Wall clock time and date at job start Tue Mar 31 2020 23:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 H 1.09000 * 109.46692 * 54.99648 * 3 2 1 5 5 C 1.52993 * 109.47571 * 174.99780 * 3 2 1 6 6 N 1.46498 * 109.46890 * 295.00363 * 3 2 1 7 7 C 1.46923 * 124.35289 * 119.99836 * 6 3 2 8 8 C 1.53693 * 105.29832 * 163.71048 * 7 6 3 9 9 C 1.53756 * 102.64727 * 24.53741 * 8 7 6 10 10 C 1.34488 * 124.34529 * 299.99379 * 6 3 2 11 11 O 1.21281 * 124.94510 * 0.41675 * 10 6 3 12 12 C 1.50301 * 111.92972 * 264.20392 * 8 7 6 13 13 O 1.44694 * 112.26288 * 329.41647 * 12 8 7 14 14 C 1.44088 * 115.95681 * 319.12600 * 13 12 8 15 15 C 1.50668 * 112.05111 * 319.42417 * 14 13 12 16 16 N 1.47595 * 108.56423 * 93.65804 * 15 14 13 17 17 C 1.46897 * 110.99893 * 152.86272 * 16 15 14 18 18 C 1.53004 * 109.47213 * 204.06501 * 17 16 15 19 19 C 1.52999 * 109.47452 * 174.84873 * 18 17 16 20 20 C 1.50695 * 109.46890 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00463 * 359.72261 * 20 19 18 22 22 C 1.37882 * 119.99945 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99756 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00391 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47007 * 59.99832 * 24 22 20 26 26 H 1.48496 * 109.47295 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46798 * 300.00017 * 24 22 20 28 28 C 1.40702 * 114.32106 * 279.35457 * 16 15 14 29 29 H 1.08996 * 109.46738 * 60.00079 * 1 2 3 30 30 H 1.09001 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47094 * 299.99734 * 1 2 3 32 32 H 1.08997 * 109.47383 * 239.99541 * 2 1 3 33 33 H 1.09003 * 109.47061 * 119.99830 * 2 1 3 34 34 H 1.09000 * 109.47064 * 300.00530 * 5 3 2 35 35 H 1.09000 * 109.47038 * 59.99669 * 5 3 2 36 36 H 1.09000 * 109.47624 * 180.02562 * 5 3 2 37 37 H 1.09006 * 110.27469 * 44.74987 * 7 6 3 38 38 H 1.08996 * 110.35689 * 282.70893 * 7 6 3 39 39 H 1.09006 * 110.51404 * 94.69111 * 9 8 7 40 40 H 1.08997 * 110.51255 * 217.41723 * 9 8 7 41 41 H 1.08998 * 108.92633 * 90.13432 * 12 8 7 42 42 H 1.09002 * 108.92099 * 208.69818 * 12 8 7 43 43 H 1.08990 * 108.96736 * 80.08556 * 14 13 12 44 44 H 1.09001 * 108.96597 * 198.85396 * 14 13 12 45 45 H 1.08996 * 109.62655 * 333.93256 * 15 14 13 46 46 H 1.09001 * 109.62111 * 213.37790 * 15 14 13 47 47 H 1.08999 * 109.47520 * 84.06649 * 17 16 15 48 48 H 1.08998 * 109.47363 * 324.06387 * 17 16 15 49 49 H 1.09009 * 109.47024 * 54.84352 * 18 17 16 50 50 H 1.09000 * 109.46766 * 294.85131 * 18 17 16 51 51 H 1.08997 * 109.47129 * 60.00044 * 19 18 17 52 52 H 1.09000 * 109.46825 * 299.99829 * 19 18 17 53 53 H 0.97004 * 120.00346 * 179.97438 * 23 22 20 54 54 H 1.09000 * 109.20883 * 181.13822 * 28 16 15 55 55 H 1.09004 * 109.20889 * 300.50195 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 7 1.6524 2.0974 -1.2518 7 6 0.8067 3.2961 -1.3330 8 6 1.0157 3.8444 -2.7535 9 6 1.4525 2.5948 -3.5358 10 6 2.0252 1.6787 -2.4743 11 8 2.7187 0.7085 -2.6948 12 6 2.0588 4.9259 -2.7898 13 8 2.1101 5.6797 -1.5558 14 6 0.8384 5.9984 -0.9581 15 6 -0.1861 6.3985 -1.9877 16 7 -0.9598 5.2014 -2.3707 17 6 -2.3076 5.5687 -2.8250 18 6 -3.2502 4.3776 -2.6409 19 6 -4.6785 4.7983 -2.9926 20 6 -5.6068 3.6253 -2.8107 21 1 -5.2164 2.6735 -2.4819 22 6 -6.9539 3.7656 -3.0691 23 7 -7.4287 4.9234 -3.4737 24 14 -8.1047 2.3114 -2.8443 25 1 -8.0558 1.8553 -1.4320 26 1 -9.4910 2.7198 -3.1855 27 1 -7.6817 1.2029 -3.7374 28 6 -0.3190 4.3736 -3.3109 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8532 0.9570 1.0571 35 1 3.9995 0.9052 -0.7160 36 1 3.9282 2.4720 0.1262 37 1 1.1225 4.0320 -0.5935 38 1 -0.2399 3.0327 -1.1799 39 1 0.5948 2.1285 -4.0206 40 1 2.2152 2.8517 -4.2708 41 1 3.0334 4.4713 -2.9672 42 1 1.8336 5.6067 -3.6108 43 1 0.4735 5.1264 -0.4156 44 1 0.9732 6.8213 -0.2560 45 1 0.3163 6.8058 -2.8651 46 1 -0.8561 7.1477 -1.5656 47 1 -2.2732 5.8453 -3.8787 48 1 -2.6708 6.4133 -2.2394 49 1 -3.2147 4.0430 -1.6041 50 1 -2.9393 3.5638 -3.2961 51 1 -4.7139 5.1328 -4.0294 52 1 -4.9892 5.6121 -2.3374 53 1 -8.3763 5.0221 -3.6558 54 1 -0.9682 3.5307 -3.5480 55 1 -0.1265 4.9446 -4.2192 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040410.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:38 Heat of formation + Delta-G solvation = -82.033222 kcal Electronic energy + Delta-G solvation = -32097.950125 eV Core-core repulsion = 28134.575212 eV Total energy + Delta-G solvation = -3963.374913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.52309 -40.36122 -37.86744 -37.36867 -36.56217 -35.58917 -33.41671 -33.03121 -31.09261 -30.25152 -29.19761 -27.98905 -27.72413 -26.05686 -24.71703 -24.01857 -23.02045 -22.05845 -21.77459 -20.48091 -19.85493 -18.46962 -18.08721 -17.79650 -17.23113 -16.91320 -16.62362 -16.45325 -16.24790 -15.83566 -15.62094 -15.38329 -15.00480 -14.93858 -14.46986 -14.39121 -14.31030 -14.16686 -14.02042 -13.71841 -13.66234 -13.32300 -13.10212 -13.02443 -12.84323 -12.83065 -12.60436 -12.57397 -12.52726 -12.23460 -12.15898 -12.06991 -11.91180 -11.90266 -11.75425 -11.46942 -11.33345 -11.30690 -11.03747 -10.63428 -10.52247 -10.41995 -9.55498 -9.19476 -8.18575 -6.28509 1.40672 1.42593 1.50487 1.59854 2.05789 2.41396 2.71943 2.85680 3.15015 3.21563 3.44348 3.59743 3.71758 3.86939 3.98596 4.07280 4.12617 4.15408 4.18223 4.25981 4.39659 4.44595 4.46627 4.50694 4.56962 4.65844 4.66851 4.70184 4.70653 4.72686 4.76709 4.79125 4.83591 4.86661 4.97874 5.01196 5.02856 5.05237 5.06370 5.15363 5.18424 5.19817 5.27375 5.32240 5.35522 5.55550 5.74365 5.79896 5.90271 6.03630 6.14607 6.21495 6.30483 6.44123 6.89008 7.21683 7.40599 8.92819 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.003240 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.086782 B = 8639.744212 C =10211.714045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.150 3.850 4 H 0.105 0.895 5 C -0.158 4.158 6 N -0.605 5.605 7 C 0.106 3.894 8 C -0.091 4.091 9 C -0.137 4.137 10 C 0.512 3.488 11 O -0.573 6.573 12 C 0.080 3.920 13 O -0.398 6.398 14 C 0.041 3.959 15 C 0.028 3.972 16 N -0.554 5.554 17 C 0.075 3.925 18 C -0.086 4.086 19 C 0.026 3.974 20 C -0.540 4.540 21 H 0.057 0.943 22 C 0.001 3.999 23 N -0.933 5.933 24 Si 0.958 3.042 25 H -0.267 1.267 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.083 3.917 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.030 0.970 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.044 0.956 51 H -0.011 1.011 52 H -0.007 1.007 53 H 0.263 0.737 54 H 0.075 0.925 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.098 -0.201 6.694 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.048 3.952 4 H 0.123 0.877 5 C -0.216 4.216 6 N -0.337 5.337 7 C -0.015 4.015 8 C -0.092 4.092 9 C -0.178 4.178 10 C 0.300 3.700 11 O -0.454 6.454 12 C 0.004 3.996 13 O -0.318 6.318 14 C -0.035 4.035 15 C -0.099 4.099 16 N -0.277 5.277 17 C -0.052 4.052 18 C -0.125 4.125 19 C -0.011 4.011 20 C -0.578 4.578 21 H 0.075 0.925 22 C -0.196 4.196 23 N -0.573 5.573 24 Si 0.783 3.217 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.047 4.047 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.007 0.993 52 H 0.012 0.988 53 H 0.072 0.928 54 H 0.093 0.907 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 22.450 -0.836 7.099 23.561 hybrid contribution -1.330 -0.244 -1.179 1.794 sum 21.120 -1.080 5.920 21.961 Atomic orbital electron populations 1.21693 0.95415 1.01607 1.01588 1.21897 0.96279 0.96322 1.02808 1.21164 0.95473 0.93240 0.85298 0.87653 1.22087 0.94563 1.02298 1.02695 1.48632 1.49828 1.29309 1.05965 1.22852 0.95208 0.86077 0.97368 1.21447 0.96340 0.95400 0.96060 1.22328 1.03755 0.94165 0.97534 1.21182 0.79033 0.84455 0.85306 1.90656 1.40446 1.29723 1.84531 1.22290 0.98489 0.91620 0.87214 1.88406 1.29811 1.73867 1.39701 1.22976 0.82858 1.02310 0.95325 1.22497 0.96552 0.91728 0.99121 1.59274 1.03121 1.19915 1.45438 1.22017 0.87214 0.97913 0.98041 1.21371 0.93765 0.96837 1.00483 1.18958 0.92355 0.95264 0.94551 1.21667 0.93396 0.97969 1.44765 0.92480 1.25912 1.00258 0.98535 0.94935 1.70074 1.14343 1.25680 1.47231 0.85603 0.77581 0.79443 0.79058 1.19191 1.20916 1.19424 1.21216 0.93480 0.97337 0.92649 0.94461 0.92750 0.91619 0.93090 0.89262 0.89698 0.93640 0.92225 0.86778 0.90541 0.86971 0.86496 0.89030 0.91811 0.89774 0.87294 0.93118 0.88514 0.95206 0.90809 0.92737 0.93734 0.99306 0.98823 0.92846 0.90706 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.80 71.98 0.71 -2.25 16 2 C -0.13 -2.65 5.36 30.59 0.16 -2.49 16 3 C 0.15 2.76 2.87 44.99 0.13 2.89 16 4 H 0.11 1.56 8.07 -2.39 -0.02 1.54 16 5 C -0.16 -2.81 9.20 71.98 0.66 -2.15 16 6 N -0.60 -12.55 2.29 -794.85 -1.82 -14.37 16 7 C 0.11 2.00 4.85 86.53 0.42 2.42 16 8 C -0.09 -1.61 0.61 -52.22 -0.03 -1.65 16 9 C -0.14 -2.60 5.85 30.34 0.18 -2.42 16 10 C 0.51 12.57 7.40 87.94 0.65 13.22 16 11 O -0.57 -18.11 15.07 -3.03 -0.05 -18.16 16 12 C 0.08 1.33 5.63 71.11 0.40 1.73 16 13 O -0.40 -7.29 10.29 -148.98 -1.53 -8.82 16 14 C 0.04 0.64 5.97 71.23 0.43 1.07 16 15 C 0.03 0.49 5.34 85.41 0.46 0.95 16 16 N -0.55 -12.24 3.32 -912.38 -3.03 -15.27 16 17 C 0.08 2.18 5.03 86.31 0.43 2.61 16 18 C -0.09 -3.25 5.15 30.60 0.16 -3.09 16 19 C 0.03 1.33 4.97 29.85 0.15 1.47 16 20 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 21 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 22 C 0.00 0.07 5.46 84.66 0.46 0.54 16 23 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 24 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.08 1.71 3.68 87.77 0.32 2.03 16 29 H 0.04 0.88 7.75 -2.39 -0.02 0.86 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.30 6.63 -2.39 -0.02 1.29 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.04 1.05 6.80 -2.39 -0.02 1.03 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.11 2.01 3.88 -2.38 -0.01 2.00 16 38 H 0.08 1.67 7.64 -2.39 -0.02 1.65 16 39 H 0.11 2.11 7.52 -2.38 -0.02 2.09 16 40 H 0.12 1.85 7.77 -2.39 -0.02 1.83 16 41 H 0.09 1.47 7.68 -2.39 -0.02 1.45 16 42 H 0.06 0.99 6.69 -2.39 -0.02 0.97 16 43 H 0.08 1.38 4.49 -2.39 -0.01 1.37 16 44 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 0.89 6.86 -2.39 -0.02 0.88 16 46 H 0.10 1.61 7.43 -2.39 -0.02 1.59 16 47 H 0.03 0.88 7.98 -2.39 -0.02 0.87 16 48 H 0.07 2.12 7.44 -2.39 -0.02 2.11 16 49 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 50 H 0.04 1.66 6.93 -2.39 -0.02 1.65 16 51 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 52 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 53 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 54 H 0.07 1.77 6.11 -2.39 -0.01 1.76 16 55 H 0.04 0.71 7.67 -2.39 -0.02 0.69 16 Total: -1.00 -67.42 406.06 2.65 -64.76 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.85 Total: 16.66 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.92 Total: -14.96 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -4.56 Total: -85.30 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.58 Total: -26.98 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.42 2.65 -64.76 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040410.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.269 kcal (2) G-P(sol) polarization free energy of solvation -67.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds