 O -0.56 -22.62 13.57 15.99 0.22 -22.41 16 10 N -0.59 -14.57 2.04 -818.24 -1.67 -16.24 16 11 C 0.10 1.30 5.95 86.50 0.51 1.82 16 12 C -0.13 -1.81 5.71 30.23 0.17 -1.64 16 13 C -0.11 -2.41 5.35 29.78 0.16 -2.25 16 14 C -0.09 -2.97 3.85 28.63 0.11 -2.86 16 15 C -0.08 -2.99 0.67 -52.50 -0.04 -3.03 16 16 C -0.14 -5.65 5.19 31.49 0.16 -5.49 16 17 C 0.12 6.38 7.23 86.54 0.63 7.01 16 18 N -0.62 -35.62 3.38 -688.17 -2.33 -37.94 16 19 C -0.24 -14.72 10.35 84.03 0.87 -13.86 16 20 H 0.07 4.28 7.85 -2.91 -0.02 4.26 16 21 C -0.06 -3.69 5.40 84.86 0.46 -3.24 16 22 N -0.95 -59.19 10.88 21.65 0.24 -58.95 16 23 Si 0.98 47.76 29.56 68.60 2.03 49.79 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 C 0.18 9.51 5.00 86.52 0.43 9.94 16 28 C 0.14 4.63 4.36 87.37 0.38 5.01 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.03 0.82 7.82 -2.38 -0.02 0.80 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 1.29 7.32 -2.38 -0.02 1.27 16 38 H 0.11 1.22 7.78 -2.39 -0.02 1.20 16 39 H 0.11 0.77 5.82 -2.39 -0.01 0.75 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 1.06 7.31 -2.39 -0.02 1.04 16 43 H 0.06 1.40 6.06 -2.38 -0.01 1.39 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.85 7.37 -2.39 -0.02 1.84 16 47 H 0.05 1.99 6.97 -2.39 -0.02 1.98 16 48 H 0.11 4.33 2.71 -24.17 -0.07 4.26 16 49 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 50 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 51 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 52 H -0.01 -0.81 7.48 -2.38 -0.02 -0.83 16 53 H 0.06 3.20 6.27 -2.39 -0.01 3.19 16 54 H 0.09 2.61 8.08 -2.39 -0.02 2.59 16 55 H 0.05 2.00 6.90 -2.39 -0.02 1.99 16 Total: -1.00 -82.65 404.83 4.48 -78.18 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.79 Total: 14.46 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.38 Total: 3.51 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -3.76 Total: -113.13 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.96 Total: -32.81 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -82.65 4.48 -78.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270512025.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.752 kcal (2) G-P(sol) polarization free energy of solvation -82.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds