Wall clock time and date at job start Tue Mar 31 2020 23:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47489 * 2 1 4 4 H 1.09008 * 109.47300 * 305.00520 * 3 2 1 5 5 C 1.52996 * 109.47464 * 185.00203 * 3 2 1 6 6 N 1.46504 * 109.47152 * 64.99971 * 3 2 1 7 7 C 1.46860 * 124.35601 * 240.00340 * 6 3 2 8 8 C 1.54006 * 105.38284 * 196.75762 * 7 6 3 9 9 C 1.54163 * 102.25024 * 335.01778 * 8 7 6 10 10 C 1.34495 * 124.35069 * 60.02433 * 6 3 2 11 11 O 1.21283 * 124.95378 * 359.45880 * 10 6 3 12 12 C 1.50782 * 111.13599 * 216.58182 * 8 7 6 13 13 O 1.44085 * 107.81008 * 328.04359 * 12 8 7 14 14 C 1.36445 * 117.26846 * 280.31111 * 13 12 8 15 15 C 1.54249 * 111.73237 * 61.40703 * 14 13 12 16 16 N 1.44845 * 109.05096 * 283.38582 * 15 14 13 17 17 C 1.46906 * 110.99451 * 219.64124 * 16 15 14 18 18 C 1.53000 * 109.47160 * 66.04761 * 17 16 15 19 19 C 1.52997 * 109.47199 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47520 * 180.02562 * 19 18 17 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.37873 * 120.00356 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00049 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 120.00024 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47121 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46589 * 120.00237 * 24 22 20 27 27 H 1.48497 * 109.47158 * 240.00283 * 24 22 20 28 28 C 1.48061 * 113.87918 * 93.50252 * 16 15 14 29 29 H 1.08996 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46825 * 300.00332 * 1 2 3 31 31 H 1.09003 * 109.47357 * 59.99791 * 1 2 3 32 32 H 1.09000 * 109.46977 * 240.00201 * 2 1 3 33 33 H 1.09003 * 109.47357 * 120.00209 * 2 1 3 34 34 H 1.08999 * 109.47241 * 59.99848 * 5 3 2 35 35 H 1.09005 * 109.47524 * 179.97438 * 5 3 2 36 36 H 1.09002 * 109.47015 * 299.99716 * 5 3 2 37 37 H 1.08999 * 110.26361 * 77.78030 * 7 6 3 38 38 H 1.09004 * 110.26462 * 315.73607 * 7 6 3 39 39 H 1.08993 * 110.50046 * 142.96124 * 9 8 7 40 40 H 1.08995 * 110.49618 * 265.64461 * 9 8 7 41 41 H 1.09000 * 109.79223 * 208.47073 * 12 8 7 42 42 H 1.08997 * 109.78954 * 87.62450 * 12 8 7 43 43 H 1.08998 * 109.02513 * 181.98552 * 14 13 12 44 44 H 1.09001 * 109.02848 * 300.90082 * 14 13 12 45 45 H 1.09005 * 109.54105 * 43.25638 * 15 14 13 46 46 H 1.08993 * 109.53923 * 163.43156 * 15 14 13 47 47 H 1.09006 * 109.46537 * 186.04559 * 17 16 15 48 48 H 1.08995 * 109.47478 * 306.04516 * 17 16 15 49 49 H 1.08994 * 109.47196 * 300.00080 * 18 17 16 50 50 H 1.09005 * 109.47266 * 59.99431 * 18 17 16 51 51 H 1.09005 * 109.47020 * 300.00511 * 19 18 17 52 52 H 1.09005 * 109.47173 * 59.99746 * 19 18 17 53 53 H 0.96996 * 120.00642 * 179.97438 * 23 22 20 54 54 H 1.09002 * 108.97313 * 79.00108 * 28 16 15 55 55 H 1.09005 * 108.97248 * 197.78182 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6525 2.0975 1.2518 7 6 0.8071 3.2956 1.3331 8 6 1.0245 3.8535 2.7520 9 6 1.4563 2.5975 3.5348 10 6 2.0256 1.6791 2.4744 11 8 2.7176 0.7078 2.6953 12 6 -0.2528 4.4257 3.3129 13 8 -1.0162 4.9600 2.2140 14 6 -0.6556 6.1880 1.7410 15 6 0.7871 6.1887 1.1952 16 7 1.7137 6.2127 2.3082 17 6 2.8563 7.0908 2.0229 18 6 2.3735 8.5390 1.9199 19 6 3.5636 9.4535 1.6235 20 6 3.0882 10.8800 1.5226 21 1 2.0417 11.1111 1.6561 22 6 3.9892 11.8900 1.2598 23 7 5.2634 11.6086 1.0967 24 14 3.3997 13.6582 1.1341 25 1 1.9321 13.7075 1.3551 26 1 4.0829 14.4820 2.1636 27 1 3.7156 14.1905 -0.2157 28 6 2.1695 4.8711 2.7376 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8532 0.9570 -1.0571 35 1 3.9282 2.4720 -0.1262 36 1 3.9995 0.9053 0.7161 37 1 -0.2399 3.0294 1.1885 38 1 1.1176 4.0280 0.5879 39 1 2.2194 2.8500 4.2708 40 1 0.5961 2.1349 4.0186 41 1 -0.0211 5.2202 4.0222 42 1 -0.8218 3.6402 3.8103 43 1 -1.3383 6.4752 0.9412 44 1 -0.7291 6.9157 2.5491 45 1 0.9530 5.2893 0.6020 46 1 0.9407 7.0698 0.5722 47 1 3.5877 7.0080 2.8270 48 1 3.3168 6.7935 1.0808 49 1 1.6421 8.6218 1.1161 50 1 1.9130 8.8364 2.8621 51 1 4.2948 9.3706 2.4277 52 1 4.0245 9.1563 0.6814 53 1 5.8973 12.3190 0.9115 54 1 2.9437 4.5240 2.0533 55 1 2.5902 4.9440 3.7406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040409.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:34 Heat of formation + Delta-G solvation = -89.482958 kcal Electronic energy + Delta-G solvation = -31726.779477 eV Core-core repulsion = 27763.081519 eV Total energy + Delta-G solvation = -3963.697958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.44531 -40.39261 -37.94071 -37.54141 -36.88189 -35.50758 -33.39778 -32.92255 -31.08369 -30.03552 -29.28104 -28.30651 -27.09738 -26.07207 -24.72994 -24.29801 -23.03270 -22.47751 -21.41493 -20.49855 -19.90023 -18.51167 -18.21206 -17.65972 -17.11698 -17.05903 -16.56630 -16.52540 -16.37031 -15.90452 -15.55183 -15.35893 -15.14194 -14.82210 -14.73213 -14.39158 -14.34649 -14.25123 -14.11660 -13.91884 -13.58250 -13.31082 -13.17501 -13.04745 -12.89510 -12.82980 -12.54034 -12.52656 -12.43235 -12.35456 -12.14932 -12.01322 -11.94204 -11.83906 -11.73290 -11.42107 -11.33892 -11.30549 -11.04907 -10.65226 -10.55644 -10.39153 -9.65668 -9.13658 -8.20407 -6.31185 1.39986 1.40486 1.53764 1.57752 1.99467 2.40480 2.72556 2.90340 3.13173 3.28633 3.44155 3.53376 3.78916 3.89055 3.97192 4.02175 4.06944 4.13545 4.18205 4.20236 4.39876 4.41359 4.49255 4.55207 4.56053 4.64034 4.67401 4.68480 4.70765 4.72558 4.74825 4.79472 4.87596 4.91829 4.94591 4.96080 5.01169 5.06135 5.07719 5.11368 5.16991 5.18052 5.23025 5.27865 5.34921 5.52747 5.68127 5.75052 5.86306 6.03527 6.16657 6.23974 6.26855 6.65941 6.86483 7.18413 7.38398 8.91728 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002487 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.199266 B =11256.865375 C =11820.026816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.104 0.896 5 C -0.163 4.163 6 N -0.609 5.609 7 C 0.109 3.891 8 C -0.090 4.090 9 C -0.136 4.136 10 C 0.511 3.489 11 O -0.573 6.573 12 C 0.089 3.911 13 O -0.381 6.381 14 C 0.085 3.915 15 C -0.008 4.008 16 N -0.548 5.548 17 C 0.075 3.925 18 C -0.085 4.085 19 C 0.025 3.975 20 C -0.538 4.538 21 H 0.061 0.939 22 C -0.002 4.002 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.260 1.260 26 H -0.279 1.279 27 H -0.278 1.278 28 C 0.073 3.927 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.069 0.931 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.020 0.980 49 H 0.054 0.946 50 H 0.053 0.947 51 H -0.011 1.011 52 H -0.012 1.012 53 H 0.263 0.737 54 H 0.024 0.976 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -22.361 -0.142 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.048 3.952 4 H 0.122 0.878 5 C -0.221 4.221 6 N -0.342 5.342 7 C -0.012 4.012 8 C -0.092 4.092 9 C -0.176 4.176 10 C 0.300 3.700 11 O -0.453 6.453 12 C 0.013 3.987 13 O -0.299 6.299 14 C 0.006 3.994 15 C -0.136 4.136 16 N -0.273 5.273 17 C -0.053 4.053 18 C -0.123 4.123 19 C -0.012 4.012 20 C -0.576 4.576 21 H 0.079 0.921 22 C -0.200 4.200 23 N -0.576 5.576 24 Si 0.789 3.211 25 H -0.184 1.184 26 H -0.205 1.205 27 H -0.204 1.204 28 C -0.054 4.054 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.125 0.875 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.007 0.993 52 H 0.006 0.994 53 H 0.072 0.928 54 H 0.042 0.958 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.016 -22.734 0.139 26.708 hybrid contribution 1.447 1.023 -0.699 1.905 sum -12.569 -21.711 -0.560 25.093 Atomic orbital electron populations 1.21680 0.94539 1.01907 1.01892 1.21879 0.97138 0.95533 1.02759 1.21152 0.94781 0.93884 0.85368 0.87795 1.22127 0.95496 1.01695 1.02818 1.48624 1.50283 1.29244 1.06053 1.22750 0.95977 0.85649 0.96825 1.21601 0.97326 0.94378 0.95852 1.22468 1.04371 0.93615 0.97195 1.21305 0.78906 0.84503 0.85312 1.90670 1.40183 1.29936 1.84512 1.22525 0.89082 0.98912 0.88204 1.86539 1.57604 1.34887 1.50848 1.21694 0.93561 0.85463 0.98701 1.23386 0.94571 1.02719 0.92950 1.60884 1.16285 1.10862 1.39220 1.21945 0.91909 0.92764 0.98673 1.21390 0.97806 0.92512 1.00600 1.18974 0.93840 0.94013 0.94411 1.21711 0.94538 0.93462 1.47884 0.92107 1.25991 0.94969 1.04083 0.94941 1.70103 1.03158 1.34203 1.50125 0.85411 0.78962 0.79015 0.77752 1.18400 1.20498 1.20421 1.22366 0.95055 0.86987 1.00992 0.92367 0.93573 0.91630 0.89667 0.92957 0.89719 0.93350 0.93486 0.88569 0.89534 0.87257 0.84923 0.91271 0.86140 0.87461 0.94425 0.90980 0.90978 0.91877 0.96124 0.92761 0.92869 0.99277 0.99373 0.92838 0.95764 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.80 71.98 0.71 -1.23 16 2 C -0.13 -2.18 5.36 30.59 0.16 -2.02 16 3 C 0.15 2.53 2.87 44.99 0.13 2.66 16 4 H 0.10 1.40 8.07 -2.38 -0.02 1.38 16 5 C -0.16 -3.11 9.20 71.98 0.66 -2.45 16 6 N -0.61 -11.09 2.29 -794.45 -1.82 -12.91 16 7 C 0.11 1.71 4.95 86.65 0.43 2.14 16 8 C -0.09 -1.40 0.59 -52.10 -0.03 -1.43 16 9 C -0.14 -2.05 5.91 30.46 0.18 -1.87 16 10 C 0.51 11.16 7.39 87.92 0.65 11.81 16 11 O -0.57 -16.95 15.07 -3.04 -0.05 -16.99 16 12 C 0.09 1.25 5.83 71.26 0.42 1.66 16 13 O -0.38 -6.47 8.69 -98.67 -0.86 -7.33 16 14 C 0.08 1.60 6.50 72.41 0.47 2.07 16 15 C -0.01 -0.19 5.12 87.11 0.45 0.26 16 16 N -0.55 -13.77 3.99 -895.44 -3.57 -17.34 16 17 C 0.07 2.44 4.84 86.30 0.42 2.85 16 18 C -0.09 -3.38 5.12 30.59 0.16 -3.22 16 19 C 0.03 1.32 4.97 29.85 0.15 1.47 16 20 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 22 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 23 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 24 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 28 C 0.07 1.54 4.37 86.14 0.38 1.91 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.70 7.75 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.15 6.62 -2.39 -0.02 1.14 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.05 1.14 6.80 -2.39 -0.02 1.12 16 37 H 0.10 1.36 7.26 -2.39 -0.02 1.35 16 38 H 0.09 1.49 4.58 -2.38 -0.01 1.48 16 39 H 0.11 1.61 7.62 -2.39 -0.02 1.59 16 40 H 0.13 1.36 7.42 -2.39 -0.02 1.35 16 41 H 0.07 1.12 7.70 -2.39 -0.02 1.10 16 42 H 0.12 1.10 7.38 -2.39 -0.02 1.08 16 43 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 45 H 0.07 1.44 3.83 -2.38 -0.01 1.43 16 46 H 0.07 1.85 5.85 -2.39 -0.01 1.83 16 47 H 0.06 2.12 8.03 -2.38 -0.02 2.10 16 48 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 49 H 0.05 2.07 6.37 -2.39 -0.02 2.06 16 50 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 51 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 52 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 53 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 54 H 0.02 0.58 7.84 -2.39 -0.02 0.56 16 55 H 0.08 1.70 7.76 -2.38 -0.02 1.68 16 Total: -1.00 -69.24 408.02 2.88 -66.36 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.85 Total: 14.13 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 6.02 Total: -15.22 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -5.11 Total: -86.98 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.90 Total: -24.32 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.24 2.88 -66.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040409.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.124 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds