Wall clock time and date at job start Tue Mar 31 2020 23:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 H 1.08991 * 109.47520 * 305.00025 * 3 2 1 5 5 C 1.52999 * 109.46812 * 65.00552 * 3 2 1 6 6 C 1.53005 * 109.47025 * 185.00067 * 3 2 1 7 7 N 1.46901 * 109.47061 * 176.24681 * 6 3 2 8 8 C 1.44345 * 110.99868 * 170.88855 * 7 6 3 9 9 C 1.53821 * 112.17974 * 215.86791 * 8 7 6 10 10 O 1.44194 * 112.87825 * 318.42201 * 9 8 7 11 11 C 1.40380 * 117.19315 * 317.88650 * 10 9 8 12 12 C 1.54324 * 108.82705 * 92.89085 * 11 10 9 13 13 C 1.54532 * 108.39918 * 158.48470 * 12 11 10 14 14 C 1.51306 * 104.22607 * 269.92959 * 13 12 11 15 15 O 1.21284 * 124.94438 * 164.09769 * 14 13 12 16 16 N 1.34431 * 110.10593 * 344.22081 * 14 13 12 17 17 C 1.46499 * 124.34767 * 179.51059 * 16 14 13 18 18 C 1.52999 * 109.47642 * 269.70753 * 17 16 14 19 19 C 1.50701 * 109.47131 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00118 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99723 * 180.27452 * 19 18 17 22 22 N 1.31516 * 120.00170 * 359.71926 * 21 19 18 23 23 Si 1.86798 * 120.00060 * 179.72457 * 21 19 18 24 24 H 1.48506 * 109.47174 * 59.99541 * 23 21 19 25 25 H 1.48503 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47035 * 299.99793 * 23 21 19 27 27 C 1.46807 * 111.30262 * 359.25095 * 16 14 13 28 28 C 1.46536 * 111.81947 * 283.17138 * 12 11 10 29 29 H 1.09004 * 109.47348 * 59.99458 * 1 2 3 30 30 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46954 * 299.99661 * 1 2 3 32 32 H 1.09002 * 109.46954 * 240.00339 * 2 1 3 33 33 H 1.08994 * 109.47459 * 120.00453 * 2 1 3 34 34 H 1.08998 * 109.47699 * 64.32544 * 5 3 2 35 35 H 1.09003 * 109.47033 * 184.32857 * 5 3 2 36 36 H 1.09000 * 109.47275 * 304.32204 * 5 3 2 37 37 H 1.09001 * 109.47179 * 56.24453 * 6 3 2 38 38 H 1.09000 * 109.47105 * 296.24240 * 6 3 2 39 39 H 1.08990 * 108.93659 * 336.56021 * 8 7 6 40 40 H 1.09001 * 108.93730 * 95.26100 * 8 7 6 41 41 H 1.09000 * 108.80443 * 79.30260 * 9 8 7 42 42 H 1.09003 * 108.79796 * 197.55202 * 9 8 7 43 43 H 1.09007 * 109.57962 * 333.08570 * 11 10 9 44 44 H 1.09002 * 109.57894 * 212.69582 * 11 10 9 45 45 H 1.09001 * 110.49129 * 28.80680 * 13 12 11 46 46 H 1.09000 * 110.49175 * 151.45397 * 13 12 11 47 47 H 1.08996 * 109.47249 * 149.70116 * 17 16 14 48 48 H 1.09005 * 109.47142 * 29.70811 * 17 16 14 49 49 H 1.08996 * 109.47319 * 59.99405 * 18 17 16 50 50 H 1.08999 * 109.46653 * 299.99829 * 18 17 16 51 51 H 0.96998 * 120.00244 * 180.02562 * 22 21 19 52 52 H 1.09007 * 110.24585 * 136.08932 * 27 16 14 53 53 H 1.08993 * 110.25022 * 258.00242 * 27 16 14 54 54 H 1.08997 * 108.90403 * 181.44992 * 28 12 11 55 55 H 1.09007 * 108.90466 * 300.05935 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1264 1.3074 6 6 3.5648 1.4443 -0.1257 7 7 4.0470 2.8290 -0.2161 8 6 5.4864 2.8826 -0.1225 9 6 5.9728 4.1270 0.6397 10 8 5.2404 5.3194 0.2917 11 6 4.9480 5.5191 -1.0667 12 6 3.5540 4.9294 -1.3680 13 6 3.0075 5.5993 -2.6489 14 6 2.2542 6.8100 -2.1428 15 8 1.9072 7.7487 -2.8280 16 7 2.0277 6.6948 -0.8227 17 6 1.3308 7.6973 -0.0131 18 6 2.3456 8.6957 0.5473 19 6 1.6286 9.7265 1.3807 20 1 0.5563 9.6749 1.4984 21 6 2.3408 10.7390 1.9877 22 7 3.6466 10.8021 1.8440 23 14 1.4512 12.0212 3.0143 24 1 0.7473 11.3537 4.1387 25 1 2.4357 12.9931 3.5544 26 1 0.4635 12.7359 2.1665 27 6 2.5632 5.4327 -0.2978 28 6 3.5912 3.4680 -1.4693 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.1315 1.6342 2.1438 35 1 1.9309 3.1751 1.2756 36 1 0.5549 2.0574 1.4343 37 1 3.8560 0.8988 -1.0234 38 1 4.0021 0.9638 0.7494 39 1 5.8407 1.9906 0.3939 40 1 5.9060 2.8989 -1.1284 41 1 5.8650 3.9482 1.7095 42 1 7.0280 4.2853 0.4168 43 1 5.6971 5.0172 -1.6792 44 1 4.9485 6.5865 -1.2873 45 1 3.8271 5.9016 -3.3008 46 1 2.3307 4.9248 -3.1732 47 1 0.8137 7.2041 0.8099 48 1 0.6061 8.2252 -0.6331 49 1 2.8626 9.1890 -0.2757 50 1 3.0702 8.1679 1.1673 51 1 4.1478 11.5142 2.2713 52 1 3.0822 5.6062 0.6449 53 1 1.7587 4.7109 -0.1576 54 1 2.5914 3.1050 -1.7076 55 1 4.2698 3.1869 -2.2748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272422505.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:08 Heat of formation + Delta-G solvation = -104.605943 kcal Electronic energy + Delta-G solvation = -32158.944130 eV Core-core repulsion = 28194.590390 eV Total energy + Delta-G solvation = -3964.353740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.14748 -40.14882 -38.34716 -37.39717 -36.23798 -35.82102 -34.46668 -31.79944 -31.16185 -29.76950 -28.79279 -27.52409 -27.46380 -26.59895 -25.63649 -23.66374 -23.20453 -21.71783 -21.10052 -20.56297 -20.05633 -18.68140 -17.88917 -17.37151 -17.26992 -16.92336 -16.56881 -16.42329 -16.02961 -15.91356 -15.62176 -15.42459 -15.16624 -14.89090 -14.61947 -14.50054 -14.28440 -14.08706 -13.96351 -13.84106 -13.37587 -13.21170 -13.15439 -13.02061 -12.82295 -12.65619 -12.62256 -12.55579 -12.34481 -12.09286 -12.06416 -12.03948 -11.90519 -11.78960 -11.43119 -11.38432 -11.34359 -11.30404 -11.14327 -10.75333 -10.58248 -10.32423 -9.51733 -9.13941 -8.21795 -6.35557 1.38056 1.43190 1.50526 1.62389 2.20995 2.42555 2.61812 3.10774 3.14561 3.40266 3.50978 3.60453 3.84535 3.99394 4.07296 4.09898 4.15138 4.25581 4.31312 4.37690 4.39214 4.50403 4.52100 4.56726 4.63479 4.66613 4.70325 4.72734 4.77412 4.78029 4.80485 4.86662 4.88456 4.93095 4.96599 4.99964 5.02847 5.13271 5.19819 5.24682 5.29214 5.32459 5.35146 5.42036 5.48870 5.61255 5.62464 5.69801 5.84062 6.16187 6.16422 6.26915 6.36720 6.59250 6.79574 7.24251 7.34019 8.90194 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.003201 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.756723 B = 8744.876766 C = 9070.606752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.139 4.139 6 C 0.069 3.931 7 N -0.540 5.540 8 C 0.029 3.971 9 C 0.062 3.938 10 O -0.398 6.398 11 C 0.083 3.917 12 C -0.079 4.079 13 C -0.128 4.128 14 C 0.495 3.505 15 O -0.595 6.595 16 N -0.614 5.614 17 C 0.142 3.858 18 C 0.031 3.969 19 C -0.548 4.548 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.932 5.932 23 Si 0.972 3.028 24 H -0.260 1.260 25 H -0.282 1.282 26 H -0.268 1.268 27 C 0.131 3.869 28 C 0.075 3.925 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.114 0.886 46 H 0.135 0.865 47 H 0.083 0.917 48 H 0.054 0.946 49 H -0.029 1.029 50 H -0.005 1.005 51 H 0.264 0.736 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.093 0.907 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 -29.076 -5.503 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.106 4.106 4 H 0.087 0.913 5 C -0.196 4.196 6 C -0.057 4.057 7 N -0.263 5.263 8 C -0.100 4.100 9 C -0.014 4.014 10 O -0.317 6.317 11 C 0.006 3.994 12 C -0.080 4.080 13 C -0.168 4.168 14 C 0.284 3.716 15 O -0.477 6.477 16 N -0.345 5.345 17 C 0.020 3.980 18 C -0.007 4.007 19 C -0.586 4.586 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.795 3.205 24 H -0.184 1.184 25 H -0.207 1.207 26 H -0.193 1.193 27 C 0.009 3.991 28 C -0.052 4.052 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.132 0.868 46 H 0.153 0.847 47 H 0.102 0.898 48 H 0.073 0.927 49 H -0.011 1.011 50 H 0.013 0.987 51 H 0.073 0.927 52 H 0.089 0.911 53 H 0.101 0.899 54 H 0.111 0.889 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.077 -28.100 -5.181 28.649 hybrid contribution 0.282 0.903 -0.103 0.952 sum 2.359 -27.196 -5.284 27.805 Atomic orbital electron populations 1.21823 0.96088 1.01646 1.01698 1.21489 0.95757 0.95579 1.02292 1.21212 0.94624 0.96296 0.98440 0.91335 1.21755 1.00177 1.00738 0.96942 1.22241 0.95147 0.86958 1.01400 1.61071 1.10588 1.18313 1.36361 1.22441 0.88179 0.98786 1.00576 1.23232 0.94055 0.83720 1.00399 1.87536 1.76269 1.42929 1.24959 1.22344 0.94407 0.98941 0.83755 1.20980 0.96224 0.97227 0.93573 1.22375 1.01590 0.94751 0.98078 1.21718 0.79253 0.88283 0.82344 1.90661 1.56654 1.38310 1.62084 1.48687 1.56111 1.20787 1.08897 1.21319 0.94328 0.88800 0.93559 1.19114 0.94376 0.93396 0.93786 1.21529 0.94500 1.11558 1.31023 0.91554 1.26050 0.95632 1.00271 0.97849 1.70134 1.07846 1.34037 1.45107 0.85409 0.78130 0.78073 0.78869 1.18434 1.20706 1.19345 1.22048 0.96007 0.82991 0.98041 1.20968 1.02957 0.90413 0.90903 0.93040 0.92407 0.92991 0.91339 0.91771 0.93188 0.93223 0.93395 0.93445 0.90078 0.88405 0.92934 0.89683 0.92129 0.90410 0.93371 0.86808 0.84741 0.89824 0.92734 1.01083 0.98671 0.92730 0.91095 0.89880 0.88896 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.67 71.98 0.70 -1.05 16 2 C -0.11 -1.12 5.40 30.59 0.17 -0.96 16 3 C -0.09 -1.05 2.32 -10.79 -0.03 -1.08 16 4 H 0.07 0.89 6.11 -2.39 -0.01 0.88 16 5 C -0.14 -2.27 8.87 71.98 0.64 -1.63 16 6 C 0.07 0.74 4.19 86.30 0.36 1.10 16 7 N -0.54 -7.89 3.68 -910.77 -3.35 -11.25 16 8 C 0.03 0.38 5.16 87.06 0.45 0.83 16 9 C 0.06 1.23 7.01 72.26 0.51 1.73 16 10 O -0.40 -11.87 8.73 -143.89 -1.26 -13.13 16 11 C 0.08 2.19 5.15 72.43 0.37 2.56 16 12 C -0.08 -1.77 0.63 -52.77 -0.03 -1.80 16 13 C -0.13 -3.08 5.78 30.56 0.18 -2.91 16 14 C 0.49 19.32 7.88 87.90 0.69 20.02 16 15 O -0.60 -29.30 17.59 -3.04 -0.05 -29.36 16 16 N -0.61 -24.15 2.93 -818.22 -2.40 -26.55 16 17 C 0.14 6.63 5.88 86.38 0.51 7.14 16 18 C 0.03 1.82 5.30 29.85 0.16 1.98 16 19 C -0.55 -33.17 9.11 25.60 0.23 -32.94 16 20 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 21 C 0.00 0.01 5.46 84.65 0.46 0.47 16 22 N -0.93 -60.04 13.29 21.45 0.28 -59.75 16 23 Si 0.97 46.25 29.54 68.60 2.03 48.28 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.13 3.95 6.02 86.76 0.52 4.47 16 28 C 0.07 1.10 3.58 84.12 0.30 1.40 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.66 6.47 -2.39 -0.02 0.64 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.04 6.67 -2.39 -0.02 1.02 16 36 H 0.05 0.79 6.37 -2.39 -0.02 0.77 16 37 H 0.05 0.40 8.12 -2.39 -0.02 0.38 16 38 H 0.08 0.82 7.78 -2.39 -0.02 0.80 16 39 H 0.10 0.91 7.40 -2.39 -0.02 0.89 16 40 H 0.05 0.59 6.72 -2.39 -0.02 0.57 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.51 7.17 -2.38 -0.02 1.50 16 44 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 45 H 0.11 2.47 7.85 -2.39 -0.02 2.45 16 46 H 0.13 2.35 7.94 -2.39 -0.02 2.33 16 47 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 48 H 0.05 2.67 7.92 -2.38 -0.02 2.65 16 49 H -0.03 -1.96 8.14 -2.39 -0.02 -1.98 16 50 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 51 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 52 H 0.07 2.57 6.65 -2.38 -0.02 2.56 16 53 H 0.08 2.17 6.89 -2.39 -0.02 2.15 16 54 H 0.09 1.20 5.74 -2.39 -0.01 1.18 16 55 H 0.07 0.73 7.40 -2.38 -0.02 0.71 16 Total: -1.00 -80.66 413.02 2.28 -78.38 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.84 Total: 14.04 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.19 Total: -0.67 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.47 Total: -97.54 kcal Atomic # 8 Polarization: -41.17 SS G_CDS: -1.31 Total: -42.48 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -80.66 2.28 -78.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272422505.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.227 kcal (2) G-P(sol) polarization free energy of solvation -80.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds