Wall clock time and date at job start Tue Mar 31 2020 23:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 H 1.08998 * 109.47156 * 304.99644 * 3 2 1 5 5 O 1.42892 * 109.47400 * 64.99766 * 3 2 1 6 6 C 1.53000 * 109.47159 * 185.00005 * 3 2 1 7 7 N 1.46900 * 109.47253 * 179.97438 * 6 3 2 8 8 C 1.47962 * 110.99937 * 293.95295 * 7 6 3 9 9 C 1.50496 * 112.67335 * 191.42018 * 8 7 6 10 10 C 1.54159 * 108.42546 * 93.86470 * 9 8 7 11 11 C 1.46050 * 112.42274 * 281.17234 * 10 9 8 12 12 C 1.54916 * 112.08618 * 181.92135 * 11 10 9 13 13 C 1.54424 * 101.81282 * 147.20093 * 12 11 10 14 14 N 1.46740 * 105.44895 * 334.27110 * 13 12 11 15 15 C 1.46499 * 124.33648 * 196.97778 * 14 13 12 16 16 C 1.53004 * 109.47198 * 90.00307 * 15 14 13 17 17 C 1.50700 * 109.47208 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 270.00126 * 21 19 17 23 23 H 1.48496 * 109.47029 * 30.00143 * 21 19 17 24 24 H 1.48499 * 109.47352 * 149.99973 * 21 19 17 25 25 C 1.34331 * 111.32362 * 17.24893 * 14 13 12 26 26 O 1.21280 * 124.90324 * 179.68986 * 25 14 13 27 27 C 1.54571 * 112.06701 * 60.82362 * 11 10 9 28 28 C 1.48055 * 111.00042 * 165.22169 * 7 6 3 29 29 H 1.08997 * 109.47454 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47190 * 300.00060 * 1 2 3 31 31 H 1.09005 * 109.47231 * 60.00288 * 1 2 3 32 32 H 1.09003 * 109.46846 * 239.99601 * 2 1 3 33 33 H 1.08995 * 109.46988 * 120.00230 * 2 1 3 34 34 H 0.96702 * 114.00140 * 59.99657 * 5 3 2 35 35 H 1.09002 * 109.46856 * 59.99805 * 6 3 2 36 36 H 1.09000 * 109.47247 * 300.00127 * 6 3 2 37 37 H 1.08999 * 108.84116 * 70.60205 * 8 7 6 38 38 H 1.08998 * 108.84589 * 312.24632 * 8 7 6 39 39 H 1.08994 * 109.67707 * 334.13198 * 9 8 7 40 40 H 1.09001 * 109.70288 * 213.61455 * 9 8 7 41 41 H 1.09000 * 108.89256 * 160.41402 * 10 9 8 42 42 H 1.09007 * 108.89179 * 41.92808 * 10 9 8 43 43 H 1.09006 * 110.95892 * 29.06893 * 12 11 10 44 44 H 1.09002 * 110.99566 * 265.34849 * 12 11 10 45 45 H 1.08997 * 110.24919 * 215.28036 * 13 12 11 46 46 H 1.08995 * 110.32145 * 93.30550 * 13 12 11 47 47 H 1.09000 * 109.47602 * 330.00254 * 15 14 13 48 48 H 1.08998 * 109.47492 * 210.00243 * 15 14 13 49 49 H 1.08994 * 109.47074 * 60.00190 * 16 15 14 50 50 H 1.08998 * 109.47285 * 300.00026 * 16 15 14 51 51 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 52 52 H 1.09000 * 109.59228 * 41.89549 * 27 11 10 53 53 H 1.08992 * 109.59833 * 162.36534 * 27 11 10 54 54 H 1.08999 * 108.77535 * 205.62447 * 28 7 6 55 55 H 1.09004 * 108.77476 * 323.92058 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6620 2.0814 1.2209 6 6 3.5648 1.4443 -0.1257 7 7 4.0545 2.8293 -0.1263 8 6 3.6008 3.5516 -1.3354 9 6 4.2959 4.8741 -1.5162 10 6 5.5120 4.6630 -2.4398 11 6 6.6508 4.0785 -1.7366 12 6 7.8837 3.9140 -2.6601 13 6 9.0501 4.1357 -1.6728 14 7 8.4997 4.9700 -0.5984 15 6 9.3110 5.7210 0.3628 16 6 9.5895 7.1208 -0.1886 17 6 10.4236 7.8935 0.8005 18 1 10.7253 7.4322 1.7292 19 6 10.8016 9.1894 0.5198 20 7 10.4338 9.7513 -0.6110 21 14 11.8361 10.1470 1.7454 22 1 10.9445 10.8738 2.6845 23 1 12.6970 9.2072 2.5074 24 1 12.6893 11.1212 1.0186 25 6 7.1565 4.9523 -0.6057 26 8 6.4503 5.5510 0.1777 27 6 6.3188 2.6882 -1.1484 28 6 5.5156 2.8756 0.1084 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0141 1.6543 2.0138 35 1 3.8531 0.9569 -1.0571 36 1 3.9995 0.9052 0.7161 37 1 2.5274 3.7256 -1.2594 38 1 3.7935 2.9301 -2.2098 39 1 4.6305 5.2481 -0.5486 40 1 3.6107 5.5904 -1.9695 41 1 5.8103 5.6253 -2.8559 42 1 5.2242 4.0012 -3.2567 43 1 7.8872 4.6712 -3.4443 44 1 7.9201 2.9122 -3.0881 45 1 9.8712 4.6530 -2.1690 46 1 9.3931 3.1820 -1.2718 47 1 10.2547 5.2007 0.5266 48 1 8.7727 5.8029 1.3070 49 1 8.6459 7.6412 -0.3523 50 1 10.1279 7.0390 -1.1328 51 1 9.8969 9.2539 -1.2476 52 1 5.7383 2.1147 -1.8711 53 1 7.2430 2.1593 -0.9161 54 1 5.7701 3.8406 0.5468 55 1 5.7826 2.0889 0.8141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274553602.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:18 Heat of formation + Delta-G solvation = -115.316158 kcal Electronic energy + Delta-G solvation = -31528.254661 eV Core-core repulsion = 27563.436492 eV Total energy + Delta-G solvation = -3964.818169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.60227 -39.76527 -38.24839 -37.65185 -36.32829 -35.13489 -33.67024 -33.54247 -32.05752 -30.37749 -29.28676 -27.15267 -26.77224 -26.15079 -24.31747 -23.80018 -23.17497 -22.24868 -21.97186 -20.61197 -19.73253 -19.06678 -17.69429 -17.47828 -17.30474 -17.04695 -16.71610 -16.29143 -16.17316 -15.69886 -15.54940 -15.24600 -14.93551 -14.80332 -14.71625 -14.63261 -14.40362 -14.12108 -13.88629 -13.66093 -13.63247 -13.30704 -13.11990 -13.06204 -12.94400 -12.87482 -12.72237 -12.41859 -12.33283 -12.24872 -12.13976 -12.06472 -11.92640 -11.84898 -11.80902 -11.60689 -11.41478 -11.17732 -10.91652 -10.67329 -10.62155 -10.30113 -9.60616 -8.95369 -8.77044 -6.48244 1.49551 1.59437 1.59490 1.77146 2.09298 2.53986 2.84197 3.09335 3.13332 3.43232 3.58233 3.69687 3.76415 3.92285 3.99640 4.03999 4.15909 4.16131 4.18252 4.24852 4.27780 4.35539 4.39127 4.46501 4.46735 4.59824 4.63482 4.65836 4.69722 4.71403 4.73789 4.79122 4.86167 4.89887 4.96010 4.96720 4.99368 5.03939 5.08418 5.10634 5.13223 5.19912 5.26215 5.34560 5.35556 5.41165 5.49300 5.59436 5.91428 6.08689 6.25416 6.28445 6.29304 6.46066 6.98250 7.22173 7.35677 8.63341 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002388 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.243910 B =11722.223435 C =12178.269997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.112 3.888 4 H 0.084 0.916 5 O -0.570 6.570 6 C 0.029 3.971 7 N -0.551 5.551 8 C 0.078 3.922 9 C -0.143 4.143 10 C -0.095 4.095 11 C -0.077 4.077 12 C -0.116 4.116 13 C 0.093 3.907 14 N -0.621 5.621 15 C 0.150 3.850 16 C 0.010 3.990 17 C -0.619 4.619 18 H 0.058 0.942 19 C -0.040 4.040 20 N -0.935 5.935 21 Si 1.124 2.876 22 H -0.277 1.277 23 H -0.262 1.262 24 H -0.279 1.279 25 C 0.507 3.493 26 O -0.565 6.565 27 C -0.116 4.116 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.380 0.620 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.051 0.949 49 H -0.032 1.032 50 H -0.004 1.004 51 H 0.252 0.748 52 H 0.096 0.904 53 H 0.088 0.912 54 H 0.068 0.932 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 -26.254 -5.595 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.052 3.948 4 H 0.102 0.898 5 O -0.376 6.376 6 C -0.099 4.099 7 N -0.276 5.276 8 C -0.049 4.049 9 C -0.181 4.181 10 C -0.132 4.132 11 C -0.080 4.080 12 C -0.153 4.153 13 C -0.029 4.029 14 N -0.352 5.352 15 C 0.028 3.972 16 C -0.028 4.028 17 C -0.657 4.657 18 H 0.076 0.924 19 C -0.238 4.238 20 N -0.572 5.572 21 Si 0.944 3.056 22 H -0.202 1.202 23 H -0.186 1.186 24 H -0.205 1.205 25 C 0.296 3.704 26 O -0.446 6.446 27 C -0.155 4.155 28 C -0.095 4.095 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.150 0.850 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.107 0.893 48 H 0.070 0.930 49 H -0.014 1.014 50 H 0.015 0.985 51 H 0.061 0.939 52 H 0.114 0.886 53 H 0.107 0.893 54 H 0.086 0.914 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.226 -23.850 -4.925 27.713 hybrid contribution -0.100 -1.388 -0.512 1.483 sum -13.326 -25.237 -5.438 29.053 Atomic orbital electron populations 1.21682 0.95351 1.01773 1.01732 1.22163 0.96863 0.96053 1.03592 1.21972 0.92307 0.93001 0.87511 0.89783 1.86577 1.76607 1.58258 1.16192 1.22906 0.96363 0.88767 1.01838 1.61657 1.11648 1.14625 1.39694 1.21656 0.98949 0.93845 0.90446 1.21590 0.96940 0.97878 1.01646 1.20371 0.93686 1.00823 0.98346 1.20480 0.97200 0.96279 0.94085 1.22938 0.90382 1.05720 0.96249 1.22354 0.97692 0.95245 0.87589 1.48624 1.06802 1.47266 1.32549 1.21158 0.94266 0.91357 0.90449 1.19365 0.93866 0.93550 0.96051 1.22386 1.35950 1.01450 1.05918 0.92396 1.27585 0.98509 0.97303 1.00361 1.70897 1.36401 1.40274 1.09586 0.82871 0.74995 0.74899 0.72846 1.20247 1.18588 1.20478 1.21608 0.82184 0.80657 0.85923 1.90577 1.60581 1.47935 1.45495 1.21908 1.01760 0.93273 0.98572 1.22250 0.86464 1.03467 0.97338 0.91857 0.93200 0.93148 0.90037 0.90778 0.77155 0.92923 0.90176 0.91681 0.93305 0.91061 0.91289 0.93648 0.88016 0.90289 0.84976 0.90818 0.88370 0.89342 0.93022 1.01398 0.98540 0.93872 0.88598 0.89333 0.91448 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.81 71.98 0.71 -1.02 16 2 C -0.15 -1.55 5.61 30.59 0.17 -1.38 16 3 C 0.11 1.71 2.84 30.59 0.09 1.80 16 4 H 0.08 1.45 6.79 -2.39 -0.02 1.44 16 5 O -0.57 -11.44 12.74 -148.98 -1.90 -13.34 16 6 C 0.03 0.45 4.55 86.30 0.39 0.84 16 7 N -0.55 -12.47 4.54 -900.34 -4.09 -16.56 16 8 C 0.08 1.70 4.47 85.29 0.38 2.08 16 9 C -0.14 -3.91 5.55 30.18 0.17 -3.74 16 10 C -0.09 -2.25 4.14 28.85 0.12 -2.13 16 11 C -0.08 -1.86 0.57 -53.59 -0.03 -1.89 16 12 C -0.12 -2.14 6.03 31.73 0.19 -1.95 16 13 C 0.09 2.24 7.05 86.82 0.61 2.86 16 14 N -0.62 -22.26 2.93 -817.87 -2.40 -24.66 16 15 C 0.15 6.56 5.87 86.38 0.51 7.06 16 16 C 0.01 0.53 4.61 29.85 0.14 0.67 16 17 C -0.62 -36.57 9.11 25.60 0.23 -36.33 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 19 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 20 N -0.93 -60.19 13.65 21.45 0.29 -59.90 16 21 Si 1.12 51.53 29.90 68.60 2.05 53.58 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.51 18.54 5.69 88.01 0.50 19.04 16 26 O -0.57 -26.10 12.93 -3.03 -0.04 -26.14 16 27 C -0.12 -2.16 4.38 30.27 0.13 -2.03 16 28 C 0.03 0.78 4.99 85.22 0.43 1.21 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.38 5.40 9.05 -74.06 -0.67 4.73 16 35 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 36 H 0.08 1.13 7.67 -2.39 -0.02 1.11 16 37 H 0.06 1.46 6.99 -2.39 -0.02 1.45 16 38 H 0.05 0.83 6.39 -2.39 -0.02 0.82 16 39 H 0.07 2.64 4.62 -2.39 -0.01 2.63 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.24 8.12 -2.39 -0.02 1.22 16 42 H 0.10 1.69 7.50 -2.38 -0.02 1.67 16 43 H 0.08 1.54 7.98 -2.38 -0.02 1.52 16 44 H 0.13 1.33 7.86 -2.39 -0.02 1.31 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 48 H 0.05 2.45 7.92 -2.39 -0.02 2.43 16 49 H -0.03 -2.04 8.01 -2.39 -0.02 -2.06 16 50 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 16 51 H 0.25 16.62 7.22 -92.70 -0.67 15.95 16 52 H 0.10 1.35 6.88 -2.39 -0.02 1.33 16 53 H 0.09 1.39 7.71 -2.39 -0.02 1.37 16 54 H 0.07 2.34 3.85 -2.39 -0.01 2.33 16 55 H 0.07 1.54 7.56 -2.38 -0.02 1.52 16 Total: -1.00 -80.34 407.39 -0.59 -80.93 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.29 Total: 22.96 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.20 Total: -16.87 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -6.19 Total: -101.12 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.94 Total: -39.48 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.05 Total: 53.58 kcal Total: -80.34 -0.59 -80.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274553602.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.383 kcal (2) G-P(sol) polarization free energy of solvation -80.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds